Order	SeqName	SeqType	IsAE	NBL01_MYCN	NBL05_MYCN	NBL09_MYCN	NBL10_MYCN	NBL02	NBL03	NBL04	NBL06	NBL07	NBL08	NBL11_Rel2	NBL11_Rem1	NBL11_Rel1	NBL12_Rel_Left	NBL12_Rel_Right	NBL13_Rel_Left	NBL13_Rel_Right	NBL14_MYCN_Met	NBL14_MYCN_Pri	NBL15_MYCN_Rel1	SKP01	SKP02	SKP03
1	ZNF75D	Gene	0	38.07	24.96	29.01	31.18	30.48	29.88	22.58	17.22	23.42	19.23	34.71	24.82	22.21	24.49	18.44	24.83	17.70	20.90	13.34	20.18	24.65	35.00	25.70
2	370766	Transcript	1	30.05	36.08	34.56	51.15	40.86	55.34	48.00	23.28	34.86	31.44	40.94	15.07	12.29	37.09	10.70	39.18	10.20	36.34	24.05	30.04	33.33	30.27	31.22
3	494295	Transcript	0	0.48	0.00	0.00	0.00	0.18	0.14	0.17	0.00	0.17	0.15	0.09	0.28	0.01	0.00	0.11	0.33	0.09	0.28	0.00	0.00	1.21	0.87	0.35
4	439821	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5	370764	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
6	469456	Transcript	0	4.89	9.50	5.63	7.08	4.88	9.20	5.96	1.91	6.28	3.29	6.07	2.95	1.95	4.76	1.60	2.86	4.81	6.61	2.72	6.76	6.64	8.53	7.27
7	ER1a	ExonRegion	0	2.08	3.89	1.64	3.48	0.00	7.04	0.40	0.93	0.71	1.72	4.83	0.93	0.00	6.96	0.83	3.93	0.00	1.39	2.39	3.15	8.19	2.46	9.44
8	E1_Ab	KnownBoundary	0	0.00	12.50	5.00	8.62	0.00	5.74	1.77	2.46	5.61	6.88	12.32	18.16	0.00	4.71	4.45	7.86	0.00	11.28	3.86	10.99	8.28	5.39	4.27
9	ER1b	ExonRegion	0	4.03	5.73	5.09	5.25	3.99	6.84	6.94	2.82	9.08	7.23	29.59	4.87	4.08	24.89	10.74	21.29	17.19	21.72	7.89	10.72	35.66	20.16	25.55
10	E1_Da	KnownBoundary	0	10.59	11.91	6.06	12.99	7.13	2.84	22.17	5.09	11.89	12.28	29.01	0.00	0.00	22.01	5.19	21.28	17.67	23.59	35.01	19.81	26.44	28.72	28.60
11	E1a_E2a	NovelJunction	0	0.00	0.00	4.38	7.03	0.00	0.00	3.44	0.00	0.00	1.45	9.48	12.30	0.00	11.18	0.00	8.72	3.55	0.00	0.00	0.00	8.71	2.39	4.35
12	E1a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	ER1c	ExonRegion	0	9.90	12.92	11.79	13.92	10.44	12.94	13.66	7.70	15.20	9.90	25.62	20.30	22.06	20.55	8.53	24.16	21.80	18.84	12.13	15.15	23.25	25.88	21.61
14	E1_Db	NovelBoundary	0	0.00	0.00	0.00	3.63	0.00	0.00	1.90	5.83	0.00	1.18	2.47	0.00	0.00	5.42	8.90	7.52	17.86	0.00	0.00	3.26	5.50	0.00	0.00
15	E1b_E2a	KnownJunction	0	2.89	3.16	4.61	2.73	12.48	20.50	7.33	9.41	9.69	3.44	14.48	25.21	0.00	26.90	0.00	18.46	0.00	5.39	8.38	14.51	30.33	14.45	25.61
