Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ENOX2 Gene 0 23.47 31.32 26.01 41.24 29.48 22.28 21.20 16.68 33.14 46.51 39.02 46.03 52.72 66.94 33.76 48.63 41.84 36.94 24.78 22.17 27.42 54.06 40.58 2 350369 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 338144 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 394363 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 370935 Transcript 0 2.12 2.69 0.00 4.91 2.08 0.00 0.00 0.00 1.78 1.63 1.03 9.23 0.00 14.64 0.00 7.30 6.50 5.68 2.31 4.73 3.81 9.09 0.00 6 432489 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 492263 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 370927 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 ER1a ExonRegion 0 7.44 0.52 2.53 1.23 15.54 2.31 5.30 1.73 1.27 2.22 5.74 0.00 0.76 11.42 2.71 14.96 11.61 7.69 7.50 5.35 1.78 1.01 14.49 10 E1_Ac KnownBoundary 0 50.23 8.29 5.20 7.06 55.77 17.72 35.20 6.74 8.33 10.88 17.27 5.55 13.96 47.85 21.14 84.51 48.06 46.80 26.26 28.00 17.36 19.72 70.25 11 ER1b ExonRegion 0 23.46 6.10 5.21 5.79 31.66 12.68 20.08 3.46 4.84 9.18 14.98 0.00 9.38 40.20 14.51 79.75 37.14 36.49 25.48 19.86 18.00 17.88 54.82 12 ER1c ExonRegion 0 10.80 8.08 8.72 11.53 15.14 17.16 10.15 4.06 14.06 18.02 32.18 3.15 13.51 30.85 14.22 50.73 40.23 32.82 15.86 17.20 26.43 22.57 45.14 13 E1a_E2a KnownJunction 0 0.00 0.00 5.06 11.49 8.23 7.67 3.89 1.85 20.31 26.70 56.86 12.00 14.28 43.73 18.30 29.99 64.52 9.33 4.80 15.85 46.15 23.33 15.54 14 ER2a ExonRegion 1 4.23 6.10 13.84 23.99 9.81 7.76 2.57 9.76 24.83 33.76 69.66 12.45 13.97 64.76 25.08 94.55 70.08 58.59 29.53 31.91 38.38 62.59 62.77 15 E2_Da NovelBoundary 0 0.00 0.00 3.13 7.52 3.99 0.00 0.00 4.23 4.95 13.89 0.00 5.70 13.31 4.89 0.00 20.76 8.51 4.19 3.95 0.00 0.00 0.00 16.05 16 E2a_E3a KnownJunction 1 0.00 9.21 26.20 23.61 3.90 2.90 2.21 16.63 23.93 29.82 62.28 0.00 33.44 67.40 28.43 152.18 61.71 84.15 38.40 30.49 29.59 88.60 117.55 17 E2a_E5a KnownJunction 0 0.00 3.35 0.00 9.82 4.16 0.00 0.00 0.00 3.56 3.25 2.05 18.46 0.00 28.31 0.00 12.82 13.00 11.36 4.61 9.46 6.30 16.10 0.00 18 I2_AR5 ActiveIntronRegion 0 14.75 6.93 7.29 9.85 8.57 0.58 3.43 5.36 6.30 5.18 0.00 2.43 4.86 0.28 2.11 3.99 1.91 2.18 0.34 1.80 1.46 0.12 1.86 19 ER3a ExonRegion 0 0.79 11.21 14.99 21.63 21.74 19.85 14.43 9.96 23.69 33.87 34.39 41.58 47.29 54.36 26.05 65.43 26.73 44.95 25.28 22.15 33.45 43.55 55.59 20 E3a_E4a KnownJunction 0 0.00 0.00 3.02 5.13 7.56 10.90 14.53 2.14 1.59 9.64 15.58 36.91 48.05 14.13 4.33 22.73 7.29 6.14 0.00 2.43 5.56 9.00 7.68 21 E3a_E5a KnownJunction 0 0.00 17.50 17.39 22.84 32.68 15.79 14.97 