Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP5-937E21.3 Gene 0 16.97 10.20 29.31 13.62 10.13 13.00 11.75 13.78 14.43 11.11 31.08 5.96 6.53 29.28 29.46 24.39 23.24 14.65 11.85 10.50 13.08 7.25 9.38 2 450602 Transcript 0 4.71 1.91 16.74 6.92 0.00 1.08 8.77 10.12 5.09 8.79 14.01 0.00 3.41 6.08 6.98 3.91 10.13 12.16 35.16 16.30 17.62 5.05 10.72 3 441248 Transcript 0 5.55 0.99 8.82 9.02 4.65 6.15 6.42 7.94 8.79 5.99 7.76 3.91 1.70 11.63 7.36 8.53 6.41 6.89 12.44 3.85 11.98 5.13 10.67 4 393985 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 423421 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 431132 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 359293 Transcript 0 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 423540 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 434353 Transcript 0 2.56 0.17 0.32 0.00 0.23 0.48 0.69 0.22 0.85 0.15 0.83 0.00 0.00 1.03 0.96 0.46 0.28 0.45 0.01 0.18 0.00 0.00 0.00 10 448332 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 428236 Transcript 0 9.41 0.00 0.00 2.00 3.57 2.38 2.21 0.00 0.00 0.00 2.68 0.00 0.00 9.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 422892 Transcript 0 1.25 0.19 0.62 0.15 0.37 0.49 0.20 0.73 0.17 0.08 0.32 0.00 0.00 0.06 0.52 1.31 0.30 0.63 0.15 0.20 0.10 0.48 0.27 13 ER1a ExonRegion 0 0.98 0.47 0.75 1.36 0.00 0.00 0.41 0.53 0.29 1.06 2.38 0.00 0.00 0.75 0.00 4.57 1.27 2.27 2.45 0.00 1.70 0.00 1.81 14 ER1b ExonRegion 0 7.00 4.02 13.97 8.93 1.89 2.74 5.94 8.12 3.74 9.60 5.69 1.13 1.85 5.66 2.62 7.21 5.68 7.70 28.04 8.25 17.71 4.34 11.48 15 E1_Da KnownBoundary 0 27.56 5.79 33.97 25.27 8.23 5.79 22.96 37.25 10.19 33.87 21.43 0.00 0.00 24.78 18.79 12.65 20.57 20.15 139.11 37.39 48.68 14.70 40.12 16 E1a_E1k KnownJunction 0 8.45 3.35 32.73 12.49 0.00 2.16 17.14 19.72 9.90 16.52 25.64 0.00 6.82 11.42 13.97 3.25 18.98 22.05 67.86 32.60 33.55 10.10 19.63 17 ER1c ExonRegion 0 8.45 1.85 9.17 19.13 5.32 7.69 9.54 10.25 5.85 9.84 0.84 0.00 0.00 4.20 4.00 2.72 3.06 7.39 33.62 5.76 17.81 8.61 21.43 18 E1_Ac KnownBoundary 0 0.00 3.29 1.77 1.66 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 E1_Ad KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 E1_Ae KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.41 5.32 0.00 0.00 0.00 0.00 0.00 0.00 2.82 0.00 21 ER1d ExonRegion 0 0.00 2.03 2.45 2.73 0.00 0.00 0.00 0.00 0.00 2.29 0.00 0.00 0.00 1.62 5.80 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 22 ER1e ExonRegion 0 0.00 2.03 1.68 2.90 0.00 0.00 0.00 1.08 0.00 2.29 0.00 0.00 0.00 1.62 5.80 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 23 E1_Af KnownBoundary 0 6.22 17.69 4.67 3.60 7.39 28.34 20.01 4.64 