Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC004383.3 Gene 0 21.44 0.74 7.03 4.19 16.63 8.84 5.02 5.94 13.11 3.58 0.12 1.51 0.35 0.57 0.76 0.18 0.30 1.45 0.29 1.87 82.42 20.09 15.14 2 440570 Transcript 0 12.73 0.51 1.36 0.94 2.54 1.32 1.52 0.58 3.59 0.88 0.00 0.86 0.00 1.14 0.00 0.00 0.00 0.00 0.00 1.27 19.20 4.85 5.38 3 414769 Transcript 0 10.64 0.00 0.00 1.94 12.92 2.58 3.25 5.42 9.33 0.27 0.00 0.00 0.00 0.00 2.62 0.00 0.00 0.98 0.00 2.27 45.94 12.56 6.04 4 438673 Transcript 0 1.90 0.00 0.00 0.27 0.27 0.18 0.00 0.17 0.74 0.57 0.00 0.00 0.00 0.00 0.29 0.00 0.00 1.85 0.00 0.21 13.66 8.54 7.64 5 441492 Transcript 0 4.93 0.00 2.25 1.90 1.34 2.00 0.00 3.21 6.95 3.57 0.00 0.00 0.00 0.00 3.68 0.00 0.00 1.58 0.00 2.28 50.74 17.88 19.39 6 457876 Transcript 0 11.76 0.57 5.10 3.00 7.72 6.48 2.95 3.84 5.28 2.54 0.36 0.00 0.00 0.37 0.38 0.00 0.00 0.51 0.00 0.79 70.89 9.89 10.09 7 445415 Transcript 0 26.86 0.10 9.82 0.37 4.71 5.00 0.74 3.35 6.91 2.66 0.00 2.63 0.00 0.81 0.00 0.00 1.45 1.06 0.00 1.90 78.15 11.16 9.23 8 ER1a ExonRegion 0 16.93 0.00 0.00 0.91 0.00 0.00 1.77 1.15 0.82 0.76 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 1.42 19.10 7.64 7.83 9 ER1b ExonRegion 0 39.91 0.00 0.00 1.36 0.76 3.67 3.40 1.73 2.29 1.15 0.00 0.00 0.00 1.62 0.00 0.00 0.00 1.32 0.00 2.13 41.56 9.82 13.84 10 ER1c ExonRegion 0 35.47 0.00 0.00 1.29 3.77 4.98 2.44 3.21 3.88 1.11 0.00 0.00 0.00 0.75 0.12 0.00 0.00 2.16 0.00 1.35 48.95 7.34 13.98 11 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 E1a_E4b KnownJunction 0 2.96 0.00 0.00 0.00 0.00 0.00 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.34 0.00 0.00 13 E1b_E2b KnownJunction 0 5.63 0.00 4.49 3.80 0.00 2.16 0.00 4.68 9.90 7.15 0.00 0.00 0.00 0.00 4.45 0.00 0.00 3.15 0.00 2.43 65.67 23.27 22.62 14 ER1d ExonRegion 0 4.23 0.00 0.00 0.00 2.68 1.83 0.00 1.73 4.01 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 2.13 35.81 12.50 16.15 15 I1 Intron 0 33.46 1.82 5.99 2.42 11.97 19.69 12.64 4.61 8.23 2.55 0.00 0.00 0.00 0.40 1.83 0.00 0.98 1.64 0.00 0.63 109.62 13.67 32.41 16 I1_AR1 ActiveIntronRegion 0 33.85 1.84 6.06 2.45 12.11 19.91 12.79 4.66 8.33 2.58 0.00 0.00 0.00 0.40 1.84 0.00 1.00 1.66 0.00 0.64 110.84 13.83 32.79 17 E2_Aa NovelBoundary 0 22.89 0.00 10.14 3.90 3.65 0.00 0.00 2.51 6.63 2.55 0.00 0.00 0.00 0.00 0.00 0.00 4.77 0.00 0.00 3.13 97.92 0.00 3.50 18 E2_Ab NovelBoundary 0 8.96 0.00 0.00 1.47 0.00 2.16 0.00 2.55 2.40 0.00 0.00 0.00 0.00 0.00 4.45 0.00 0.00 3.40 0.00 2.43 58.07 21.31 20.40 19 ER2a ExonRegion 0 3.81 0.00 0.00 0.55 0.54 0.37 0.00 0.35 1.48 1.15 0.00 0.00 0.00 0.00 0.58 0.00 0.00 3.70 0.00 0.43 27.33 17.08 15.27 20 ER2b ExonRegion 0 14.82 1.56 9.31 6.73 22.37 18.16 7.09 4.55 9.65 4.75 0.00 1.69 0.98 0.68 1.97 0.00 0.84 3.08 0.81 3.15 119.82 22.29 36.43 21 E2_Da NovelBoundary 0 60.31 9.21 13.25 11.25 15.45 13.51 20.31 15.48 17.45 10.