16.68 20.66 46.50 26.43 61.67 70.94 60.16 38.32 31.79 28.61 36.85 32.10 13.42 37.81 92.10 23.39 22 E4_Ab NovelBoundary 0 0.00 0.00 0.00 5.19 11.88 15.84 3.31 5.30 3.04 7.47 7.05 18.31 6.82 7.18 4.45 18.71 8.70 8.95 0.00 0.00 8.83 2.45 0.00 23 ER4a ExonRegion 0 0.00 0.00 1.23 5.52 6.62 15.64 8.22 3.27 1.43 8.93 11.29 30.53 27.65 12.82 5.80 22.37 9.38 10.21 0.17 1.23 8.47 6.91 2.32 24 ER4b ExonRegion 1 0.00 0.90 0.63 5.41 3.21 8.17 4.48 4.22 1.99 8.04 15.55 14.91 14.14 14.90 1.24 11.34 7.97 10.19 2.37 4.83 6.67 3.04 2.64 25 E4a_E5a KnownJunction 0 0.00 3.35 1.83 3.63 0.00 0.00 9.01 0.00 3.59 5.96 20.11 18.91 33.76 12.07 4.82 3.85 0.00 10.65 0.00 2.62 2.84 2.88 3.24 26 ER5a ExonRegion 0 5.82 21.24 21.37 25.81 19.72 15.01 12.75 23.81 35.79 63.71 65.62 76.97 128.26 102.48 37.11 84.34 58.80 70.27 38.74 24.96 55.83 100.39 58.43 27 E5a_E6a KnownJunction 1 17.63 17.69 30.54 45.08 23.68 7.84 12.45 37.01 52.08 101.78 80.97 48.47 191.22 120.08 56.49 89.29 82.19 64.09 41.13 29.79 60.60 73.97 67.44 28 ER6a ExonRegion 0 18.99 25.80 20.38 31.92 20.31 17.24 20.04 26.30 49.86 80.92 62.53 80.46 115.09 117.69 46.98 88.33 72.54 83.27 51.54 31.15 52.61 97.46 66.47 29 E6a_E7a KnownJunction 1 30.60 34.40 22.21 40.22 22.92 16.07 34.71 20.09 64.64 80.42 44.06 117.04 170.77 125.02 45.24 102.96 95.75 47.42 45.46 42.57 49.55 111.08 69.74 30 ER7a ExonRegion 0 10.77 15.85 12.75 30.92 15.53 16.50 18.82 15.29 43.62 53.13 59.56 61.83 114.25 100.79 29.38 57.86 65.95 59.13 24.65 34.15 53.34 59.96 49.35 31 E7_Da KnownBoundary 0 28.52 20.13 19.31 35.93 15.87 23.57 19.70 15.61 45.14 54.91 37.33 83.73 86.68 104.42 37.09 52.72 57.88 66.37 30.40 21.41 45.96 42.13 44.13 32 ER7b ExonRegion 0 6.13 34.04 18.45 37.74 22.31 15.22 20.73 15.89 48.12 64.50 60.63 53.66 113.33 105.55 42.29 97.88 80.05 84.94 42.11 43.82 59.75 58.38 57.91 33 E7b_E8a KnownJunction 1 7.56 32.56 15.79 50.61 10.70 0.00 27.78 12.53 43.89 63.29 92.87 74.87 93.50 105.54 10.75 65.11 61.52 75.90 36.05 54.39 39.85 48.99 80.92 34 ER8a ExonRegion 0 9.05 15.20 18.63 34.85 16.82 19.93 13.43 13.75 33.59 69.39 68.44 51.29 92.34 102.47 37.49 73.74 62.15 75.10 33.49 35.16 46.34 58.94 60.65 35 E8a_E9a KnownJunction 0 11.04 17.76 11.15 34.56 12.99 14.25 15.94 12.69 30.58 55.63 57.12 49.22 79.38 125.73 38.82 81.09 57.97 81.70 39.81 31.26 42.75 63.74 71.53 36 ER9a ExonRegion 1 14.69 18.45 22.44 33.11 13.93 17.09 16.71 13.71 27.04 44.63 28.73 50.88 85.41 96.93 29.27 52.90 42.03 51.16 15.69 26.81 34.90 45.43 38.47 37 E9a_E10a KnownJunction 1 8.67 23.94 16.94 45.35 25.98 41.40 20.80 16.10 38.48 40.51 20.32 38.41 99.18 150.10 19.41 51.10 34.50 