4.43 1.67 10.00 0.00 0.00 12.13 20.40 16.24 4.49 10.49 18.26 24.74 19.83 6.06 25.01 24 ER1f ExonRegion 0 2.92 7.01 3.85 3.99 2.21 10.94 7.62 3.10 3.02 1.70 5.20 0.00 0.00 7.50 12.01 8.10 2.39 7.01 8.90 10.64 10.03 5.24 10.73 25 ER1g ExonRegion 0 26.39 37.87 17.02 6.06 29.61 72.82 48.72 9.83 10.92 8.41 46.65 0.38 0.00 46.31 47.13 50.92 44.89 23.36 35.39 18.44 27.77 15.65 32.17 26 E1_Ag KnownBoundary 0 13.04 14.47 5.35 0.00 25.72 46.45 35.11 0.00 3.39 4.57 16.79 0.00 0.00 7.42 4.57 36.40 28.05 6.43 32.94 3.13 10.63 13.23 25.35 27 E1_Ah KnownBoundary 0 24.75 6.12 12.15 5.33 23.01 15.33 6.18 4.31 4.28 3.98 47.70 0.00 0.00 11.30 15.20 34.44 46.38 7.96 12.71 8.95 11.49 12.12 15.96 28 ER1h ExonRegion 0 45.51 42.71 26.96 8.86 53.51 108.19 59.58 12.10 19.76 12.04 117.91 4.33 0.00 79.58 132.01 72.82 105.63 30.49 38.22 20.21 24.24 18.75 32.30 29 ER1i ExonRegion 0 11.22 6.04 23.46 7.77 7.37 15.50 6.54 13.24 16.51 10.47 59.31 3.07 5.70 54.89 66.41 40.49 54.56 22.38 15.52 18.38 20.77 9.26 13.95 30 E1_Db KnownBoundary 0 7.19 5.99 37.34 11.35 4.33 8.23 0.00 29.16 15.08 7.87 34.85 5.55 6.49 40.08 57.11 33.15 43.85 28.44 7.72 6.33 20.26 5.14 10.76 31 E1b_E1k KnownJunction 0 0.00 2.89 4.46 0.00 0.00 0.00 0.00 0.00 2.98 1.34 2.37 0.00 12.34 17.19 4.45 8.72 9.54 1.74 9.60 5.82 0.00 0.00 4.35 32 ER1j ExonRegion 0 10.99 10.73 34.02 8.93 8.14 22.43 13.89 24.42 16.37 9.69 42.36 0.55 6.09 45.86 49.38 30.73 42.98 21.47 3.19 13.54 26.59 7.09 5.19 33 E1_Dc KnownBoundary 0 9.04 2.50 12.12 1.27 0.00 4.94 5.03 5.50 3.30 3.60 6.00 0.00 0.00 15.13 9.02 10.34 15.43 6.67 0.00 5.11 7.91 0.00 0.00 34 E1c_E1j KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 E1_Dd KnownBoundary 0 0.00 0.00 2.66 1.90 4.33 2.33 2.16 5.05 3.56 0.00 2.58 0.00 0.00 0.00 10.75 3.76 0.00 2.11 0.00 0.00 2.97 2.33 0.00 36 E1d_E1k KnownJunction 1 14.37 18.35 23.86 9.39 27.84 46.22 42.26 17.37 15.34 5.94 50.07 0.00 6.33 39.56 49.32 12.22 70.69 10.03 0.00 17.71 20.82 9.19 0.00 37 ER1k ExonRegion 1 14.82 12.71 30.02 8.18 16.05 49.51 33.76 30.68 20.38 11.76 45.91 0.00 9.38 44.26 52.95 32.69 68.49 11.09 3.19 20.21 28.10 8.85 0.00 38 ER1l ExonRegion 0 1.51 0.02 2.19 2.00 1.76 5.19 5.13 5.83 4.69 2.33 1.75 0.00 0.35 9.21 7.31 4.65 2.53 3.75 0.00 0.16 5.86 1.04 1.59 39 E1_Ai KnownBoundary 0 10.08 0.00 1.63 3.90 4.16 2.90 0.00 8.46 5.27 4.06 0.00 0.00 0.00 11.48 4.45 0.00 0.00 8.37 0.00 0.00 5.87 0.00 0.00 40 ER1m ExonRegion 0 7.21 0.69 6.36 3.84 2.28 2.73 1.74 7.22 8.26 2.30 7.64 0.29 4.07 14.10 6.25 9.05 10.61 7.40 0.84 2.95 6.28 1.76 0.82 41 E1_De KnownBoundary 0 13.26 2.76 19.01 11.42 20.37 0.00 2.25 1.56 13.02 5.53 15.06 6.15 0.00 27.31 4.45 13.93 0.00 6.30 4.33 0.00 12.11 3.12 