16	E1b_E6a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	2.90	0.00	0.00	1.24	0.00	9.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.97	3.12	0.00
17	I1_AR4	ActiveIntronRegion	0	18.81	6.85	15.09	23.77	8.40	2.99	8.13	5.37	3.22	2.28	5.79	16.15	23.71	5.59	5.11	6.85	8.08	3.22	1.64	5.70	2.77	1.60	3.03
18	I1_AR5	ActiveIntronRegion	0	3.32	2.75	2.61	5.06	0.43	0.46	2.72	0.98	1.62	1.02	4.03	7.07	7.19	6.01	1.28	3.68	6.19	3.16	1.18	1.52	8.79	2.30	6.03
19	I1_AR6	ActiveIntronRegion	0	3.18	1.22	0.00	0.92	2.49	0.55	0.60	0.23	0.37	0.77	5.11	14.41	10.11	2.14	1.05	1.34	0.99	0.00	0.00	0.00	1.18	2.90	2.04
20	E2_Ab	NovelBoundary	0	5.93	2.63	3.40	2.50	3.06	2.27	5.21	6.53	2.89	0.00	24.16	17.71	0.00	13.48	0.00	6.92	0.00	8.08	3.76	4.60	15.07	8.02	2.99
21	ER2a	ExonRegion	1	6.95	4.07	8.58	7.20	6.88	17.55	12.10	6.91	9.53	7.21	18.22	37.11	0.00	25.52	3.32	20.80	6.13	7.39	6.37	10.64	29.59	12.20	17.62
22	ER2b	ExonRegion	1	6.68	14.39	12.48	13.70	8.54	28.75	11.76	9.59	14.70	14.19	32.25	22.30	15.70	36.29	7.99	26.04	18.41	24.46	16.11	20.51	37.54	15.69	26.01
23	E2_Da	NovelBoundary	0	3.26	2.96	1.83	4.93	0.00	2.16	4.11	2.55	2.52	6.07	4.53	0.00	6.82	9.71	0.00	7.86	8.51	17.91	8.94	5.94	19.65	13.84	21.08
24	E2a_E3a	KnownJunction	0	10.74	12.63	8.57	59.37	7.22	36.97	16.91	18.69	21.87	11.52	16.74	0.00	20.13	26.61	8.90	15.81	8.13	47.80	12.05	27.10	33.73	8.08	20.40
25	I2	Intron	0	5.91	4.78	3.85	6.71	6.10	3.93	5.41	2.98	6.58	5.47	11.45	10.00	11.46	7.61	3.14	6.17	5.06	2.91	2.93	6.45	10.20	14.33	9.70
26	I2_SR1	SilentIntronRegion	0	6.34	3.92	4.75	5.51	3.54	4.15	4.92	2.85	6.60	4.67	11.31	6.48	10.59	7.83	3.00	6.85	5.53	3.65	3.36	6.43	12.34	12.09	10.26
27	I2_AR1	ActiveIntronRegion	0	2.42	3.58	3.35	15.60	9.29	2.52	6.74	3.46	6.51	7.74	12.14	17.11	11.44	7.96	0.00	9.80	3.25	2.34	3.64	7.66	7.30	16.88	10.52
28	I2_AR2	ActiveIntronRegion	0	5.93	5.17	2.65	7.88	8.89	4.35	5.47	3.96	6.47	6.77	11.10	14.82	10.24	5.89	3.56	4.15	6.44	2.30	1.93	5.77	7.52	18.52	7.38
29	I2_SR2	SilentIntronRegion	0	6.19	9.41	1.54	4.90	12.63	3.26	6.93	1.92	6.77	6.00	12.33	15.70	17.76	8.93	5.39	3.33	1.89	0.52	1.79	6.80	5.57	17.64	9.83
30	E3_Aa	NovelBoundary	0	0.00	14.08	6.24	7.79	11.97	5.45	11.53	4.23	10.39	4.32	10.00	6.00	33.76	9.54	0.00	6.92	7.95	6.14	4.80	8.05	2.35	2.88	21.43
