LongStitch is a de novo genome assembly correction and scaffolding pipeline. LongStitch runs in up to three stages, which includes initial assembly correction (Tigmint-long), followed by two incremental scaffolding stages (ntLink and ARKS-long).
If you use LongStitch in your research, please cite:
Coombe L, Li JX, Lo T, Wong J, Nikolic V, Warren RL and Birol I. LongStitch: High-quality genome assembly correction and scaffolding using long reads. bioRxiv. 2021;2021.06.17.448848. doi: https://doi.org/10.1101/2021.06.17.448848.
Github release page for LongStitch: https://github.com/bcgsc/LongStitch/releases