Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TMLHE Gene 0 18.80 27.08 38.93 24.45 14.89 26.54 18.56 14.50 20.94 24.82 39.18 44.29 29.14 40.37 23.39 47.50 38.76 39.26 22.86 42.19 35.29 27.98 29.55 2 474677 Transcript 0 0.00 0.83 0.01 0.28 0.00 0.00 0.01 0.00 0.25 0.23 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 1.16 0.30 0.00 0.00 3 334398 Transcript 0 26.53 45.92 35.30 35.18 10.24 38.12 20.62 18.51 22.53 37.65 42.98 46.11 27.98 50.26 40.04 55.20 61.82 54.70 37.77 58.99 37.57 29.70 37.54 4 461075 Transcript 0 1.24 0.22 2.53 0.76 0.70 0.29 1.06 0.96 1.58 0.55 2.48 1.14 0.00 0.78 1.08 2.70 0.88 1.57 0.51 2.15 1.65 0.11 2.04 5 369439 Transcript 0 8.69 8.06 11.64 3.80 0.82 1.13 4.50 2.22 2.51 1.57 5.07 11.92 7.21 11.48 9.81 1.35 6.79 2.00 6.13 1.96 2.94 16.76 3.90 6 487422 Transcript 0 2.33 0.54 0.77 2.39 1.03 0.00 0.75 0.72 2.29 2.02 3.73 3.96 1.85 1.04 1.60 1.09 2.89 0.38 0.88 1.20 1.23 1.72 0.52 7 449645 Transcript 0 0.03 3.29 0.00 0.00 0.00 0.04 0.87 0.00 0.00 0.84 0.53 0.00 1.59 1.69 1.68 0.97 0.55 0.68 1.02 0.00 0.68 1.58 1.00 8 ER1a ExonRegion 0 0.00 1.66 0.01 0.55 0.00 0.00 0.02 0.00 0.50 0.47 0.02 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 2.32 0.60 0.00 0.00 9 E1a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 E2_Aa NovelBoundary 0 6.67 3.03 2.75 0.00 0.00 31.52 8.08 2.42 1.42 1.26 7.79 0.00 0.00 2.12 8.90 8.03 0.00 0.00 18.17 3.20 0.00 2.88 4.01 11 ER2a ExonRegion 1 29.43 35.93 16.57 6.04 9.49 35.80 29.47 2.51 15.73 17.64 65.72 6.49 15.75 36.08 41.52 84.21 48.65 64.19 32.08 52.03 35.47 43.65 82.58 12 E2_Ab KnownBoundary 1 67.49 65.65 10.88 6.03 7.89 53.38 57.63 2.34 8.62 14.26 105.97 6.30 33.60 78.35 75.16 160.81 66.95 55.38 78.68 97.67 64.93 70.11 132.82 13 E2_Ac KnownBoundary 1 170.92 122.48 40.30 31.96 83.02 180.86 116.02 25.34 48.73 40.40 244.48 12.60 40.26 101.18 85.42 371.70 184.95 221.98 127.63 116.46 184.03 87.75 271.97 14 ER2b ExonRegion 1 102.89 102.36 39.76 24.91 43.26 125.72 96.13 19.11 41.58 38.74 215.09 12.03 39.08 107.55 90.74 319.83 173.11 197.30 115.20 130.97 155.48 98.85 245.86 15 ER2c ExonRegion 1 51.57 35.00 29.96 18.90 23.23 66.43 40.54 22.39 33.42 36.23 103.19 9.68 9.99 34.37 24.58 151.96 93.09 136.52 48.87 54.07 95.15 33.48 96.01 16 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 E2a_E4a KnownJunction 0 7.26 0.00 17.74 2.63 0.00 16.18 0.00 14.58 11.46 29.36 57.80 18.61 6.66 11.48 18.91 28.20 56.76 13.22 12.14 25.50 74.87 5.76 