Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FGF13 Gene 0 15.35 92.98 145.53 178.19 181.43 54.63 108.98 176.66 270.21 151.74 0.03 0.00 0.10 0.04 0.06 0.00 0.00 11.54 0.52 258.21 23.47 31.93 32.36 2 448673 Transcript 0 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 3 436198 Transcript 0 0.63 10.46 32.18 26.78 65.62 51.20 82.91 29.39 64.89 49.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.04 0.94 33.48 11.76 5.55 35.31 4 421460 Transcript 0 0.00 0.24 0.65 0.55 2.66 0.85 0.49 1.21 0.96 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.76 0.00 0.00 0.68 5 455663 Transcript 0 0.00 0.00 0.41 1.31 0.00 0.00 1.99 2.20 0.43 0.40 0.55 0.00 2.19 0.76 1.68 0.00 0.00 0.00 0.90 0.09 0.00 0.00 0.00 6 370603 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 441825 Transcript 0 3.17 9.15 48.40 55.20 62.88 32.09 29.79 63.95 80.28 68.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.63 0.00 41.49 24.24 4.17 14.68 8 305414 Transcript 0 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 1.09 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.67 9 315930 Transcript 0 6.89 14.59 4.96 14.33 4.60 7.30 6.84 0.70 17.92 3.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 218.62 1.38 8.56 21.16 10 ER1a ExonRegion 0 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 11 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 E2_Aa NovelBoundary 0 0.00 13.42 14.69 9.12 19.27 55.88 86.43 11.95 22.31 10.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.77 0.00 20.65 15.38 3.12 16.99 13 ER2a ExonRegion 0 1.26 8.16 30.98 27.29 103.83 76.10 144.31 30.23 77.41 46.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.05 1.89 58.66 23.52 8.16 55.42 14 E2a_E3a KnownJunction 0 0.00 12.76 33.38 26.27 27.42 26.29 21.51 28.55 52.37 51.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.03 0.00 8.31 0.00 2.94 15.19 15 I2 Intron 0 0.00 0.19 0.52 0.19 0.25 0.52 0.12 0.73 0.52 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.83 0.78 13.26 16 I2_SR1 SilentIntronRegion 0 0.00 0.00 0.00 0.60 0.00 0.00 0.23 0.05 0.23 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 1.38 31.76 17 ER3a ExonRegion 0 1.67 18.47 85.45 75.88 42.01 21.68 18.03 101.39 177.22 125.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24.23 0.76 102.70 55.40 18.36 53.92 18 E3_Da NovelBoundary 0 0.00 2.43 3.25 0.00 0.00 0.00 4.06 4.39 2.69 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.91 0.00 2.75 0.00 12.43 19.80 19 E3a_E8b KnownJunction 0 6.82 25.13 99.70 116.14 129.97 78.25 74.37 146.10 151.53 140.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36.27 0.00 93.64 44.60 11.51 44.30 20 E3a_E11a NovelJunction 0 0.00 19.01 106.56 30.83 51.19 33.67 34.98 48.88 124.13 65.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.10 0.00 86.48 16.56 11.76 0.00 21 I3 Intron 0 0.00 0.00 2.13 1.42 0.93 0.00 4.62 4.50 2.79 9.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 7.68 3.08 3.88 14.36 22 I3_SR1 SilentIntronRegion 0 0.00 0.00 2.13 1.42 0.94 0.00 4.63 4.51 2.79 9.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.93 0.00 7.70 3.09 3.89 14.39 23 ER4a ExonRegion 0 0.00 0.94 2.54 0.94 3.72 3.40 1.84 2.37 0.00 3.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.91 0.00 0.00 2.72 24 E4a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 E4a_E8b NovelJunction 0 0.00 8.42 0.00 4.13 20.29 0.00 8.57 0.00 3.27 11.