Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP11-308D16.1 Gene 0 8.61 8.05 15.46 5.79 8.73 9.30 9.03 7.63 6.63 5.61 6.26 3.35 5.69 5.88 8.90 9.83 7.64 10.91 13.60 13.01 5.34 3.70 8.99 2 440141 Transcript 0 7.92 5.92 12.11 3.31 7.65 6.44 9.10 5.52 5.39 5.25 6.75 4.27 8.47 6.37 11.79 13.96 9.42 14.19 19.46 16.08 6.52 3.32 10.36 3 424306 Transcript 0 6.01 12.01 19.26 4.95 9.49 14.49 9.17 8.97 2.90 3.11 5.31 8.31 3.35 4.43 4.45 2.39 5.62 6.88 8.51 5.41 2.32 3.02 5.03 4 431464 Transcript 0 0.00 6.45 7.60 2.06 0.00 0.00 0.95 5.71 2.16 1.57 0.00 0.00 0.00 0.00 2.23 1.75 0.00 1.82 9.60 0.00 2.75 0.00 0.00 5 438602 Transcript 0 0.00 0.68 0.23 0.02 1.68 1.24 0.06 0.65 0.03 0.02 0.00 0.00 0.39 0.31 0.00 0.00 0.00 0.97 0.66 0.89 0.00 1.44 0.00 6 440604 Transcript 0 0.13 0.00 0.11 0.09 0.16 0.22 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 7 ER1a ExonRegion 0 7.29 8.62 6.24 3.61 5.97 6.18 8.86 3.17 3.77 3.42 2.64 3.97 7.03 3.16 9.48 8.26 8.56 6.16 7.83 9.18 3.41 3.04 9.10 8 E1_Ab KnownBoundary 0 3.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 9 ER1b ExonRegion 0 5.13 3.51 2.60 0.43 3.21 6.65 3.44 4.65 1.56 1.73 1.23 0.00 0.00 2.74 4.42 3.79 2.97 0.28 4.14 7.82 0.00 1.67 3.74 10 E1_Ac KnownBoundary 0 30.60 8.16 6.06 2.83 3.82 17.72 9.45 8.79 6.63 2.55 0.00 0.00 0.00 0.00 5.44 0.00 13.00 7.42 15.72 14.64 0.00 6.18 0.00 11 ER1c ExonRegion 0 5.09 3.32 9.02 4.68 5.62 5.53 4.18 3.97 3.20 1.49 3.51 0.94 0.65 3.23 4.30 3.36 7.23 6.35 7.15 7.23 3.85 1.43 3.76 12 E1_Da KnownBoundary 0 2.82 6.58 1.71 1.23 24.19 22.20 12.81 9.65 6.31 3.20 7.32 7.65 5.68 4.83 0.00 7.26 12.16 6.30 9.60 13.42 3.15 3.06 8.11 13 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 E1a_E3a KnownJunction 0 0.00 9.80 6.89 0.00 0.00 0.00 1.90 4.35 3.07 0.00 0.00 0.00 0.00 0.00 4.45 3.50 0.00 3.65 0.00 0.00 0.00 0.00 0.00 15 ER1d ExonRegion 0 8.54 3.22 17.99 3.01 9.33 6.69 9.33 7.87 7.01 7.07 10.87 4.57 9.90 9.58 14.11 19.66 10.28 22.23 31.09 22.99 9.62 3.60 11.63 16 E1_Db NovelBoundary 0 6.82 0.00 22.03 3.06 25.89 7.67 20.71 8.75 4.69 7.66 16.58 17.41 13.64 16.72 0.00 8.72 13.93 5.72 8.28 39.69 5.44 3.12 11.61 17 I1 Intron 0 14.86 12.16 29.23 9.06 19.45 8.03 15.79 13.83 7.94 7.28 6.77 8.21 11.21 7.04 9.81 7.32 8.02 5.21 13.73 12.65 2.40 4.30 4.56 18 I1_SR1 SilentIntronRegion 0 12.13 10.65 21.48 8.31 15.32 6.13 17.21 12.85 7.14 7.38 6.34 8.78 11.13 5.47 8.82 6.07 6.94 4.82 12.73 13.86 2.11 3.06 4.01 19 I1_AR1 ActiveIntronRegion 0 9.98 26.06 33.42 13.95 