Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 UTP14A Gene 0 54.97 78.17 107.52 89.88 45.04 33.97 35.59 35.88 23.65 51.96 124.97 103.16 95.84 120.67 109.69 110.62 101.93 36.04 60.92 25.24 55.69 52.75 49.24 2 425117 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 371051 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 394422 Transcript 0 36.73 44.54 111.63 82.34 36.67 22.65 13.62 27.81 17.31 26.89 57.55 35.43 28.14 57.30 99.56 40.71 35.61 17.83 23.35 18.66 23.01 20.31 17.23 5 427972 Transcript 0 3.39 4.47 1.72 4.09 2.41 2.93 0.00 0.00 0.00 0.00 2.13 4.98 3.75 1.79 0.00 0.00 3.14 0.00 0.00 2.02 0.00 4.48 3.08 6 371042 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 498179 Transcript 0 5.01 5.82 6.27 5.07 5.74 2.09 3.76 2.73 1.34 3.81 3.87 7.60 6.08 2.05 4.19 3.15 2.30 2.25 3.96 3.71 1.14 0.72 1.12 8 ER1a ExonRegion 1 36.19 25.76 10.82 4.54 18.73 36.25 17.26 4.32 3.62 8.53 33.31 5.63 0.00 46.07 28.34 37.94 28.17 3.45 25.80 4.68 22.04 12.22 25.16 9 ER1b ExonRegion 1 171.16 151.10 62.54 57.50 113.79 128.19 90.48 34.15 34.61 66.11 291.72 12.01 12.92 205.80 127.82 188.81 222.34 52.99 137.51 47.73 133.22 109.29 149.82 10 E1a_E2a KnownJunction 1 38.60 52.89 95.15 89.73 21.73 35.83 58.38 52.37 47.48 100.81 129.61 18.91 41.07 82.58 26.33 70.24 102.38 73.29 47.34 48.07 75.92 42.56 30.82 11 ER2a ExonRegion 1 9.83 19.16 51.00 39.90 8.41 17.37 26.85 25.06 24.25 48.79 104.35 28.94 48.32 44.54 19.81 40.28 70.88 35.81 28.12 21.19 59.76 17.46 15.65 12 E2a_E3a KnownJunction 1 31.71 51.24 90.45 100.65 66.38 21.92 64.48 70.85 60.53 126.12 203.16 60.92 27.11 108.89 41.41 59.98 161.10 111.34 73.88 124.32 166.00 46.29 66.33 13 ER3a ExonRegion 1 4.92 10.91 99.07 82.66 9.87 15.94 10.44 40.97 31.68 86.44 337.22 84.94 52.91 231.65 109.14 135.84 242.55 51.19 102.11 47.74 150.35 79.85 91.16 14 E3a_E4a KnownJunction 1 46.90 138.73 143.46 216.39 57.05 88.64 97.42 111.15 90.54 175.68 240.53 271.14 143.50 417.98 165.03 346.75 217.67 259.37 272.10 208.75 124.48 196.93 213.58 15 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 ER4a ExonRegion 0 9.80 35.57 95.22 103.26 38.53 29.45 17.15 37.02 29.60 61.05 161.29 125.22 89.18 186.87 127.34 233.47 113.75 76.70 112.12 55.78 72.21 95.59 102.38 17 E4a_E5a KnownJunction 1 38.01 142.61 161.20 161.52 152.04 100.57 117.47 86.54 80.50 151.77 265.54 258.83 175.15 228.03 70.21 193.28 228.42 170.66 155.11 202.75 139.93 126.75 100.30 18 ER5a ExonRegion 0 26.61 75.21 105.08 99.93 71.93 78.78 67.24 31.83 26.80 63.97 221.47 187.32 119.55 197.47 94.14 133.29 177.42 53.20 66.83 