31	ER3a	ExonRegion	1	20.37	35.90	24.67	34.74	30.35	45.51	21.12	14.78	30.39	26.06	42.03	24.82	27.65	45.96	11.46	33.13	21.47	39.10	14.33	29.63	50.74	21.70	34.54
32	E3_Da	NovelBoundary	0	6.89	6.25	0.00	3.70	20.63	10.79	15.24	7.35	6.94	2.44	12.48	18.61	0.00	7.24	0.00	20.59	0.00	8.37	0.00	3.13	11.55	6.06	11.18
33	E3a_E4a	KnownJunction	0	20.52	40.06	50.12	73.52	12.22	58.66	70.13	21.19	42.79	30.84	39.69	12.00	6.17	47.38	14.96	35.89	12.44	45.81	22.68	43.08	32.99	19.66	22.11
34	E3a_E5c	KnownJunction	0	0.00	3.35	0.00	0.00	0.00	2.16	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	I3	Intron	0	8.19	8.66	3.65	5.21	10.59	6.06	5.47	3.25	4.08	2.60	8.91	8.39	6.80	8.38	3.00	5.56	4.02	4.51	3.46	6.66	11.01	11.23	12.26
36	I3_AR1	ActiveIntronRegion	0	8.20	8.68	3.66	5.22	10.60	6.07	5.48	3.25	4.09	2.61	8.92	8.41	6.81	8.39	3.00	5.57	4.02	4.52	3.47	6.67	11.03	11.25	12.28
37	E4_Aa	NovelBoundary	0	11.11	2.57	6.09	6.69	3.99	2.61	4.24	1.97	6.51	4.38	9.53	5.70	12.34	2.41	5.32	15.12	4.77	11.07	4.61	5.75	28.11	3.06	11.87
38	ER4a	ExonRegion	0	18.56	37.50	31.08	29.55	36.52	53.78	27.88	18.05	31.95	34.73	47.40	18.26	15.89	36.24	13.75	36.67	15.19	39.10	21.55	34.70	49.06	38.00	36.27
39	E4_Da	NovelBoundary	0	0.00	3.35	5.38	2.93	17.32	2.21	3.97	0.00	4.20	7.60	2.05	0.00	0.00	4.94	0.00	19.82	11.97	3.81	4.80	12.21	16.19	0.00	7.68
40	E4a_E5b	KnownJunction	0	35.27	47.62	29.12	57.34	54.50	66.10	75.56	27.72	30.84	35.94	39.17	11.85	6.66	34.79	14.09	25.46	0.00	41.62	43.48	22.50	29.10	23.45	35.60
41	I4	Intron	0	4.46	8.12	3.85	8.72	7.86	6.49	7.08	4.86	9.57	6.57	8.01	5.14	6.65	4.53	1.98	8.96	3.23	3.81	1.68	6.25	5.81	7.38	5.09
42	I4_SR1	SilentIntronRegion	0	0.00	6.79	0.00	2.95	4.22	10.83	3.00	2.23	1.82	4.69	9.74	6.07	4.06	2.78	3.23	6.34	3.30	5.58	0.99	4.78	7.54	7.63	5.60
43	I4_AR1	ActiveIntronRegion	0	5.23	8.37	4.51	9.72	8.50	5.79	7.79	5.31	10.90	6.90	7.74	5.00	7.11	4.84	1.78	9.43	3.23	3.52	1.80	6.52	5.54	7.37	5.02
44	E5_Aa	NovelBoundary	0	19.78	12.10	7.42	25.27	31.24	17.26	22.48	4.60	17.33	8.00	20.22	11.70	0.00	8.77	4.45	23.93	9.54	4.19	3.67	9.14	8.71	34.23	18.95
45	ER5a	ExonRegion	0	4.08	8.23	5.05	5.48	4.96	8.72	5.75	1.14	6.24	3.78	5.75	2.53	0.11	7.96	1.77	0.58	7.08	2.25	3.96	4.15	6.45	9.30	7.38
46	E5_Ab	KnownBoundary	0	10.89	14.87	8.49	13.38	8.49	19.31	14.31	6.57	21.87	11.98	9.90	6.00	5.68	14.24	4.45	3.50	16.92	4.68	9.13	14.00	11.86	17.33	16.13