30.26 10.34 29.00 15.30 6.75 4.84 6.41 10.19 16.27 6.05 12.79 9.73 11.07 6.57 12.80 13.18 1.95 4.20 2.65 20 I1_AR4 ActiveIntronRegion 0 48.49 22.32 96.41 26.36 62.05 23.99 31.35 33.74 20.97 14.65 12.47 20.46 26.64 14.28 16.99 15.49 18.00 8.58 23.29 20.95 1.94 12.96 7.92 21 I1_SR4 SilentIntronRegion 0 34.92 21.01 84.96 19.31 18.73 27.51 26.92 30.54 19.76 7.84 14.50 12.27 28.14 18.68 35.78 23.78 13.75 9.55 31.85 18.44 2.20 6.60 11.75 22 I1_AR5 ActiveIntronRegion 0 29.63 14.24 55.84 11.19 14.11 16.03 13.24 19.57 12.88 5.03 11.55 16.25 25.09 15.46 19.97 15.25 13.25 9.29 24.70 9.92 2.60 4.98 5.72 23 I1_SR6 SilentIntronRegion 0 12.03 12.65 28.16 6.32 18.82 6.70 8.42 10.10 3.73 4.86 3.66 4.38 9.11 7.26 7.09 5.64 4.91 3.23 12.93 6.33 2.38 3.66 4.37 24 I1_SR7 SilentIntronRegion 0 10.62 10.03 21.71 5.37 14.39 6.62 9.10 10.66 7.78 6.92 7.66 3.32 4.52 7.91 10.16 7.59 8.14 5.74 12.90 11.24 3.69 4.96 5.43 25 E2_Aa NovelBoundary 0 6.37 15.39 44.94 15.12 8.57 21.18 12.23 16.31 17.59 7.63 5.05 0.00 6.82 15.83 8.90 23.93 7.95 18.82 40.75 9.08 2.84 2.51 22.62 26 ER2a ExonRegion 0 12.53 11.27 26.69 9.02 12.29 13.03 13.32 11.64 10.16 10.12 11.08 3.69 7.14 10.01 12.03 14.34 10.46 16.66 18.41 20.52 8.65 5.55 13.66 27 E2_Da NovelBoundary 0 43.49 19.67 29.48 10.02 36.25 11.58 29.28 4.27 1.79 2.28 10.53 0.00 0.00 7.42 6.30 7.52 3.93 15.34 27.48 5.37 3.03 6.00 4.35 28 E2a_E3a KnownJunction 0 19.11 30.46 35.19 5.96 20.54 37.36 26.41 27.72 5.76 5.02 12.32 0.00 0.00 2.47 4.45 0.00 8.60 10.24 22.68 6.14 5.25 7.35 3.24 29 ER3a ExonRegion 0 15.39 21.59 44.02 12.75 19.35 19.80 16.85 28.51 13.18 9.18 11.19 11.23 8.36 8.02 13.83 13.45 9.75 16.55 23.30 9.85 5.35 6.09 12.65 30 E3_Da NovelBoundary 0 12.82 9.93 4.55 2.06 11.21 0.00 20.27 2.26 4.11 4.38 5.00 0.00 6.49 2.47 0.00 0.00 8.04 6.84 4.05 8.31 0.00 0.00 4.27 31 E3a_E4a KnownJunction 0 0.00 14.08 26.02 6.56 12.05 18.74 4.28 4.11 0.00 1.24 4.58 18.91 8.28 7.42 4.45 0.00 8.04 7.01 4.24 2.62 0.00 3.12 7.43 32 E3a_E9a KnownJunction 0 0.00 3.09 8.31 4.13 0.00 0.00 0.00 7.06 1.24 3.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.20 0.00 5.50 0.00 0.00 33 ER4a ExonRegion 0 4.23 16.27 26.96 6.81 10.70 15.59 8.61 8.64 1.24 2.29 3.87 17.32 4.69 6.50 2.90 0.00 6.60 7.39 3.19 3.19 0.00 2.08 5.87 34 ER4b ExonRegion 0 0.47 11.75 16.57 7.26 6.15 23.89 6.76 6.27 0.70 1.06 2.02 4.33 1.54 2.96 1.91 0.00 2.02 4.69 12.84 3.52 0.00 0.59 3.99 35 E4_Ac KnownBoundary 0 0.00 9.41 21.35 3.56 4.33 2.67 3.84 1.52 1.79 