38.83 77.30 71.00 60.52 19 E5_Da NovelBoundary 0 0.00 13.42 24.04 18.78 8.66 0.00 9.10 0.00 0.00 7.04 6.84 24.91 6.82 2.47 4.45 0.00 8.13 3.23 23.06 3.26 2.78 3.12 0.00 20 E5a_E6a KnownJunction 0 144.40 120.57 150.08 195.15 53.14 51.16 44.65 75.95 79.86 138.53 245.90 267.69 194.79 228.15 167.50 231.31 233.01 141.94 108.71 68.14 108.42 103.48 101.16 21 E5a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 E6_Aa NovelBoundary 0 0.00 11.31 12.71 14.08 20.03 8.12 26.37 0.00 1.24 14.10 0.00 0.00 8.12 9.65 13.35 35.89 4.49 6.22 21.93 8.76 3.15 2.94 11.61 23 ER6a ExonRegion 0 57.01 59.52 103.69 96.51 28.35 35.31 30.37 43.16 22.73 71.03 192.63 191.47 113.28 220.10 128.88 148.97 183.56 55.01 71.67 35.00 85.76 69.92 62.20 24 E6a_E8a KnownJunction 0 69.79 144.45 155.52 186.76 87.35 78.31 105.02 87.90 106.48 173.34 253.17 323.96 181.48 329.16 167.75 201.91 201.12 157.36 162.55 159.28 127.63 174.64 155.02 25 E7_Aa NovelBoundary 0 23.41 3.29 26.20 27.50 8.66 8.69 6.23 12.65 7.06 14.21 39.01 25.21 28.41 29.25 6.18 16.75 31.42 7.09 14.12 21.67 6.24 6.12 36.96 26 E7_Ab NovelBoundary 0 25.26 5.85 4.44 13.88 20.12 5.22 2.12 2.34 1.56 9.94 7.26 38.56 21.10 2.24 13.23 3.50 18.33 0.00 4.14 3.13 3.15 7.90 4.01 27 ER7a ExonRegion 0 3.39 4.47 1.72 4.09 2.41 2.93 0.00 0.00 0.00 0.00 2.13 4.98 3.75 1.79 0.00 0.00 3.14 0.00 0.00 2.02 0.00 4.48 3.08 28 ER7b ExonRegion 0 4.23 14.49 2.45 8.82 2.68 5.21 2.28 1.13 0.00 0.72 9.30 18.54 5.28 10.61 3.63 5.11 6.91 0.12 14.73 2.39 0.14 8.33 14.96 29 E7a_E8a KnownJunction 0 0.00 18.81 4.94 16.98 0.00 2.90 6.36 3.37 0.00 1.10 12.69 22.36 0.00 12.60 8.90 11.62 9.07 0.00 27.48 0.00 0.00 5.51 19.80 30 Ix_SR2 SilentIntronRegion 0 10.75 10.20 13.60 10.97 11.37 4.81 8.76 4.61 3.35 8.79 5.56 16.04 19.23 6.66 9.31 11.77 5.70 4.00 6.31 7.48 3.45 6.26 5.26 31 E8_Aa NovelBoundary 0 19.26 12.43 16.62 24.31 22.75 6.98 16.16 5.83 8.68 16.92 7.37 20.26 29.54 13.83 4.45 38.11 8.79 8.00 0.00 11.31 8.28 8.39 3.67 32 ER8a ExonRegion 0 64.85 79.92 122.90 106.24 47.07 53.47 46.63 46.68 29.71 68.86 184.85 138.87 128.78 221.39 166.12 161.26 180.89 38.19 79.13 23.53 85.89 71.45 69.08 33 E8_Da NovelBoundary 0 25.86 15.85 6.83 3.73 23.68 2.67 7.86 4.93 2.29 4.22 4.74 6.30 0.00 2.47 0.00 4.10 3.83 3.61 4.14 0.00 0.00 0.00 0.00 34 E8a_E9a KnownJunction 0 53.49 129.06 124.01 102.38 62.56 77.51 53.92 61.20 69.36 96.30 164.94 94.53 130.67 229.44 155.39 175.59 134.55 118.56 82.17 78.75 106.44 37.47 91.00 35 ER9a ExonRegion 0 41.46 103.05 83.75 91.11 47.23 50.07 46.98 39.79 28.81 61.84 172.27 68.31 90.00 195.30 106.95 