Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NCRNA00087 Gene 0 0.18 0.44 3.08 6.67 2.89 6.89 2.06 12.46 14.30 11.51 0.00 0.00 0.00 0.00 0.00 0.00 0.29 1.51 0.00 1.65 5.04 3.69 4.06 2 357160 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 433425 Transcript 0 0.10 0.67 2.21 7.36 1.47 9.69 1.20 10.17 15.10 11.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.94 4.32 2.38 4.40 4 455568 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 437661 Transcript 0 0.00 0.18 2.75 2.51 2.21 3.70 1.25 6.32 5.49 5.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 1.05 2.48 2.34 1.31 6 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 ER1b ExonRegion 0 0.00 0.00 0.00 0.46 0.60 0.41 0.00 1.16 2.04 4.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.86 0.00 0.00 2.48 0.47 1.32 8 E1_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.93 5.01 5.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.70 0.00 0.00 3.15 0.00 4.18 9 ER1c ExonRegion 0 0.00 0.00 0.00 0.91 0.00 4.00 0.03 0.00 6.65 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 10 E1_Ac KnownBoundary 0 0.00 0.00 3.40 1.86 0.00 7.89 0.00 6.94 13.11 3.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.12 0.00 0.00 11 ER1d ExonRegion 0 0.33 0.00 2.12 6.29 3.03 7.91 2.81 11.16 16.84 11.60 0.00 0.00 0.00 0.00 0.00 0.00 1.04 2.16 0.00 2.64 8.81 4.68 4.76 12 E1b_E2a KnownJunction 0 0.00 0.00 4.46 20.84 11.12 2.44 3.62 24.44 28.27 20.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.46 14.70 6.25 11.44 13 ER2a ExonRegion 0 1.38 0.00 1.31 9.60 2.49 3.75 5.23 16.76 25.71 16.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.77 4.15 5.72 7.10 14 E2_Da KnownBoundary 0 3.78 3.09 41.96 29.30 4.16 37.82 0.00 29.08 53.88 38.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.67 8.38 11.12 2.78 8.21 8.11 15 E2a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 ER2b ExonRegion 0 0.21 1.34 4.42 13.81 2.94 15.37 2.36 20.34 23.55 18.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 1.87 5.20 4.76 8.80 17 E2_Db NovelBoundary 0 0.00 12.89 76.90 55.70 12.22 110.50 23.27 57.96 107.70 49.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29.97 48.66 8.63 14.02 20.21 41.40 18 I2 Intron 0 1.47 2.66 5.59 12.93 3.82 12.57 4.59 17.34 24.63 16.60 0.00 0.00 0.00 0.00 0.00 0.12 0.00 3.11 1.04 2.43 6.11 5.44 12.22 19 I2_AR1 ActiveIntronRegion 0 1.47 2.66 5.59 12.95 3.83 12.59 4.60 17.37 24.67 16.62 0.00 0.00 0.00 0.00 0.00 0.12 0.00 3.12 1.04 2.43 6.12 5.45 12.24 20 E3_Aa NovelBoundary 0 3.78 2.43 9.96 31.63 0.00 7.84 1.85 43.87 30.70 26.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.54 4.14 0.00 8.59 5.45 20.57 21 ER3a ExonRegion 0 0.00 0.00 0.02 0.08 0.00 8.63 2.08 0.11 0.48 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.34 1.73 1.70 2.30 22 E3_Da NovelBoundary 0 3.78 6.51 17.62 16.71 15.28 32.08 4.46 32.12 52.05 26.67 0.00 0.00 0.00 2.30 0.00 0.00 0.00 8.29 0.00 6.14 0.00 2.27 18.35 23 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 I3 Intron 0 1.57 1.51 6.76 7.91 3.97 10.20 0.98 17.20 18.77 18.07 0.00 0.00 0.00 0.25 0.00 0.55 0.00 3.24 1.77 1.58 2.86 4.25 10.35 25 I3_AR1 ActiveIntronRegion 0 1.58 1.52 6.81 7.97 4.00 10.28 0.99 17.32 18.91 18.19 0.00 0.00 0.00 0.25 0.00 0.56 0.00 3.26 1.79 1.59 2.88 4.28 10.42 26 E4_Aa NovelBoundary 0 3.33 0.00 24.78 28.04 0.00 2.67 1.68 23.25 25.78 23.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.30 0.00 0.00 2.29 3.06 7.94 27 E4_Ab NovelBoundary 0 0.00 0.00 22.32 17.25 0.00 5.68 1.72 20.09 23.50 19.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.48 0.00 0.00 5.31 5.02 8.62 28 ER4a ExonRegion 0 0.00 0.00 3.01 2.73 1.46 3.17 1.08 8.80 7.19 6.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.01 4.36 2.94 29 ER4b ExonRegion 0 0.00 1.15 7.98 11.01 5.35 6.03 3.59 31.56 21.63 17.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.34 0.00 2.15 4.32 7.86 4.13 30 E4_Da KnownBoundary 0 3.63 18.81 59.90 32.43 16.81 83.87 12.98 54.22 76.85 39.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.40 21.55 0.00 24.46 8.02 4.35 31 ER4c ExonRegion 0 0.00 0.71 7.98 7.24 7.40 3.01 1.82 16.37 14.31 13.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.85 3.17 3.32 0.00