Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AF011889.1 Gene 0 1.63 0.76 6.48 12.43 2.60 1.00 3.33 9.21 10.27 14.03 3.54 0.72 1.13 5.02 5.27 3.83 5.10 7.22 20.23 7.85 10.77 2.26 7.64 2 436708 Transcript 0 1.55 0.15 6.66 12.02 0.57 0.55 2.30 9.32 8.58 12.52 3.83 2.82 1.20 7.04 6.88 5.82 3.69 5.62 35.11 8.27 8.94 1.59 11.20 3 447209 Transcript 0 1.09 0.00 3.16 8.42 0.00 0.85 5.36 4.44 5.10 5.95 1.53 0.00 0.00 3.12 7.42 0.00 1.46 1.26 4.42 3.98 3.79 4.74 12.04 4 431214 Transcript 0 0.77 0.91 7.52 9.81 0.70 1.84 1.69 7.51 7.72 12.84 3.41 0.25 1.21 5.46 2.96 2.34 5.57 6.91 17.17 8.79 8.94 3.45 3.02 5 451969 Transcript 0 0.01 0.00 0.99 3.66 0.00 0.00 1.22 0.54 0.53 1.57 0.34 0.00 0.10 0.23 0.35 0.11 0.00 0.40 0.93 0.38 0.63 0.00 0.00 6 ER1a ExonRegion 0 0.00 0.68 4.03 0.13 0.00 0.00 1.20 4.61 1.35 1.09 3.77 1.24 0.00 5.18 6.77 1.13 0.31 1.58 19.87 13.07 9.34 2.08 8.11 7 ER1b ExonRegion 0 1.66 2.91 12.20 12.31 0.00 0.75 6.85 14.25 19.94 22.76 3.98 2.12 0.00 8.97 10.36 9.61 10.61 9.30 51.62 14.11 18.71 6.00 24.09 8 E1_Da NovelBoundary 0 3.11 3.35 6.03 8.49 3.40 2.90 3.58 2.09 1.50 2.63 2.21 0.00 0.00 0.00 0.00 7.95 0.00 7.79 42.54 0.00 4.94 6.25 3.41 9 E1a_E3a KnownJunction 0 6.52 0.00 15.88 38.56 0.00 2.38 9.54 18.03 17.19 28.98 5.00 6.30 6.01 19.48 11.13 12.48 11.22 10.57 99.30 13.74 16.56 3.12 26.89 10 E1a_E4a KnownJunction 0 0.00 0.00 1.83 1.40 0.00 0.00 0.00 2.22 1.27 0.00 2.32 0.00 0.00 2.30 22.25 0.00 4.39 0.00 0.00 0.00 0.00 8.14 32.01 11 I1_AR1 ActiveIntronRegion 0 1.16 0.00 0.00 0.00 2.93 1.01 0.00 0.00 0.00 0.00 2.12 0.00 0.00 0.75 0.00 1.63 1.81 0.00 19.21 3.50 4.83 0.00 3.22 12 ER2a ExonRegion 0 0.95 0.45 0.77 2.29 0.60 0.82 1.21 2.33 1.65 1.31 0.86 0.00 1.73 1.71 0.99 0.66 0.00 2.28 6.47 1.92 6.41 0.00 3.28 13 E2_Da NovelBoundary 0 3.11 0.00 4.82 1.53 4.16 0.00 1.81 1.73 2.52 0.00 2.26 0.00 0.00 0.00 0.00 0.00 0.00 4.73 21.93 3.00 0.00 0.00 4.18 14 E2a_E3a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.38 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.74 10.67 6.30 0.00 8.19 15 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 ER3a ExonRegion 0 1.23 0.08 13.40 21.42 2.87 0.35 0.78 21.86 21.06 32.53 5.19 0.71 0.00 8.09 7.59 6.76 6.93 13.40 56.38 14.53 18.81 2.72 16.83 17 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER4a ExonRegion 0 2.63 1.75 18.27 26.29 18.55 5.66 15.39 19.58 29.11 37.35 9.40 2.54 0.00 16.27 19.31 12.50 9.62 20.83 65.90 21.57 32.49 10.74 29.11 19 E4_Da NovelBoundary 0 3.78 3.35 8.69 5.46 3.82 7.84 8.21 4.56 11.37 16.49 2.32 0.00 0.00 2.47 0.00 0.00 8.98 0.00 18.45 15.21 5.13 0.00 7.77 20 E4a_E5a KnownJunction 0 0.00 0.00 14.49 23.41 0.00 7.84 3.89 17.42 12.38 19.21 5.32 0.00 0.00 4.94 0.00 0.00 4.02 8.37 31.53 5.43 4.88 5.69 3.59 21 E4a_E6a KnownJunction 0 0.00 0.00 5.85 20.24 0.00 2.56 16.08 11.09 12.59 17.86 2.26 0.00 0.00 7.06 0.00 0.00 0.00 1.99 13.27 11.95 11.37 6.06 4.10 22 E4a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.09 3.30 0.00 5.21 5.85 0.00 2.47 8.90 8.72 0.00 2.57 0.00 0.00 0.00 0.00 4.18 23 ER5a ExonRegion 0 3.70 2.05 15.47 17.43 3.63 1.47 4.41 14.11 15.33 20.80 7.63 1.51 5.56 7.59 11.74 6.53 7.14 17.11 26.27 18.60 15.35 5.78 7.30 24 E5a_E6a KnownJunction 0 