51.15 25.22 23.59 36.94 48.07 37.39 38 ER10a ExonRegion 0 8.62 18.57 24.35 39.32 36.66 15.42 17.50 20.48 34.55 37.37 32.61 43.05 49.53 77.44 23.56 51.11 40.75 48.87 17.36 24.04 27.12 34.27 26.16 39 E10a_E11a KnownJunction 0 37.93 33.81 35.81 31.90 41.51 2.90 34.98 15.57 41.93 35.59 29.17 74.72 62.50 87.59 26.95 58.79 59.65 53.93 29.27 22.82 34.47 53.58 52.24 40 ER11a ExonRegion 0 21.40 29.07 27.22 59.04 30.27 24.43 28.09 24.60 50.71 49.15 50.89 70.55 101.43 108.39 47.71 76.24 64.53 70.34 26.20 36.43 28.99 74.92 56.20 41 E11a_E12a KnownJunction 1 20.60 30.19 20.19 50.91 27.93 28.90 20.98 18.32 46.85 59.58 26.64 69.32 113.30 69.87 23.12 61.78 81.91 51.86 17.41 32.73 21.99 56.46 52.75 42 ER12a ExonRegion 0 21.41 45.78 20.62 57.28 39.47 34.63 25.92 21.01 43.20 53.46 40.77 66.23 88.52 78.76 32.81 62.30 58.65 49.24 29.84 34.97 41.48 66.54 49.75 43 E12a_E13a KnownJunction 1 20.97 54.20 19.81 89.47 43.63 32.14 31.40 30.27 29.51 71.59 29.01 49.52 103.56 90.47 6.30 42.89 41.89 49.12 46.87 39.82 56.53 80.71 70.60 44 ER13a ExonRegion 0 26.30 43.33 20.80 68.03 43.51 34.77 39.39 22.13 34.16 58.87 62.05 91.40 72.00 102.35 35.00 82.83 39.89 45.08 40.73 24.07 45.01 87.43 57.73 45 E13a_E14a KnownJunction 1 54.38 73.61 20.46 76.68 39.39 56.39 69.73 21.11 41.61 58.45 73.86 54.77 45.45 106.60 75.65 97.92 25.34 36.23 42.54 22.18 37.31 135.94 48.06 46 ER14a ExonRegion 0 41.88 61.25 18.90 62.13 30.59 39.12 23.44 24.61 36.88 51.77 70.44 88.46 52.06 84.66 42.59 57.86 46.00 39.67 32.18 25.61 31.68 85.06 62.13 47 E14a_E15a KnownJunction 0 56.23 62.49 23.74 58.67 20.71 12.78 26.41 20.70 32.15 43.33 50.96 74.87 37.34 93.53 42.28 31.36 39.64 40.46 39.34 9.59 18.35 63.74 59.16 48 ER15a ExonRegion 0 38.52 73.42 29.14 47.24 25.61 25.89 29.91 17.69 36.11 37.79 59.29 71.23 33.38 106.29 47.47 63.76 60.72 30.53 43.11 17.54 34.13 77.02 52.45 49 E15a_E16a KnownJunction 0 33.71 58.08 33.32 56.17 24.11 33.84 35.02 19.26 36.52 36.51 54.38 68.12 53.57 150.80 75.41 69.47 53.20 28.35 32.38 28.63 26.26 70.05 73.58 50 ER16a ExonRegion 0 32.54 37.33 33.88 46.43 36.34 23.85 23.93 16.87 32.94 44.10 28.79 36.81 29.91 48.56 35.21 30.86 31.90 18.98 20.57 16.79 15.85 48.01 30.80 51 ER16b ExonRegion 0 4.23 2.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 1.78 0.00 0.00 0.00 0.00 1.32 2.08 0.00 52 IG33_SR3 SilentIntergenicRegion 0 13.69 5.42 3.47 10.05 2.04 4.89 2.52 4.90 4.20 5.20 8.09 11.15 7.67 7.64 10.91 7.94 0.00 5.25 1.21 0.81 0.84 7.14 1.12 53 IG33_AR2 ActiveIntergenicRegion 0 8.30 6.43 7.69 10.03 5.33 1.87 2.31 3.37 5.57 6.21 3.64 4.37 6.85 4.19 8.46 3.02 5.28 1.34 0.00 1.55 0.00 14.53 3.39