11.78 18 ER3a ExonRegion 0 2.49 0.43 5.06 1.52 1.40 0.59 2.12 1.93 1.94 1.09 4.96 2.29 0.00 1.56 2.15 5.40 1.76 3.15 1.02 4.31 3.29 0.22 4.08 19 E3_Da NovelBoundary 0 0.00 0.00 4.82 5.16 0.00 0.00 0.00 4.11 1.77 3.14 0.00 5.70 6.33 2.47 0.00 4.36 13.18 0.00 0.00 8.37 0.00 0.00 13.06 20 ER4a ExonRegion 1 13.40 11.30 37.26 24.63 6.56 15.33 10.01 23.31 40.34 42.95 132.31 14.63 23.07 73.07 57.66 132.17 116.42 90.89 55.82 102.72 130.44 55.34 87.91 21 E4_Da KnownBoundary 1 32.60 24.54 51.45 37.56 41.17 49.35 24.16 27.40 39.50 49.32 54.43 31.51 71.91 91.71 88.26 394.43 105.94 232.39 155.77 113.01 77.53 73.91 215.12 22 ER4b ExonRegion 1 15.89 22.11 54.68 31.71 32.79 46.90 27.88 26.00 37.66 35.05 52.60 41.77 39.96 61.03 42.62 154.30 60.49 142.07 56.44 74.02 104.60 48.48 93.93 23 E4b_E5a KnownJunction 0 6.52 10.98 57.51 29.37 53.23 95.68 63.82 29.04 32.93 38.63 59.17 67.52 39.93 50.50 59.71 82.71 70.31 81.46 21.18 98.75 105.15 27.19 32.01 24 ER5a ExonRegion 0 35.73 60.27 78.30 44.44 27.12 68.87 40.63 26.94 33.38 44.30 88.45 88.89 60.78 86.03 57.24 82.82 75.66 87.45 29.26 98.95 105.24 43.12 44.22 25 E5_Da KnownBoundary 0 0.00 0.00 6.80 1.73 4.33 0.00 4.50 0.00 1.79 1.64 3.95 0.00 6.82 4.94 4.45 3.67 3.46 1.82 0.00 2.49 0.00 0.00 4.18 26 E5a_E6a KnownJunction 1 75.79 66.04 67.68 45.91 35.91 36.63 22.08 33.72 35.59 60.17 90.34 124.09 199.66 98.53 57.36 93.82 53.86 95.09 34.92 131.22 85.87 59.52 43.28 27 ER5b ExonRegion 0 2.33 0.54 0.77 2.39 1.03 0.00 0.75 0.72 2.29 2.02 3.73 3.96 1.85 1.04 1.60 1.09 2.89 0.38 0.88 1.20 1.23 1.72 0.52 28 ER6a ExonRegion 0 46.20 55.18 123.59 52.45 35.44 53.59 39.39 29.91 41.88 54.56 116.73 130.05 115.39 120.52 68.03 125.84 107.54 118.99 62.31 90.18 97.54 78.59 60.20 29 E6a_E7a KnownJunction 0 44.30 83.60 96.03 46.98 65.79 36.46 40.28 22.30 41.41 50.58 89.55 84.93 66.23 129.79 82.08 76.13 112.30 108.23 54.78 76.83 96.13 76.30 60.18 30 ER7a ExonRegion 0 37.34 68.53 100.61 53.63 46.69 60.39 46.66 20.37 47.30 43.00 104.55 124.83 98.45 126.30 75.19 106.75 91.98 97.24 46.56 81.45 88.09 70.34 59.98 31 E7a_E8a KnownJunction 0 33.71 59.92 86.25 64.13 56.20 24.08 65.76 8.87 38.17 39.30 75.55 115.54 51.94 125.43 54.14 90.06 60.12 86.89 38.12 90.63 86.36 75.26 55.49 32 E8_Aa NovelBoundary 1 0.00 0.00 0.00 1.80 0.00 2.78 2.12 2.38 1.65 0.00 0.00 12.00 27.11 2.35 0.00 3.93 4.02 0.00 0.00 2.81 0.00 0.00 0.00 33 ER8a ExonRegion 0 38.54 62.15 71.34 53.43 29.28 52.45 37.48 28.46 41.21 51.24 86.03 