47	ER5b	ExonRegion	0	45.14	37.59	39.12	55.41	48.31	47.22	33.96	22.53	45.96	33.76	46.22	15.65	15.87	30.32	20.18	32.04	18.50	31.70	17.61	33.48	30.13	51.42	34.85
48	E5_Da	KnownBoundary	0	7.33	9.21	10.32	21.44	4.07	7.15	10.25	4.72	4.48	1.21	4.63	0.00	0.00	4.71	4.45	0.00	0.00	15.09	0.00	8.25	5.31	10.84	8.37
49	E5a_E5c	KnownJunction	1	45.86	19.14	27.91	44.18	60.19	42.82	18.42	26.16	33.85	24.23	37.48	18.16	20.45	29.96	0.00	58.70	13.18	18.82	8.47	19.88	22.18	39.99	30.90
50	ER5c	ExonRegion	0	5.70	10.77	6.22	8.67	4.80	9.67	6.18	2.69	6.33	2.81	6.40	3.37	3.79	1.56	1.44	5.14	2.54	10.96	1.47	9.38	6.83	7.77	7.17
51	E5_Ac	KnownBoundary	0	3.56	8.81	10.59	10.52	7.98	5.28	5.74	3.57	14.47	6.31	7.37	5.70	0.00	0.00	0.00	0.00	0.00	4.02	0.00	12.46	5.87	5.82	6.83
52	ER5d	ExonRegion	0	38.94	39.30	38.44	47.43	62.31	46.09	46.48	26.82	35.26	36.03	41.30	31.27	16.86	27.33	18.10	28.54	12.57	17.77	21.99	32.86	14.57	49.29	31.30
53	E5b_E6a	KnownJunction	0	83.05	62.03	44.06	93.46	96.26	60.48	154.83	16.14	44.24	31.51	47.64	35.71	54.22	26.96	27.69	36.32	26.37	31.59	22.87	64.88	9.08	83.40	49.00
54	ER6a	ExonRegion	0	98.47	55.20	60.63	69.91	83.40	74.09	50.95	45.57	52.57	42.86	68.26	63.60	57.79	39.63	36.75	40.46	24.27	23.88	25.86	37.87	23.19	82.90	43.80
55	E6_Da	KnownBoundary	0	798.51	174.71	146.12	176.60	256.88	237.76	170.95	92.66	85.56	84.19	145.46	119.44	125.64	60.75	52.41	106.55	47.59	39.38	51.20	57.65	35.65	314.43	88.86
56	ER6b	ExonRegion	0	108.78	46.38	77.59	71.74	63.08	46.82	43.71	36.18	38.16	32.94	52.66	40.13	30.14	27.81	49.09	33.98	25.43	27.81	18.90	28.95	24.92	60.13	34.47
57	ER6c	ExonRegion	0	0.53	1.53	0.00	3.41	2.01	0.00	0.00	0.00	0.62	0.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
58	ER7a	ExonRegion	0	0.33	0.00	0.00	0.00	0.00	0.87	0.63	0.00	0.29	0.00	0.00	1.69	0.07	0.00	0.65	0.00	0.52	1.30	0.00	0.00	2.48	0.33	0.93
59	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
60	ER8a	ExonRegion	0	1.35	0.00	0.00	0.00	0.00	0.00	0.11	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.63	0.00	0.00	0.00	0.00	1.54	0.73	0.00
61	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
62	ER9a	ExonRegion	0	1.18	0.00	0.00	0.00	1.07	0.00	0.31	0.00	0.74	0.91	0.52	0.00	0.00	0.00	0.00	1.35	0.00	0.37	0.00	0.00	3.24	4.17	1.18