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.90 4.33 3.26 143.63 29.94 19.38 22 E2a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 I2 Intron 0 27.37 0.49 5.68 3.40 8.33 5.71 2.54 5.55 8.81 6.14 0.00 1.59 0.92 0.96 0.98 0.00 0.79 1.32 0.00 3.06 125.51 14.97 17.58 24 I2_AR1 ActiveIntronRegion 0 27.62 0.49 5.74 3.44 8.41 5.76 2.56 5.60 8.89 6.19 0.00 1.60 0.93 0.97 0.99 0.00 0.80 1.33 0.00 3.09 126.66 15.10 17.75 25 E3_Aa NovelBoundary 0 65.20 0.00 4.38 5.59 16.89 18.23 8.48 4.23 4.69 8.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.95 0.00 2.68 147.09 19.23 16.05 26 ER3a ExonRegion 0 20.18 1.14 10.20 3.94 15.44 12.95 5.91 7.67 9.15 5.09 0.72 0.00 0.00 0.75 0.76 0.00 0.00 1.03 0.00 1.58 141.78 19.78 20.17 27 E3_Da NovelBoundary 0 25.12 0.00 8.96 16.88 12.48 7.67 12.90 8.21 17.68 10.72 0.00 0.00 0.00 2.12 0.00 0.00 0.00 4.97 0.00 3.00 221.60 23.27 39.61 28 E3a_E4b KnownJunction 0 3.33 0.00 0.00 2.06 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 I3 Intron 0 15.80 0.72 5.68 1.44 4.75 12.22 4.94 3.66 6.87 5.31 0.34 0.95 0.00 0.58 1.24 0.53 0.00 2.77 0.00 0.76 108.25 17.03 19.31 30 I3_AR1 ActiveIntronRegion 0 23.21 1.67 7.51 1.11 9.54 11.68 6.19 5.65 9.10 5.43 1.06 2.00 0.00 0.00 2.48 0.00 0.00 2.26 0.00 0.58 142.01 18.35 24.17 31 I3_SR1 SilentIntronRegion 0 8.21 0.00 3.35 1.89 1.66 14.75 3.58 1.60 5.33 7.25 0.00 1.06 0.00 1.60 0.90 0.92 0.00 3.66 0.00 0.38 105.99 18.04 19.52 32 I3_AR2 ActiveIntronRegion 0 2.12 0.00 4.90 2.73 0.00 6.81 2.65 0.00 6.18 1.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.96 0.00 2.13 60.44 15.48 15.94 33 I3_AR3 ActiveIntronRegion 0 6.94 0.00 4.90 1.06 0.00 10.19 1.03 1.44 5.49 6.24 0.00 0.00 0.00 0.09 0.00 0.00 0.00 3.70 0.00 1.77 78.11 15.28 12.56 34 I3_AR4 ActiveIntronRegion 0 8.47 0.00 2.86 0.00 0.00 11.53 4.22 1.73 4.82 8.41 0.00 0.00 0.00 1.62 0.00 0.00 0.00 2.55 0.00 2.13 90.98 21.33 21.95 35 I3_AR5 ActiveIntronRegion 0 20.02 0.69 6.54 1.38 4.55 12.04 6.04 4.82 6.68 2.93 0.00 0.00 0.00 0.19 0.70 1.01 0.00 2.01 0.00 0.91 85.22 14.36 14.68 36 E4_Aa NovelBoundary 0 61.49 0.00 17.33 9.09 8.06 7.55 6.18 14.33 12.50 12.22 0.00 0.00 0.00 2.47 0.00 0.00 0.00 4.19 0.00 2.88 120.96 19.90 10.50 37 ER4a ExonRegion 0 26.86 0.10 9.82 0.37 4.71 5.00 0.74 3.35 