165.63 139.02 50.84 71.42 18.70 78.85 49.89 68.69 36 E9a_E10a KnownJunction 0 205.59 397.43 145.97 219.95 172.07 138.56 171.00 111.76 103.21 162.57 231.48 142.40 184.73 224.09 105.82 225.15 255.63 140.53 142.97 129.75 137.45 115.92 118.65 37 ER10a ExonRegion 0 72.18 181.60 130.50 129.43 77.38 52.68 64.41 56.90 34.02 71.75 185.76 161.83 133.21 197.08 139.12 169.53 135.76 51.10 96.79 34.27 82.87 83.64 80.19 38 E10a_E11a KnownJunction 0 140.40 341.12 202.48 282.05 216.98 130.95 203.90 141.01 98.12 204.88 282.12 396.73 321.25 287.30 199.52 264.72 272.09 231.60 265.70 229.46 149.62 193.80 183.10 39 ER11a ExonRegion 0 54.76 105.64 142.08 166.69 60.38 54.45 66.33 65.99 32.90 101.13 181.25 193.60 111.12 189.27 147.15 189.00 124.67 73.10 110.83 32.57 79.22 105.89 89.30 40 E11_Ab KnownBoundary 0 88.68 190.43 236.80 327.63 93.38 109.43 201.34 153.78 117.50 226.66 243.01 356.67 180.35 299.37 194.33 294.45 216.74 250.25 299.87 210.73 159.32 224.91 144.01 41 ER11b ExonRegion 0 50.42 76.34 145.22 179.10 44.39 51.44 49.26 61.47 25.97 70.46 189.47 221.25 103.54 191.94 151.46 206.52 126.20 73.58 80.29 34.86 86.45 101.45 81.25 42 E11_Da NovelBoundary 0 6.52 26.18 81.40 48.81 14.69 2.84 36.30 17.46 3.24 17.35 11.58 20.41 22.24 14.77 8.90 19.40 8.23 18.36 42.35 11.44 12.48 16.47 3.76 43 E11a_E12a KnownJunction 1 111.95 196.22 254.19 348.37 117.66 140.09 121.45 140.39 99.36 161.57 217.48 391.33 268.98 325.98 230.55 232.33 253.95 309.24 144.29 252.54 171.00 147.82 155.96 44 Ix Intron 0 6.61 18.81 24.29 26.07 12.38 5.73 8.73 6.55 5.96 14.43 5.14 10.69 8.01 6.88 5.90 3.09 4.58 3.51 16.21 6.64 3.57 3.86 7.13 45 Ix_SR1 SilentIntronRegion 0 6.65 18.94 24.45 26.25 12.46 5.77 8.79 6.60 6.00 14.53 5.18 10.75 8.03 6.93 5.94 3.11 4.61 3.53 16.32 6.69 3.59 3.88 7.18 46 E12_Aa NovelBoundary 0 3.63 9.21 9.88 29.63 0.00 0.00 3.93 13.72 4.22 11.60 2.58 6.15 13.64 6.77 0.00 0.00 0.00 6.34 0.00 2.68 2.59 0.00 0.00 47 ER12a ExonRegion 0 86.57 170.18 155.03 142.78 77.17 53.94 61.83 57.85 37.68 79.07 192.93 196.68 201.34 215.66 185.25 174.60 162.97 60.81 79.80 38.62 93.61 80.32 72.33 48 E12_Da KnownBoundary 0 6.37 0.00 3.19 9.32 3.65 0.00 1.68 5.18 0.00 8.97 4.37 6.30 0.00 0.00 0.00 4.02 9.54 2.28 0.00 3.26 0.00 0.00 0.00 49 E12a_E13a KnownJunction 0 133.43 426.04 285.62 266.77 172.24 104.20 155.81 123.22 99.45 153.68 226.85 312.55 262.81 242.81 275.17 230.62 280.13 187.16 117.18 215.85 148.82 155.78 144.86 50 ER12b ExonRegion 0 5.01 5.82 6.27 5.07 5.74 2.09 3.76 2.73 1.34 3.81 3.87 7.60 6.08 2.05 4.19 3.15 2.30 2.25 3.96 3.71 1.14 0.72 1.12 51 