Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP1-177G6.1 Gene 0 34.92 160.02 162.40 212.28 1.65 0.68 2.68 123.29 3.23 38.88 0.81 2.54 1.93 1.66 3.29 1.47 2.04 177.83 163.71 182.50 1.80 4.94 8.63 2 370535 Transcript 0 28.40 139.49 101.66 137.91 0.87 0.57 1.41 89.62 2.08 30.73 0.43 1.19 1.02 0.87 1.73 0.77 1.07 174.66 118.57 120.67 0.55 0.95 4.00 3 498732 Transcript 0 5.28 30.39 55.11 74.41 0.00 0.12 0.00 31.94 0.66 17.50 0.00 0.24 0.00 0.00 0.00 0.00 0.00 41.53 38.09 56.67 0.67 3.25 2.07 4 ER1a ExonRegion 0 25.70 191.16 33.17 37.09 0.00 0.92 0.00 15.80 0.18 9.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 91.20 49.83 81.15 0.00 0.00 2.94 5 E1a_E2a KnownJunction 0 194.85 1072.51 103.49 155.13 0.00 2.78 0.00 82.27 1.68 42.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 299.00 638.14 478.23 0.00 5.63 40.38 6 ER1b ExonRegion 0 92.87 541.18 87.79 103.80 0.00 1.83 0.00 65.47 2.17 36.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 276.72 318.28 260.34 0.00 2.50 17.03 7 ER2a ExonRegion 0 98.54 497.15 111.88 141.70 0.00 0.97 0.00 100.92 2.47 51.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 346.09 450.64 269.74 0.00 4.05 15.99 8 E2a_E3a KnownJunction 0 12.45 22.36 53.46 102.98 0.00 0.00 0.00 81.66 1.50 32.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 188.78 93.18 46.40 0.00 0.00 0.00 9 E2a_E4a KnownJunction 0 0.00 5.20 14.34 3.86 0.00 0.00 0.00 2.38 0.00 4.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.62 7.53 2.94 0.00 0.00 0.00 10 I2 Intron 0 4.20 37.11 17.52 21.08 0.20 0.48 0.00 15.15 0.62 3.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.26 19.69 25.75 0.00 0.08 0.66 11 I2_SR1 SilentIntronRegion 0 3.81 43.94 18.22 28.31 0.56 0.58 0.00 20.45 0.39 5.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.48 25.67 31.01 0.00 0.00 1.84 12 I2_AR2 ActiveIntronRegion 0 7.96 37.27 23.49 18.97 0.00 0.51 0.00 13.84 0.77 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.51 23.02 27.56 0.00 0.00 0.00 13 E3_Aa NovelBoundary 0 10.89 94.85 103.28 116.14 0.00 0.00 0.00 55.66 1.79 29.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 102.35 110.59 118.57 0.00 0.00 7.51 14 ER3a ExonRegion 0 47.05 204.95 218.36 273.64 2.61 0.79 4.24 171.39 4.56 49.90 1.28 3.57 3.05 2.62 5.20 2.32 3.22 244.01 212.69 234.46 1.64 2.85 9.06 15 E3_Da NovelBoundary 0 29.41 78.14 11.38 18.85 0.00 0.00 0.00 15.24 0.00 6.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.48 30.49 17.64 0.00 0.00 0.00 16 I3 Intron 0 21.16 122.07 103.59 164.65 0.16 0.54 0.04 72.73 1.67 18.26 0.02 0.00 0.02 0.00 0.00 0.00 0.00 73.90 71.27 105.20 0.00 0.62 2.72 17 I3_AR1 ActiveIntronRegion 0 48.40 238.57 86.61 132.63 0.00 0.87 0.00 45.71 1.04 11.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35.69 141.25 78.44 0.00 0.00 4.64 18 I3_AR2 ActiveIntronRegion 0 25.45 193.16 319.42 496.05 0.00 2.82 0.00 214.84 3.05 63.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 136.82 228.23 230.90 0.00 0.79 1.60 19 I3_AR3 ActiveIntronRegion 0 136.10 515.69 300.63 379.53 0.00 1.99 0.33 195.15 3.71 60.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 187.66 185.98 235.44 0.00 1.23 2.97 20 I3_AR4 ActiveIntronRegion 0 87.22 230.01 172.55 193.24 0.00 0.00 0.00 96.25 4.65 19.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 148.55 201.43 144.40 0.00 1.64 7.81 21 I3_SR2 SilentIntronRegion 0 41.57 306.16 345.00 508.59 0.66 3.40 0.33 185.23 4.29 57.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 189.33 206.71 291.22 0.00 1.57 8.36 22 I3_AR5 ActiveIntronRegion 0 36.21 176.93 252.09 377.65 0.00 0.60 0.00 152.75 1.30 39.