Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP4-655L22.1 Gene 0 42.70 40.20 32.56 70.31 96.74 38.63 37.92 45.73 53.47 48.27 13.89 30.14 18.48 20.29 27.88 26.38 12.52 11.21 29.06 48.43 13.34 21.36 17.08 2 424799 Transcript 0 22.39 25.27 21.61 38.53 46.98 23.45 30.70 24.28 25.70 27.01 7.96 17.32 14.03 11.19 11.63 12.54 12.02 5.37 15.33 21.06 6.66 9.12 8.70 3 ER1a ExonRegion 0 0.53 1.89 0.00 0.82 1.37 0.52 2.42 0.00 0.00 1.37 2.33 2.18 6.24 4.89 0.00 0.44 3.27 0.00 2.56 3.43 0.17 0.84 1.18 4 E1_Da NovelBoundary 0 4260.46 5200.32 4196.54 4494.30 3847.03 3061.25 5935.82 4725.57 4572.12 3833.44 1696.53 1585.12 2017.08 1120.32 1968.24 4808.82 4023.00 5153.19 3591.73 5441.27 2402.71 2071.47 4729.20 5 E1a_E2a KnownJunction 0 13.34 24.07 24.07 27.00 18.85 21.64 42.84 15.61 10.19 19.61 4.74 12.60 14.28 4.53 0.00 4.27 17.95 2.07 7.72 0.00 3.15 0.00 3.84 6 I1 Intron 0 37.94 58.73 59.01 123.76 101.20 59.08 49.12 48.38 68.47 62.74 17.25 54.25 47.49 34.60 23.78 25.49 17.78 21.07 21.35 71.28 7.41 20.45 14.32 7 I1_AR1 ActiveIntronRegion 0 16.32 28.33 39.96 51.03 105.15 84.86 67.85 32.04 44.87 36.99 13.46 61.14 37.61 30.68 24.24 22.17 21.35 12.57 18.23 44.45 6.03 15.55 5.84 8 I1_AR2 ActiveIntronRegion 0 21.42 38.19 39.72 90.27 55.13 43.56 33.34 29.54 54.10 46.56 20.51 48.70 34.53 33.20 14.74 29.71 19.41 26.95 23.33 82.98 6.45 13.08 10.45 9 I1_SR2 SilentIntronRegion 0 17.08 54.65 44.01 88.32 50.65 38.81 31.73 35.73 52.25 54.42 22.18 59.56 24.60 38.13 13.16 37.19 17.54 35.73 36.15 77.56 7.38 23.26 18.20 10 I1_AR3 ActiveIntronRegion 0 25.92 73.84 43.80 97.27 55.09 40.46 34.41 32.63 43.92 41.86 18.68 49.30 21.84 27.42 9.81 20.85 17.13 14.02 16.48 77.82 8.03 24.20 6.75 11 I1_SR3 SilentIntronRegion 0 25.88 40.17 34.69 88.45 57.59 43.20 46.88 28.93 44.20 40.46 10.46 40.60 26.60 28.62 6.28 14.28 22.57 9.21 12.90 62.16 5.82 13.12 10.59 12 I1_AR4 ActiveIntronRegion 0 43.02 50.77 66.63 138.32 102.97 61.04 50.42 47.58 65.95 59.97 16.29 63.53 52.41 33.86 26.05 26.18 19.18 19.93 21.55 77.44 7.27 23.20 13.51 13 I1_SR4 SilentIntronRegion 0 14.57 66.79 58.54 96.24 95.75 35.35 28.29 51.49 59.68 53.76 13.28 23.49 28.67 25.08 22.23 9.80 4.19 16.15 11.61 44.89 1.95 13.72 15.72 14 I1_AR5 ActiveIntronRegion 0 44.94 72.50 62.12 135.07 123.59 66.24 56.02 59.55 84.75 78.75 18.29 50.05 55.34 39.01 27.49 26.90 17.26 23.73 22.93 67.14 8.54 19.99 18.35 15 E2_Aa NovelBoundary 0 1610.95 2090.75 1824.68 1944.44 1467.49 1001.64 1829.71 2109.48 1803.40 1727.28 598.20 414.89 268.00 223.26 558.50 1769.88 1306.22 2579.98 1594.12 1993.70 767.52 861.37 1887.72 16 ER2a ExonRegion 0 53.31 49.84 40.75 87.78 120.72 48.21 46.85 57.23 66.92 60.06 16.80 37.17 21.56 24.17 34.89 32.90 14.84 14.03 35.73 59.74 16.65 26.52 21.07 17 IG49 Intergenic 0 8.43 8.07 6.58 14.00 15.41 6.60 7.63 5.84 7.54 8.59 2.54 10.54 7.95 4.68 5.24 7.66 3.50 4.79 5.94 10.58 2.94 8.95 9.88 18 IG49_AR1 ActiveIntergenicRegion 0 8.29 10.06 8.65 14.80 20.91 5.99 8.50 8.54 7.91 13.20 3.44 7.98 5.30 6.53 4.08 11.62 3.06 3.71 7.17 14.52 3.38 7.50 11.54 19 IG49_SR4 SilentIntergenicRegion 0 12.15 9.13 5.25 16.84 21.90 7.20 6.89 6.61 4.08 6.91 2.32 9.01 3.61 5.29 3.63 7.01 4.24 6.94 8.43 10.71 1.79 12.05 7.55 20 IG49_AR4 ActiveIntergenicRegion 0 13.13 9.68 11.63 20.29 17.06 9.37 7.39 9.52 12.72 15.14 4.55 10.06 14.87 5.59 6.95 12.73 4.87 6.86 9.59 16.75 4.97 14.70 14.48 21 IG49_SR5 SilentIntergenicRegion 0 6.60 8.26 6.99 12.64 9.72 7.03 6.82 6.19 9.88 6.16 4.30 19.89 14.73 5.60 8.14 4.92 5.08 5.26 2.73 10.70 4.76 12.82 9.01 22 IG49_AR6 ActiveIntergenicRegion 0 1.09 5.22 2.82 4.19 8.27 7.56 4.07 2.65 4.74 4.40 1.99 31.49 10.37 7.97 8.44 1.53 1.70 0.95 0.00 4.38 0.00 11.81 4.54