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.89 0.00 0.00 0.00 26 I4_AR1 ActiveIntronRegion 0 0.37 0.36 3.32 4.49 1.11 0.81 3.79 4.56 4.51 12.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.07 0.00 6.43 1.17 1.66 10.42 27 I4_SR1 SilentIntronRegion 0 0.82 0.13 9.30 9.90 4.43 2.23 7.50 13.33 15.09 17.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 11.39 0.76 2.68 17.85 28 I4_AR2 ActiveIntronRegion 0 1.29 2.26 11.49 22.89 6.21 2.29 21.24 27.43 17.01 26.20 0.14 0.52 0.00 0.00 0.00 0.00 0.00 0.53 0.00 11.86 1.36 7.93 12.59 29 I4_SR2 SilentIntronRegion 0 0.60 3.09 10.19 12.31 8.91 0.99 23.35 24.64 14.50 24.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 9.35 0.68 0.47 3.49 30 I4_AR4 ActiveIntronRegion 0 1.18 9.96 31.13 42.31 32.77 2.65 40.57 27.82 13.34 23.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 7.11 0.49 0.46 1.96 31 I4_AR6 ActiveIntronRegion 0 0.89 14.26 27.19 54.41 29.68 0.52 35.13 16.96 14.42 23.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 16.32 1.24 0.00 3.31 32 E5_Aa NovelBoundary 0 30.60 8.35 30.84 43.98 15.11 14.48 31.22 20.41 52.98 18.51 0.00 0.00 0.00 0.00 0.00 7.35 4.02 23.59 4.05 32.47 3.15 6.12 8.11 33 ER5a ExonRegion 0 0.00 0.00 0.00 0.02 0.00 0.00 2.32 0.12 0.04 0.06 1.64 0.00 6.57 2.27 3.58 0.00 0.00 0.00 2.71 0.00 0.00 0.00 0.00 34 E5_Da NovelBoundary 0 14.52 10.00 97.34 99.59 16.98 19.93 40.94 111.72 57.06 60.90 10.48 0.00 14.12 8.71 0.00 16.92 36.37 72.50 14.40 25.57 12.36 12.19 16.56 35 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER6a ExonRegion 0 0.00 0.00 1.23 3.92 0.00 0.00 3.64 6.48 1.24 1.15 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 37 ER6b ExonRegion 0 0.00 0.00 1.23 4.09 6.20 0.00 6.66 6.86 1.24 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.48 0.00 1.61 0.00 38 E6_Da NovelBoundary 0 0.00 2.89 41.81 47.91 17.74 0.00 53.48 39.35 30.61 29.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.74 2.97 2.57 3.50 39 E6a_E8b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 I6_SR1 SilentIntronRegion 0 2.05 3.36 8.05 23.25 15.34 1.82 24.54 16.26 7.11 14.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 8.27 1.22 1.49 2.86 41 I6_AR1 ActiveIntronRegion 0 1.66 4.62 10.51 29.88 17.22 1.10 21.81 11.79 5.00 15.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 8.94 1.49 0.47 3.40 42 ER7a ExonRegion 0 0.00 0.00 0.07 1.27 3.25 0.00 0.11 0.54 1.37 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 43 E7a_E8b KnownJunction 0 0.00 0.00 0.00 0.00 3.65 0.00 0.00 1.93 2.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44 ER8a ExonRegion 0 3.17 9.15 48.40 55.20 62.88 32.09 29.79 63.95 80.28 68.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.63 0.00 41.49 24.24 4.17 14.68 45 ER8b ExonRegion 0 0.42 21.76 97.77 119.29 122.76 93.30 178.13 135.42 194.86 168.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.46 0.63 109.05 40.25 27.52 28.73 46 E8a_E11a KnownJunction 0 0.00 20.72 102.15 114.24 80.98 57.07 43.59 100.18 169.07 152.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.35 4.42 119.33 44.23 19.66 8.54 47 ER9a ExonRegion 0 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.02 0.87 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 1.34 48 E9a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 E10_Aa NovelBoundary 0 0.00 0.00 3.37 2.06 4.33 0.00 0.00 0.00 3.