0.00 2.96 11.59 10.32 0.00 0.00 0.00 3.61 7.75 24.74 0.00 0.00 0.00 12.30 0.00 4.36 8.70 13.68 30.97 18.54 12.05 8.70 0.00 25 E6_Aa NovelBoundary 0 0.00 3.35 19.43 7.13 7.81 4.77 8.13 11.30 2.95 9.00 0.00 6.30 0.00 14.95 8.90 12.99 0.00 8.71 18.45 18.15 3.03 2.94 4.10 26 ER6a ExonRegion 0 3.95 3.35 9.65 22.12 12.07 4.07 5.54 13.09 25.05 31.15 7.24 0.00 2.12 13.07 10.90 10.40 18.60 18.18 59.28 20.86 23.89 9.20 19.66 27 E6_Da NovelBoundary 0 22.30 3.22 22.03 47.08 16.38 5.34 28.13 30.23 29.40 43.84 26.64 18.91 21.43 7.36 13.35 8.72 11.59 19.81 71.63 38.61 30.27 3.12 21.51 28 E6a_E7a KnownJunction 0 0.00 6.64 3.13 3.30 8.66 0.00 0.00 11.50 15.19 17.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.51 4.71 0.00 8.34 3.12 19.72 29 I6 Intron 0 9.47 3.59 8.67 18.74 7.62 4.23 9.52 11.53 11.48 23.41 6.55 3.01 5.76 10.77 8.40 8.47 8.95 15.33 34.12 21.93 18.81 2.83 13.14 30 I6_AR1 ActiveIntronRegion 0 13.48 4.92 12.44 22.32 11.76 4.84 14.26 15.85 14.16 31.55 9.35 3.30 9.30 14.49 11.64 12.41 14.51 19.80 43.40 30.39 23.22 3.21 18.08 31 I6_SR2 SilentIntronRegion 0 3.04 1.46 2.62 13.14 0.96 3.29 1.90 4.63 7.27 10.44 2.08 2.56 0.00 4.84 3.19 2.13 0.00 8.25 19.45 8.41 11.87 2.24 5.25 32 E7_Ab NovelBoundary 0 13.48 9.21 43.76 53.94 10.95 0.00 24.11 39.97 68.95 68.20 16.48 0.00 8.28 24.84 44.26 18.46 20.85 71.18 60.14 44.61 29.96 8.82 32.01 33 ER7a ExonRegion 0 0.08 3.27 7.83 16.99 6.40 0.52 1.61 14.07 25.98 27.28 4.00 1.24 0.00 3.48 5.60 8.28 8.37 15.44 4.66 3.12 8.19 1.71 12.69 34 ER7b ExonRegion 0 6.72 1.44 20.00 56.21 10.54 3.28 19.09 35.57 32.12 48.39 13.51 4.56 3.83 17.02 14.89 10.43 16.68 25.35 39.51 21.97 35.03 4.66 16.49 35 E7_Da KnownBoundary 0 3.41 0.00 19.37 27.87 4.24 0.00 3.75 38.32 28.10 46.63 9.79 12.60 6.82 15.89 6.30 17.00 23.47 24.00 72.10 21.99 32.93 9.37 33.72 36 E7_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 E7b_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 E7b_E8b KnownJunction 0 3.26 0.00 1.80 3.63 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.78 0.00 0.00 0.00 0.00 0.00 39 ER7c ExonRegion 0 2.26 0.00 4.94 26.22 0.09 0.00 0.23 11.92 18.95 23.77 0.00 0.00 0.00 2.58 0.00 3.69 3.53 5.73 0.55 0.29 3.27 1.72 3.75 40 ER7d ExonRegion 0 0.00 0.00 2.80 5.39 0.00 0.90 0.65 7.60 9.20 9.32 6.64 0.00 0.00 6.25 5.02 2.46 13.58 0.00 7.81 8.27 14.94 0.54 3.92 41 E7_Dc NovelBoundary 0 102.91 28.88 42.75 46.15 40.75 22.20 32.95 56.76 58.88 121.20 16.37 5.85 0.00 50.27 34.12 26.49 31.32 49.25 106.64 79.39 87.54 11.45 89.63 42 ER8a ExonRegion 0 0.04 0.00 2.96 10.73 0.00 0.00 3.52 1.62 1.58 4.70 1.03 0.00 0.00 0.68 0.57 0.00 0.00 1.19 1.33 1.13 1.88 0.00 0.00 43 E8_Ab KnownBoundary 0 13.63 0.00 20.70 19.94 8.15 0.00 2.03 23.58 24.16 30.41 12.74 0.00 0.00 19.48 5.32 23.58 13.28 19.90 136.95 33.05 16.31 6.00 55.14 44 ER8b ExonRegion 0 2.99 0.00 2.03 8.45 0.00 0.61 0.88 2.52 0.40 2.38 0.00 0.00 0.43 0.91 1.69 0.00 0.00 1.05 0.23 0.00 0.92 0.00 0.98 45 E8_Da KnownBoundary 0 39.49 17.96 7.04 6.26 8.23 6.64 12.19 6.28 3.12 2.42 2.68 0.00 12.66 0.00 0.00 4.36 0.00 15.92 8.85 0.00 6.12 0.00 8.11 46 ER8c ExonRegion 0 0.00 0.00 0.00 0.23 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.47 0.34 0.00 0.00 1.47 0.00 0.00 0.00 0.00