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 1.78 16.57 0.00 2.47 0.00 0.00 36 ER4c ExonRegion 0 5.63 4.85 12.52 3.49 7.85 3.81 4.86 2.79 1.52 0.00 0.00 6.90 0.00 1.91 1.31 0.00 0.00 2.36 3.19 3.55 0.00 0.00 1.71 37 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 E4_Db NovelBoundary 0 2.82 15.72 7.63 10.69 12.82 2.90 17.31 2.55 1.79 2.31 0.00 6.15 0.00 4.83 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 39 ER4d ExonRegion 0 0.21 0.00 0.74 1.36 1.34 2.20 2.38 1.73 0.25 0.00 0.00 9.96 0.00 0.16 2.90 0.00 0.00 0.00 2.55 0.00 0.00 0.00 0.00 40 Ix Intron 0 6.50 8.72 20.31 9.88 23.10 14.03 18.34 6.72 2.45 1.58 2.13 5.51 5.96 3.98 3.22 2.93 2.87 2.66 6.65 7.40 0.89 2.05 3.74 41 Ix_SR1 SilentIntronRegion 0 4.65 21.39 22.16 11.34 23.77 16.36 21.27 6.36 1.98 1.28 1.57 3.80 7.33 5.05 4.31 1.60 1.19 0.24 8.51 4.28 0.00 0.53 3.33 42 Ix_AR1 ActiveIntronRegion 0 6.15 6.40 25.50 10.65 22.90 15.48 20.09 6.94 2.50 1.47 2.62 7.69 5.48 4.68 3.50 3.71 3.66 4.40 6.68 9.87 1.15 2.39 4.23 43 Ix_SR2 SilentIntronRegion 0 9.18 2.59 6.05 6.73 23.20 8.42 11.48 6.57 2.82 2.18 1.48 1.82 5.91 1.27 1.57 2.27 2.53 0.70 4.87 4.34 1.12 2.66 3.00 44 ER5a ExonRegion 0 0.00 1.82 0.00 0.71 3.30 2.52 0.87 1.76 3.15 1.14 0.00 0.00 0.00 0.39 0.70 0.00 0.00 0.95 1.09 0.00 0.00 0.71 0.99 45 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46 E5a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47 Ix_AR1 ActiveIntronRegion 0 11.78 3.54 15.56 6.67 13.53 3.08 7.58 4.61 2.06 4.20 2.38 1.93 2.35 1.81 4.46 1.67 0.74 0.21 1.19 4.24 0.00 2.42 2.30 48 ER6a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 49 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50 ER7a ExonRegion 0 0.64 0.00 0.54 0.47 0.81 1.11 1.60 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51 E7a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52 E8_Aa NovelBoundary 0 3.41 3.35 5.47 5.66 4.16 2.16 6.67 4.93 2.84 1.18 0.00 0.00 0.00 2.88 0.00 0.00 0.00 1.58 13.65 3.00 2.53 9.00 0.00 53 ER8a ExonRegion 0 0.00 0.00 0.00 0.10 2.48 1.60 0.00 0.00 0.00 0.08 0.00 0.00 0.00 1.24 0.00 0.00 0.00 1.85 0.00 0.00 0.00 3.86 0.00 54 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.03 0.00 0.00 0.00 0.00 0.00 55 ER9a ExonRegion 0 13.56 11.52 10.20 13.54 14.30 21.94 4.23 14.26 15.85 2.59 0.95 0.00 2.76 0.56 1.72 1.46 0.00 4.03 9.26 4.51 1.99 6.52 0.72 56 ER9b ExonRegion 0 0.00 2.71 0.92 0.00 4.24 3.36 0.22 2.59 0.10 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 2.65 3.55 0.00 1.91 0.00