Order	SeqName	SeqType	IsAE	NBL01_MYCN	NBL05_MYCN	NBL09_MYCN	NBL10_MYCN	NBL02	NBL03	NBL04	NBL06	NBL07	NBL08	NBL11_Rel2	NBL11_Rem1	NBL11_Rel1	NBL12_Rel_Left	NBL12_Rel_Right	NBL13_Rel_Left	NBL13_Rel_Right	NBL14_MYCN_Met	NBL14_MYCN_Pri	NBL15_MYCN_Rel1	SKP01	SKP02	SKP03
1	CYorf15A	Gene	0	0.00	62.01	24.06	14.72	0.00	0.00	8.31	0.00	18.05	26.39	0.00	0.00	0.00	148.05	68.15	106.55	89.35	29.83	27.56	0.00	25.61	47.65	35.64
2	407724	Transcript	0	0.00	0.00	0.00	1.36	0.00	0.00	1.32	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.04	1.47
3	459719	Transcript	0	0.00	57.63	20.90	14.48	0.00	0.00	5.46	0.00	22.29	32.92	0.00	0.00	0.00	156.45	75.40	107.22	121.85	41.60	33.66	0.00	40.91	44.07	29.02
4	447520	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	447202	Transcript	0	0.00	9.01	3.21	2.64	0.00	0.00	2.28	0.00	4.94	2.19	0.00	0.00	0.00	52.29	16.11	37.06	35.35	7.58	6.82	0.00	5.49	15.87	11.20
6	251749	Transcript	0	0.00	88.80	46.75	33.53	0.00	0.00	8.66	15.28	33.65	54.45	0.00	0.00	0.00	8.12	22.99	45.63	17.95	19.07	4.33	0.00	11.68	20.57	7.94
7	IG3_AR2	ActiveIntergenicRegion	0	0.00	14.37	5.63	12.16	0.00	0.00	0.62	0.00	14.50	10.45	0.00	0.00	0.00	6.98	9.53	5.47	5.05	2.13	3.15	0.00	1.41	1.07	0.75
8	ER1a	ExonRegion	0	0.00	0.00	0.00	1.36	0.00	0.00	1.32	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.04	1.47
9	E1_Ac	KnownBoundary	1	0.00	114.58	18.45	9.96	0.00	0.00	10.25	0.00	9.35	18.08	0.00	0.00	0.00	136.09	105.82	188.67	67.13	70.97	67.58	0.00	84.51	44.52	141.28
10	ER1b	ExonRegion	1	0.00	40.35	7.62	4.56	0.00	0.00	4.92	0.00	2.82	5.45	0.00	0.00	0.00	52.89	28.47	72.26	27.03	6.29	28.07	0.00	34.16	19.40	47.35
11	ER1c	ExonRegion	0	0.00	34.73	7.94	3.69	0.00	0.00	4.47	0.00	3.51	12.65	0.00	0.00	0.00	55.74	29.97	96.12	45.88	8.43	26.76	0.00	44.14	18.92	61.35
12	E1_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	ER1d	ExonRegion	1	0.00	6.63	6.57	2.74	0.00	0.00	0.00	0.00	9.92	7.65	0.00	0.00	0.00	56.64	30.83	28.74	74.65	24.57	10.28	0.00	35.46	7.88	12.28
15	E1b_E3a	KnownJunction	0	0.00	9.67	8.60	5.03	0.00	0.00	0.00	0.00	18.40	18.08	0.00	0.00	0.00	136.09	67.62	74.42	126.69	54.26	24.66	0.00	30.64	27.74	34.66
16	ER2a	ExonRegion	0	0.00	5.90	0.06	0.86	0.00	0.00	0.00	0.00	2.16	0.08	0.00	0.00	0.00	19.91	14.55	27.72	20.56	2.33	0.52	0.00	0.91	2.08	2.44
17	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.69	0.00	0.00	0.00	0.00	26.72	4.82	7.86	26.18	2.45	4.80	0.00	0.00	4.96	0.00
18	E3_Ab	NovelBoundary	0	0.00	11.97	8.19	4.89	0.00	0.00	2.25	0.00	16.61	18.32	0.00	0.00	0.00	80.41	27.69	55.28	51.05	59.20	21.18	0.00	29.96	25.04	34.15
19	ER3a	ExonRegion	0	0.00	13.85	9.80	5.71	0.00	0.00	0.00	0.00	20.15	15.77	0.00	0.00	0.00	132.47	53.85	75.60	111.41	62.71	22.70	0.00	43.11	31.25	31.20
20	ER3b	ExonRegion	0	0.00	37.83	12.00	9.03	0.00	0.00	7.51	0.00	16.29	19.66	0.00	0.00	0.00	153.82	64.34	155.71	90.94	68.17	39.67	0.00	47.67	38.18	55.23
21	E3_Da	KnownBoundary	0	0.00	75.38	21.02	22.84	0.00	0.00	19.74	0.00	30.76	32.85	0.00	0.00	0.00	237.15	59.58	150.47	158.58	92.52	87.53	0.00	83.34	36.80	23.90
22	E3_Db	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	E3b_E3d	KnownJunction	0	0.00	81.83	14.78	18.75	0.00	0.00	7.68	0.00	25.06	46.55	0.00	0.00	0.00	208.19	73.68	178.67	151.66	59.07	58.64	0.00	78.77	53.27	25.61
24	E3b_E3e	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	ER3c	ExonRegion	1	0.00	62.36	19.61	20.44	0.00	0.00	21.18	0.00	28.82	34.41	0.00	0.00	0.00	251.74	52.22	177.34	185.95	106.55	87.07	0.00	89.62	49.31	42.09