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 141.43 137.17 249.88 0.00 2.64 3.82 23 I3_SR3 SilentIntronRegion 0 13.68 80.08 78.82 128.80 0.21 0.57 0.00 52.93 1.89 14.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 68.45 70.40 87.63 0.00 0.64 2.50 24 I3_AR6 ActiveIntronRegion 0 22.61 174.14 119.93 204.48 0.00 0.28 0.00 116.76 4.55 27.72 0.05 0.00 0.00 0.00 0.00 0.00 0.00 69.56 94.23 140.20 0.00 0.63 1.34 25 I3_SR4 SilentIntronRegion 0 26.41 126.24 112.04 187.01 0.00 0.00 0.00 93.57 0.78 31.72 0.80 0.00 0.00 0.00 0.00 0.00 0.00 69.58 59.13 117.65 0.00 1.79 1.26 26 I3_AR7 ActiveIntronRegion 0 15.11 120.66 129.37 217.12 0.00 0.00 0.00 103.87 2.06 22.03 0.40 0.00 0.00 0.00 0.00 0.00 0.00 119.84 98.82 140.00 0.00 0.48 4.55 27 I3_AR8 ActiveIntronRegion 0 19.77 212.37 122.43 184.98 0.00 0.00 0.00 95.06 3.34 25.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 176.21 119.31 150.48 0.00 1.94 11.68 28 I3_AR9 ActiveIntronRegion 0 12.56 176.79 99.10 178.45 0.00 6.15 0.00 93.78 2.39 30.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 174.34 167.59 140.36 0.00 0.60 12.98 29 I3_AR10 ActiveIntronRegion 0 10.23 159.30 104.56 184.67 0.00 7.34 0.00 115.23 1.24 32.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 172.15 133.79 144.68 0.00 0.00 7.34 30 I3_AR11 ActiveIntronRegion 0 22.32 178.22 119.53 190.06 0.00 7.34 0.00 124.29 1.24 38.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 171.67 167.09 175.43 0.00 0.00 6.67 31 I3_AR12 ActiveIntronRegion 0 28.40 151.50 76.95 116.66 0.00 0.44 0.00 76.09 0.64 25.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 109.42 125.18 167.32 0.00 0.00 10.75 32 I3_SR5 SilentIntronRegion 0 13.15 108.38 88.17 126.98 0.00 0.00 0.00 56.00 0.68 14.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 81.68 52.70 93.00 0.00 0.00 3.45 33 I3_AR13 ActiveIntronRegion 0 49.16 167.31 115.12 176.80 0.42 0.00 0.10 95.22 2.87 22.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70.70 66.66 96.50 0.00 1.30 3.21 34 I3_SR6 SilentIntronRegion 0 14.72 97.33 77.40 129.24 0.13 0.32 0.02 56.24 1.08 12.55 0.00 0.00 0.03 0.00 0.00 0.00 0.00 57.51 49.92 84.33 0.00 0.41 2.11 35 E4_Aa NovelBoundary 0 0.00 20.13 39.21 68.39 0.00 0.00 0.00 18.77 0.00 2.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.16 12.99 59.00 0.00 0.00 0.00 36 ER4a ExonRegion 0 7.98 44.41 60.65 75.05 0.00 0.00 0.00 33.18 0.00 13.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56.13 54.63 81.76 0.05 0.19 0.00 37 E4_Da NovelBoundary 0 0.00 18.02 31.96 81.44 0.00 0.00 0.00 20.09 0.00 4.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43.19 35.58 42.76 0.00 0.00 0.00 38 E4a_E5a KnownJunction 0 6.89 30.39 81.46 107.78 0.00 0.00 0.00 54.71 1.68 33.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61.85 38.87 64.62 0.00 2.33 0.00 39 ER5a ExonRegion 0 6.26 41.57 64.00 110.93 0.00 0.47 0.00 37.48 0.94 18.49 0.00 0.98 0.00 0.00 0.00 0.00 0.00 38.53 51.34 77.38 2.63 10.47 8.28 40 IG28 Intergenic 0 2.63 35.92 21.80 68.71 0.00 0.12 0.14 22.24 0.73 8.33 0.00 3.96 0.00 0.00 0.09 0.00 0.00 14.01 18.07 48.89 1.94 4.68 5.06 41 IG28_SR1 SilentIntergenicRegion 0 2.74 34.16 22.10 70.56 0.00 0.18 0.22 21.39 0.84 8.24 0.00 3.89 0.00 0.00 0.00 0.00 0.00 13.72 16.80 49.20 1.88 4.30 5.10 42 IG28_AR1 ActiveIntergenicRegion 0 1.62 35.70 20.69 70.55 0.00 0.00 0.00 24.71 0.69 8.82 0.00 4.32 0.00 0.00 0.30 0.00 0.00 14.35 20.10 50.27 2.27 5.57 5.21 43 IG28_SR2 SilentIntergenicRegion 0 5.41 52.24 23.46 46.14 0.00 0.00 0.00 20.47 0.00 7.37 0.00 3.23 0.00 0.00 0.03 0.00 0.00 15.40 21.61 41.41 1.24 4.74 4.14