110.01 68.71 93.83 65.60 74.22 90.41 79.79 39.07 81.17 65.98 66.93 46.23 34 E8_Da NovelBoundary 1 18.30 15.00 15.05 14.72 15.37 0.00 21.95 1.68 9.95 9.32 9.48 36.76 19.97 4.94 4.45 20.25 0.00 0.00 18.82 6.46 0.00 6.25 4.35 35 E8a_E9a KnownJunction 0 14.45 6.71 15.91 1.80 0.00 0.00 4.50 2.34 1.13 0.00 7.90 12.60 6.82 15.07 15.45 0.00 8.70 0.00 9.22 0.00 2.97 22.66 3.93 36 E8a_E10a KnownJunction 0 41.41 76.24 41.99 47.25 4.16 59.80 24.25 19.63 28.62 46.58 42.27 61.97 50.48 68.57 65.76 39.99 90.23 62.93 54.50 74.78 35.34 32.33 19.80 37 Ix_AR1 ActiveIntronRegion 0 6.38 7.33 4.47 8.31 3.36 0.92 11.24 2.59 2.77 7.53 2.33 7.44 19.64 7.66 4.40 1.48 3.30 0.93 4.00 8.98 1.11 5.76 1.48 38 E9_Aa NovelBoundary 0 7.56 6.51 9.52 4.56 25.47 2.61 10.11 9.57 4.43 3.33 2.53 6.30 12.34 4.59 4.45 3.67 4.77 5.84 0.00 6.39 3.15 3.00 4.18 39 ER9a ExonRegion 0 2.93 9.42 7.37 5.80 1.64 2.25 4.49 2.10 3.90 3.14 2.24 11.24 7.60 7.89 4.18 2.70 4.89 4.00 3.03 3.92 2.92 10.87 3.87 40 E10_Ab NovelBoundary 0 14.67 27.56 28.33 24.77 0.00 17.49 16.03 10.15 12.38 24.18 10.27 28.06 6.33 6.83 13.47 6.66 21.88 27.36 17.32 29.34 9.64 2.39 6.66 41 ER10a ExonRegion 0 31.14 66.82 41.84 57.05 2.68 42.18 24.78 20.74 24.70 49.48 48.32 73.60 39.53 58.70 47.25 53.92 85.35 69.42 33.67 66.57 32.43 28.28 22.65 42 ER10b ExonRegion 0 22.94 41.29 41.38 32.49 8.94 26.72 17.54 17.23 18.38 36.34 42.10 43.03 15.56 47.04 26.77 48.21 41.71 44.92 33.83 41.83 44.26 30.65 21.47 43 E10_Da KnownBoundary 0 2.96 2.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 2.16 0.00 0.00 2.18 0.00 0.00 4.77 0.00 0.00 0.00 0.00 13.10 0.00 44 E10a_E11a KnownJunction 0 14.22 27.23 41.28 39.82 19.95 28.51 7.73 34.05 21.53 50.50 40.22 44.86 13.64 61.39 34.74 68.10 62.74 62.47 51.67 64.17 71.23 24.31 40.29 45 ER10c ExonRegion 0 0.06 6.59 0.00 0.00 0.00 0.07 1.75 0.00 0.00 1.68 1.06 0.00 3.19 3.38 3.37 1.94 1.10 1.36 2.04 0.00 1.35 3.17 2.00 46 E10b_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47 ER11a ExonRegion 0 15.94 37.37 33.53 26.04 12.38 26.92 16.36 14.07 16.07 28.87 21.34 29.93 18.42 39.40 11.11 38.26 36.19 38.80 26.84 39.74 25.41 29.66 22.63 48 E11_Da KnownBoundary 0 61.57 73.93 40.27 40.15 36.33 40.20 30.25 9.78 20.54 37.47 39.38 12.90 33.60 68.40 17.31 95.27 71.34 52.69 51.39 87.31 21.13 87.50 57.79 49 ER11b ExonRegion 0 16.44 23.41 34.81 25.75 14.92 24.30 16.86 15.64 22.08 24.05 18.39 43.63 20.49 26.57 10.91 29.77 22.11 14.51 16.91 37.40 13.40 19.94 22.36