constants module

mavis.pairing.constants.DEFAULTS = WeakMavisNamespace(_defns={'flanking_call_distance': 'the maximum distance allowed between breakpoint pairs (called by flanking pairs) in order for them to pair', 'split_call_distance': 'the maximum distance allowed between breakpoint pairs (called by split reads) in order for them to pair', 'contig_call_distance': 'the maximum distance allowed between breakpoint pairs (called by contig) in order for them to pair', 'spanning_call_distance': 'the maximum distance allowed between breakpoint pairs (called by spanning reads) in order for them to pair', 'input_call_distance': 'the maximum distance allowed between breakpoint pairs (called by input tools, not validated) in order for them to pair'}, _types={'flanking_call_distance': <class 'int'>, 'split_call_distance': <class 'int'>, 'contig_call_distance': <class 'int'>, 'spanning_call_distance': <class 'int'>, 'input_call_distance': <class 'int'>}, contig_call_distance=0, flanking_call_distance=0, input_call_distance=5, spanning_call_distance=5, split_call_distance=10)

• contig_call_distance
• flanking_call_distance
• spanning_call_distance
• split_call_distance