26	ER3d	ExonRegion	0	0.00	76.30	17.55	25.35	0.00	0.00	20.87	0.00	30.83	41.11	0.00	0.00	0.00	318.91	87.39	236.82	252.06	94.75	118.37	0.00	118.47	62.76	57.21
27	ER3e	ExonRegion	0	0.00	21.12	9.56	7.06	0.00	0.00	6.84	0.00	9.97	6.50	0.00	0.00	0.00	110.23	28.95	75.61	59.32	17.98	15.14	0.00	15.55	40.56	31.16
28	E3_Ad	KnownBoundary	0	0.00	12.56	8.66	3.63	0.00	0.00	11.53	0.00	4.80	9.83	0.00	0.00	0.00	146.74	38.32	118.94	95.65	40.00	19.29	0.00	47.57	48.56	35.25
29	ER3f	ExonRegion	0	0.00	74.09	27.82	17.72	0.00	0.00	10.89	0.00	25.92	39.62	0.00	0.00	0.00	335.00	121.76	236.31	209.90	101.75	57.93	0.00	90.79	58.01	67.89
30	E3_Dc	KnownBoundary	0	0.00	61.37	20.34	25.01	0.00	0.00	17.31	0.00	21.35	37.93	0.00	0.00	0.00	177.29	102.97	148.76	188.97	62.68	47.62	0.00	37.31	37.05	44.47
31	ER3g	ExonRegion	0	0.00	132.39	53.63	31.42	0.00	0.00	14.14	0.00	35.76	59.41	0.00	0.00	0.00	224.89	129.49	147.03	134.39	28.50	41.08	0.00	18.76	87.37	43.54
32	E3_Ae	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	ER3h	ExonRegion	0	0.00	261.99	52.69	31.54	0.00	0.00	12.91	0.00	20.59	53.04	0.00	0.00	0.00	147.25	148.37	105.43	87.02	18.79	26.19	0.00	18.36	45.84	29.53
34	E3_Dd	KnownBoundary	0	0.00	32.30	25.52	17.25	4.33	0.00	6.14	13.68	21.12	38.41	8.05	0.00	0.00	15.89	25.59	31.70	25.71	18.82	12.52	3.26	17.36	5.69	3.84
35	E3d_E3f	KnownJunction	0	0.00	88.80	46.75	33.53	0.00	0.00	8.66	15.28	33.65	54.45	0.00	0.00	0.00	8.12	22.99	45.63	17.95	19.07	4.33	0.00	11.68	20.57	7.94
36	E3_Af	KnownBoundary	0	3.48	57.49	30.42	17.88	4.33	0.00	6.49	15.81	11.31	36.24	18.37	7.65	0.00	48.15	17.92	43.41	38.99	21.22	8.56	15.92	14.64	29.02	0.00
37	ER3i	ExonRegion	0	0.00	111.17	45.75	20.90	0.00	0.00	7.50	0.00	11.12	35.55	0.00	0.00	0.00	100.15	76.40	72.32	50.61	12.93	25.48	0.00	22.04	31.25	17.62
38	ER3j	ExonRegion	0	0.00	67.93	24.18	10.61	0.00	0.00	5.47	0.00	7.34	19.98	0.00	0.00	0.00	64.50	43.74	49.21	26.53	6.79	15.80	0.00	7.71	24.72	8.25
39	E3e_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	Ix	Intron	0	0.00	31.97	14.01	6.79	0.00	0.00	5.24	0.00	10.26	20.31	0.00	0.00	0.00	119.00	42.31	44.51	42.09	7.54	10.25	0.00	5.73	38.69	20.72
41	Ix_AR1	ActiveIntronRegion	0	0.00	27.60	17.30	9.17	0.00	0.00	6.03	0.00	13.39	26.45	0.00	0.00	0.00	136.94	53.01	47.01	44.37	8.33	14.26	0.00	7.17	46.82	25.89
42	Ix_SR1	SilentIntronRegion	0	0.00	9.96	1.72	1.16	0.00	0.00	0.66	0.00	3.21	3.10	0.00	0.00	0.00	45.07	7.25	8.17	9.74	1.02	3.03	0.00	0.33	8.75	3.23
43	Ix_AR2	ActiveIntronRegion	0	0.00	41.85	10.80	3.99	0.00	0.00	4.71	0.00	6.54	13.47	0.00	0.00	0.00	102.85	31.17	45.96	43.32	7.28	5.24	0.00	4.31	30.72	15.38
44	ER4a	ExonRegion	0	0.00	17.56	12.32	5.29	0.00	0.00	2.22	0.00	2.25	5.07	0.00	0.00	0.00	14.31	15.21	4.98	2.53	0.59	3.30	0.00	1.96	2.83	2.22
45	E4_Da	KnownBoundary	0	0.00	18.22	9.82	2.06	0.00	0.00	2.25	0.00	0.00	7.15	0.00	0.00	0.00	0.00	0.00	4.10	4.77	1.58	0.00	0.00	0.00	10.04	3.59
46	ER4b	ExonRegion	0	0.00	15.93	0.00	0.00	0.00	0.00	1.07	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
47	E4_Db	KnownBoundary	0	0.00	21.51	1.66	2.06	0.00	0.00	0.00	0.00	1.74	0.00	0.00	0.00	0.00	0.00	0.00	4.36	0.00	0.00	0.00	0.00	0.00	0.00	0.00
48	ER4c	ExonRegion	0	0.00	3.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
49	ER4d	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00