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39.95 0.00 3.06 12.21 50 ER10a ExonRegion 0 1.04 5.90 2.61 5.52 1.73 1.08 0.92 1.40 8.27 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 103.34 2.77 3.22 5.79 51 E10a_E11a KnownJunction 0 12.74 23.29 7.30 23.14 7.47 13.51 12.76 0.00 27.57 4.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 333.90 0.00 13.90 36.54 52 ER11a ExonRegion 0 11.08 59.85 139.25 164.63 131.18 64.75 87.57 173.59 327.19 189.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.30 0.74 424.40 56.38 46.24 52.55 53 E11_Da KnownBoundary 0 21.56 107.94 161.29 194.75 178.18 85.52 109.61 249.03 432.32 253.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30.14 0.00 510.38 85.19 86.52 69.40 54 ER11b ExonRegion 0 8.28 80.98 177.03 179.98 134.73 73.35 89.56 250.17 405.95 254.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26.90 0.00 511.14 63.19 74.15 56.31 55 E11b_E12a KnownJunction 0 6.96 90.64 220.19 200.31 148.73 90.00 117.83 286.66 436.28 280.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30.51 0.00 581.84 61.34 61.85 39.10 56 ER12a ExonRegion 0 8.49 111.48 209.86 230.66 146.19 45.26 113.11 245.36 445.19 270.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28.64 1.56 521.58 64.56 48.52 55.15 57 E12a_E13a KnownJunction 0 14.52 175.56 216.67 237.77 257.13 71.49 154.92 342.15 523.23 327.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37.06 0.00 581.14 84.20 46.48 87.58 58 ER13a ExonRegion 0 38.06 213.15 282.07 297.21 259.91 98.25 157.90 327.31 534.89 343.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48.98 0.96 612.45 73.10 71.66 77.29 59 E13_Da NovelBoundary 0 20.89 350.66 320.27 337.89 307.73 122.32 278.23 304.28 586.74 358.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44.52 0.00 633.42 84.33 68.95 60.10 60 E13b_E14a KnownJunction 0 27.49 211.28 334.08 364.19 412.14 175.30 344.16 350.28 620.16 338.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35.48 0.00 671.13 102.06 47.39 85.88 61 ER13b ExonRegion 0 23.72 243.05 313.48 321.17 327.18 134.44 268.58 309.87 587.91 337.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35.68 0.00 619.29 97.12 58.70 68.96 62 ER14a ExonRegion 0 35.12 168.79 316.07 344.90 384.81 145.50 241.00 330.24 591.20 331.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41.23 0.00 627.32 95.86 57.43 79.93 63 E14_Da KnownBoundary 0 59.94 187.86 363.03 391.13 485.14 153.04 221.17 366.34 572.82 342.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43.73 0.00 719.90 95.94 75.56 70.68 64 ER14b ExonRegion 0 33.52 195.66 292.65 373.54 397.26 101.92 217.33 359.09 524.33 277.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.80 0.71 430.18 24.70 59.15 48.02 65 ER14c ExonRegion 0 2.12 15.86 10.29 9.00 15.52 12.84 5.03 3.46 6.67 3.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.34 0.00 0.00 0.00 66 IG9_SR3 SilentIntergenicRegion 0 0.31 1.32 3.48 2.41 0.28 0.19 5.56 3.92 11.52 4.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 18.15 0.53 0.38 1.24 67 IG9_AR2 ActiveIntergenicRegion 0 0.41 2.54 1.90 3.83 1.23 0.22 5.82 0.50 10.80 4.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 20.57 0.46 0.32 1.60 68 IG9_AR1 ActiveIntergenicRegion 0 0.00 2.65 2.11 4.84 0.66 0.63 3.58 3.83 15.50 6.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.41 0.00 0.34 0.84 69 IG9_SR1 SilentIntergenicRegion 0 0.00 1.11 0.18 6.33 0.73 0.38 4.94 0.85 15.14 4.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.56 1.44 0.00 0.96