7.85 42 E1e_E1k KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 ER1n ExonRegion 0 6.70 1.09 15.11 5.92 6.86 5.57 4.60 7.73 15.84 5.79 20.68 11.74 4.75 21.49 10.77 18.23 13.64 9.52 3.71 5.64 12.28 5.75 8.99 44 E1_Aj KnownBoundary 0 9.85 2.76 1.83 0.00 3.40 0.00 3.71 2.18 0.00 0.00 14.06 17.41 21.26 20.90 5.69 0.00 3.83 0.00 0.00 12.14 2.78 2.63 6.91 45 E1_Ak KnownBoundary 0 0.00 0.00 3.34 0.00 3.99 5.68 4.33 0.00 3.18 0.00 10.06 5.70 0.00 7.77 11.87 4.27 4.39 2.11 4.80 0.00 5.75 0.00 0.00 46 ER1o ExonRegion 0 15.34 6.61 29.72 8.18 16.72 17.88 20.52 21.17 20.38 9.75 51.22 18.40 24.62 47.91 31.19 26.01 36.31 20.33 7.17 16.49 20.38 4.17 9.54 47 E1_Df KnownBoundary 0 17.19 18.55 15.35 15.72 18.85 66.55 46.46 25.67 22.02 14.32 53.07 18.91 0.00 55.57 39.80 53.23 70.87 20.10 11.20 14.25 17.30 13.17 28.43 48 ER1p ExonRegion 0 19.46 25.78 42.30 13.67 34.96 79.86 53.00 33.51 25.82 20.13 93.78 16.62 19.97 86.03 63.45 54.84 95.83 30.93 19.21 29.03 34.62 16.20 22.83 49 E1g_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50 E1g_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51 ER1q ExonRegion 1 14.42 23.89 26.50 17.21 34.12 80.69 44.35 22.58 21.15 16.63 78.28 12.18 0.00 64.96 27.02 53.13 68.91 27.02 11.55 15.29 29.34 10.68 25.88 52 E1h_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 ER1r ExonRegion 0 2.12 3.64 6.64 0.00 5.35 15.35 4.95 6.46 2.86 3.92 27.37 0.91 0.00 14.53 10.99 14.23 7.12 4.18 3.19 2.13 8.58 0.00 4.79 54 E2_Aa NovelBoundary 0 3.26 0.00 3.64 8.26 0.00 0.00 0.00 2.55 1.79 2.71 13.27 6.30 0.00 9.42 0.00 25.98 4.77 2.57 0.00 3.26 0.00 0.00 4.35 55 ER2a ExonRegion 0 7.67 0.50 0.95 0.00 0.69 1.44 2.06 0.67 2.55 0.44 2.50 0.00 0.00 3.08 2.87 1.39 0.85 1.35 0.03 0.55 0.00 0.00 0.00 56 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57 E3_Aa NovelBoundary 0 9.71 0.00 6.92 2.66 7.05 4.77 1.72 2.55 3.12 1.13 12.32 6.15 0.00 6.95 4.82 22.81 0.00 6.22 0.00 0.00 3.03 8.14 3.84 58 ER3a ExonRegion 0 33.36 26.74 68.42 23.40 21.18 27.12 47.14 29.60 28.64 21.66 74.96 9.08 15.30 84.80 80.12 48.69 53.34 25.97 14.08 23.10 30.42 14.13 15.65 59 E3a_E4a KnownJunction 0 124.76 33.48 63.51 35.06 29.37 42.13 55.69 23.70 32.38 31.80 64.28 6.30 15.10 107.78 88.26 23.50 63.96 33.78 26.35 18.02 20.08 6.25 19.21 60 E3a_E4c KnownJunction 0 9.41 0.00 0.00 2.00 3.57 2.38 2.21 0.00 0.00 0.00 2.68 0.00 0.00 9.