PAVFinder (Post Assembly VariantFinder) is a Python package that detects genomic rearrangements from whole-genome shotgun assemblies and transcriptomic events such as gene fusions, internal tandem duplications, partial tandem duplications, and novel splice variants from RNA-seq assemblies.

PAVFinder is intended to replace the existing analysis suite of the trans-ABySS pipeline v1.4.8.

Current Release

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