MAVIS
1.3.0
About
Running the Pipeline
MAVIS standard input file format
Reference Input Files
Configuration and Settings
Supported SV Callers
Illustrations
Frequently Asked Questions
Theory and Models
Guidelines for Contributors
Package Documentation
Glossary
Literature
MAVIS
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mavis package
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mavis package
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Subpackages
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mavis.annotate package
Submodules
base module
constants module
file_io module
fusion module
genomic module
main module
protein module
splicing module
variant module
Module contents
Sub-package Documentation
Types of Output Files
Algorithm Overview
Levels of Annotations
Overview of Class Relationships
mavis.bam package
Submodules
cache module
cigar module
read module
stats module
Module contents
mavis.cluster package
Submodules
cluster module
constants module
main module
Module contents
Sub-package Documentation
Types of Output Files
Algorithm Overview
mavis.illustrate package
Submodules
constants module
diagram module
elements module
scatter module
util module
Module contents
mavis.pairing package
Submodules
constants module
main module
pairing module
Module contents
Sub-package Documentation
Output Files
Algorithm Overview
mavis.summary package
Submodules
constants module
main module
summary module
Module contents
Sub-package Documentation
Output Files
Algorithm Overview
mavis.validate package
Submodules
base module
call module
constants module
evidence module
main module
Module contents
Sub-package Documentation
Types of Output Files
Algorithm Overview
Submodules
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align module
assemble module
blat module
breakpoint module
checker module
config module
constants module
error module
interval module
main module
submit module
tools module
util module
Module contents
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holds submodules related to structural variants