6.91 2.66 0.00 2.63 0.00 0.81 0.00 0.00 1.45 1.06 0.00 1.90 78.15 11.16 9.23 38 E4_Ab KnownBoundary 0 44.82 0.00 16.00 1.70 12.14 2.73 4.50 13.18 9.11 4.75 0.00 0.00 0.00 0.00 0.00 0.00 4.30 2.49 0.00 3.26 91.80 16.17 7.94 39 ER4b ExonRegion 0 24.12 1.15 12.02 5.78 16.83 8.17 4.08 19.26 13.23 8.17 0.00 0.00 0.00 0.55 3.11 0.29 0.56 2.00 0.00 1.69 155.22 23.92 17.58 40 E4_Da KnownBoundary 0 7.26 0.00 12.24 5.66 7.89 13.12 2.03 11.71 9.23 10.85 0.00 0.00 0.00 2.47 0.00 3.33 0.00 2.07 0.00 0.00 132.82 8.39 20.23 41 E4a_E5a KnownJunction 0 7.48 0.00 0.00 1.96 11.29 0.00 2.25 4.15 9.98 0.00 0.00 0.00 0.00 0.00 4.45 0.00 0.00 0.00 0.00 2.88 40.71 8.57 0.00 42 E4a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39.23 6.18 0.00 43 ER4c ExonRegion 0 12.17 0.00 9.59 3.37 6.13 6.99 1.37 5.28 8.83 3.87 0.00 0.00 0.69 0.08 0.79 0.98 0.59 1.75 0.00 1.14 76.91 15.52 9.04 44 E4_Dc NovelBoundary 0 7.11 3.29 1.48 0.00 0.00 0.00 0.00 2.42 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.08 0.00 45 ER4d ExonRegion 0 2.82 0.00 2.45 0.45 0.00 0.00 0.00 1.73 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.69 0.00 46 I4 Intron 0 13.89 0.51 1.15 0.51 5.74 6.48 1.84 3.25 5.11 0.22 0.00 3.15 0.49 0.34 0.73 0.00 0.00 0.00 0.00 1.88 7.78 2.10 1.85 47 I4_AR1 ActiveIntronRegion 0 14.52 0.54 1.22 0.54 6.00 6.86 1.94 3.34 5.32 0.23 0.00 3.33 0.52 0.36 0.71 0.00 0.00 0.00 0.00 1.88 7.99 2.03 1.96 48 E5_Aa NovelBoundary 0 10.59 0.00 1.45 0.00 4.07 13.69 2.21 7.43 4.57 2.31 0.00 0.00 0.00 0.00 4.45 0.00 0.00 0.00 0.00 0.00 19.71 3.12 0.00 49 ER5a ExonRegion 0 13.80 0.00 0.00 1.92 14.54 5.16 4.24 6.69 8.68 0.55 0.00 0.00 0.00 0.00 0.80 0.00 0.00 1.95 0.00 1.67 51.16 16.55 12.09 50 E5_Ab KnownBoundary 0 24.67 0.00 0.00 1.33 25.98 6.98 0.00 6.86 4.80 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.53 0.00 5.82 30.70 19.35 7.26 51 ER5b ExonRegion 0 21.05 0.22 3.34 6.07 29.19 7.60 11.63 9.66 21.06 2.82 0.00 3.56 1.20 0.51 0.64 0.00 0.00 1.44 0.00 2.44 44.22 38.65 14.06 52 E5_Da KnownBoundary 0 27.34 3.22 5.53 13.05 51.36 0.00 9.63 2.01 18.08 4.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 19.21 32.27 0.00 53 ER5c ExonRegion 0 35.91 1.15 5.47 5.58 28.14 7.18 6.40 3.96 25.85 2.97 0.00 3.73 0.00 0.65 0.00 0.00 0.00 0.72 1.00 2.15 54.05 25.05 9.68 54 E5_Db KnownBoundary 0 6.96 5.85 1.12 0.00 12.99 0.00 0.00 0.00 15.48 1.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.45 5.08 8.02 55 ER5d ExonRegion 0 8.53 1.02 2.72 0.98 5.07 2.65 1.27 0.00 6.36 1.00 0.00 1.72 0.00 1.20 0.00 0.00 0.00 0.00 0.00 1.12 19.29 2.06 2.94