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61 ER4a ExonRegion 1 52.08 18.62 48.62 17.95 8.59 18.93 25.01 27.83 26.44 21.89 54.20 7.32 6.08 44.54 40.62 16.91 50.07 18.27 7.18 7.55 18.65 9.98 10.55 62 E4_Da KnownBoundary 1 84.98 25.13 146.77 51.58 34.38 47.47 58.25 71.26 66.17 50.66 153.30 10.50 51.30 127.91 79.36 73.48 143.71 79.42 8.38 41.48 135.60 24.74 47.12 63 E4_Ab KnownBoundary 0 184.11 96.10 157.56 86.50 61.88 73.20 27.65 58.04 49.83 59.39 137.03 29.86 20.94 217.91 107.05 122.36 137.07 89.71 52.61 73.50 117.62 72.81 55.74 64 ER4b ExonRegion 1 49.01 23.86 46.09 18.35 15.33 20.03 19.04 25.13 25.03 21.00 36.28 3.00 8.84 50.85 20.76 18.06 47.10 62.97 24.50 17.18 35.94 16.43 4.29 65 ER4c ExonRegion 0 69.48 34.37 83.27 42.46 16.40 17.34 21.85 24.47 36.40 28.26 41.47 8.97 17.09 90.88 82.23 53.75 50.55 82.83 34.72 25.96 21.82 17.98 21.77 66 E4_Ac KnownBoundary 0 54.45 56.11 99.85 49.68 31.07 18.34 17.22 30.85 46.79 45.21 62.70 17.86 0.00 57.39 34.86 52.89 35.06 39.38 31.62 37.01 17.79 0.00 32.78 67 ER4d ExonRegion 0 48.99 39.49 43.39 23.88 19.59 21.89 29.09 16.26 26.72 19.63 47.20 9.90 10.85 42.50 45.54 27.45 45.29 30.53 17.45 13.69 12.13 12.90 12.84 68 E4b_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 69 ER5a ExonRegion 0 24.32 21.91 58.37 39.26 39.57 49.16 57.35 24.74 39.00 28.19 50.09 7.75 15.14 52.26 48.61 55.58 24.96 61.24 29.12 22.99 13.96 24.45 21.95 70 E5_Da KnownBoundary 0 111.50 115.83 295.94 183.66 168.59 201.53 106.74 122.11 98.96 104.22 288.81 64.52 118.99 222.62 221.89 343.59 192.52 113.46 134.87 107.96 136.65 127.18 100.56 71 ER5b ExonRegion 1 50.42 50.16 104.94 67.55 60.17 63.62 41.08 38.69 40.82 25.32 77.02 45.40 53.03 147.09 152.06 151.65 46.13 47.52 50.88 39.88 20.34 45.41 49.92 72 E5_Db KnownBoundary 0 180.70 120.50 410.57 195.58 173.94 130.78 121.01 191.82 112.93 130.33 389.89 214.87 103.08 429.10 349.71 333.25 193.64 179.91 134.69 171.36 147.96 197.11 187.88 73 ER5c ExonRegion 1 19.28 17.74 114.95 42.13 18.67 12.59 17.37 43.61 29.49 25.45 78.39 19.82 28.31 67.94 90.81 96.76 35.12 31.28 21.68 33.68 30.88 14.46 26.93 74 E5_Dc KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.45 0.00 0.00 0.00 0.00 0.00 75 E5c_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 76 ER5d ExonRegion 0 47.70 36.74 130.27 48.18 29.46 22.01 19.54 47.91 43.18 46.20 122.27 29.49 19.68 85.69 86.19 73.41 60.85 19.55 22.16 30.86 32.36 20.82 13.23 77 E5_Dd KnownBoundary 0 111.58 70.84 431.36 168.08 155.94 96.82 81.52 115.95 110.65 109.19 263.49 82.23 52.59 147.63 211.26 152.78 149.51 75.07 122.73 113.20 85.87 82.60 41.32 78 ER5e ExonRegion 0 31.34 15.06 58.38 27.86 20.66 19.11 9.95 23.06 24.94 21.54 59.93 12.48 10.63 26.29 41.99 33.58 35.19 11.21 14.97 15.93 12.24 6.05 7.11 79 ER5f ExonRegion 0 0.00 2.03 0.00 0.00 0.00 7.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 80 ER6a ExonRegion 0 2.51 0.37 1.24 0.30 0.74 0.98 0.40 1.47 0.34 0.16 0.64 0.00 0.00 0.12 1.04 2.63 0.59 1.27 0.29 0.39 0.20 0.96 0.54