ER13a ExonRegion 0 114.71 234.04 278.53 213.84 84.45 47.81 77.10 85.83 53.57 89.77 235.25 176.95 245.86 245.90 224.77 228.55 200.87 54.86 149.90 50.77 113.00 129.48 105.80 52 E13_Da KnownBoundary 1 197.07 368.95 421.07 502.53 149.92 115.27 233.58 218.80 142.19 222.82 300.29 494.41 418.64 319.09 263.68 330.77 374.10 250.88 219.87 242.37 185.08 256.57 173.37 53 ER13b ExonRegion 0 148.02 244.30 257.75 203.36 109.19 62.81 88.28 73.76 48.03 103.00 238.85 226.70 243.19 217.63 221.74 222.32 198.60 55.67 112.94 49.91 85.45 120.50 94.84 54 E13b_E14a KnownJunction 0 181.14 293.83 296.50 238.10 113.16 126.86 160.75 123.84 81.94 191.82 203.10 204.52 245.93 275.30 299.40 242.24 217.95 88.92 178.73 151.68 120.03 127.00 117.89 55 ER14a ExonRegion 0 137.54 124.14 222.49 166.86 82.93 67.92 71.35 76.22 42.36 107.74 207.07 235.29 231.70 212.65 250.87 235.55 180.51 70.23 115.21 36.08 93.18 96.49 94.52 56 E14a_E15a KnownJunction 0 109.80 194.64 307.59 361.03 274.96 215.16 210.61 205.37 160.15 258.84 399.52 432.14 515.88 340.10 285.19 492.35 430.67 335.11 319.35 223.26 295.30 186.27 256.43 57 ER15a ExonRegion 0 81.25 74.80 267.94 230.46 93.68 54.45 64.32 96.98 63.62 128.97 278.53 188.55 197.54 234.60 272.75 270.85 234.89 95.10 161.98 42.55 125.41 113.16 130.59 58 E15_Da NovelBoundary 0 0.00 6.64 5.74 19.05 0.00 0.00 8.48 13.14 12.07 15.50 4.90 12.15 13.47 19.90 4.45 3.85 0.00 4.23 0.00 8.88 10.75 11.14 11.69 59 E15a_E16a KnownJunction 0 137.43 151.03 406.90 381.64 167.15 123.39 132.89 183.52 154.31 253.71 349.67 254.63 327.90 205.19 245.63 410.41 329.87 513.28 277.28 188.81 284.67 215.42 254.98 60 Ix Intron 0 11.16 8.56 12.80 12.51 11.98 6.05 6.28 7.89 5.10 9.82 6.21 9.40 10.89 10.34 11.86 11.12 7.97 6.66 5.82 7.40 3.63 4.30 4.50 61 Ix_AR1 ActiveIntronRegion 0 19.99 10.72 16.66 12.73 12.35 4.84 5.82 11.89 5.87 11.27 7.44 6.77 8.10 10.49 13.24 16.33 10.16 13.22 9.10 9.82 4.12 5.26 5.81 62 E16_Aa NovelBoundary 0 78.98 9.08 30.31 20.21 17.32 0.00 10.73 19.59 7.35 19.07 7.63 18.91 0.00 15.13 22.25 8.72 3.83 21.93 13.84 5.37 11.18 5.63 3.84 63 ER16a ExonRegion 0 128.11 82.80 254.51 181.50 81.31 59.86 41.42 61.19 49.28 101.81 197.96 143.00 125.23 161.55 241.82 187.93 152.96 66.90 128.68 48.43 102.86 92.29 80.75 64 E16_Da KnownBoundary 1 15.93 23.09 133.53 72.45 39.81 0.00 9.58 31.18 36.46 51.33 119.93 35.71 60.22 52.45 129.55 28.11 80.41 28.69 25.69 23.46 58.38 56.82 15.54 65 ER16b ExonRegion 0 36.73 44.54 111.63 82.34 36.67 22.65 13.62 27.81 17.31 26.89 57.55 35.43 28.14 57.30 99.56 40.71 35.61 17.83 23.35 18.66 23.01 20.31 17.23