Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RPL39 Gene 0 2357.76 6012.58 6362.06 3679.29 2549.24 869.42 866.58 844.84 324.93 1099.78 1548.46 226.97 75.73 664.82 1393.32 1257.97 866.13 516.33 1909.56 718.64 571.10 1182.55 659.94 2 361575 Transcript 1 56840.88 122911.41 60119.89 34073.94 58084.94 14706.06 14856.11 6734.48 2523.32 8538.87 20068.96 580.86 405.81 9103.57 17154.74 17623.81 11648.71 5336.89 24941.85 9469.71 7790.82 18298.06 9326.99 3 468844 Transcript 0 27.67 61.52 51.20 19.92 29.89 9.08 9.09 6.40 5.40 6.04 23.29 5.66 2.53 12.14 18.62 15.19 14.09 5.74 17.43 6.56 7.46 13.48 8.06 4 422326 Transcript 0 3.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 477403 Transcript 0 287.49 1625.52 19.21 12.30 14.53 2.14 19.10 2.37 0.71 0.50 1.16 3.23 2.42 1.80 1.05 3.61 2.14 2.23 1.14 1.86 0.34 1.04 3.26 6 IG29 Intergenic 0 10.28 7.17 17.98 21.34 12.48 4.23 10.42 13.07 6.76 5.75 3.13 6.48 8.33 4.89 6.68 7.31 5.03 9.79 8.52 14.71 1.44 2.17 3.30 7 IG29_SR13 SilentIntergenicRegion 0 8.23 6.10 7.60 8.51 12.98 5.17 9.77 6.06 2.42 3.69 0.67 18.16 13.22 12.77 11.28 5.62 6.88 4.68 6.00 6.81 1.96 2.24 5.79 8 IG29_AR11 ActiveIntergenicRegion 0 11.24 11.30 18.20 27.86 18.91 8.71 16.54 15.86 10.26 7.07 7.06 19.30 10.13 17.34 14.05 21.39 13.28 13.77 12.48 25.87 4.35 4.88 9.47 9 IG29_SR12 SilentIntergenicRegion 0 12.89 7.27 23.59 34.45 31.04 5.15 15.39 28.98 11.83 9.64 4.53 15.73 20.07 11.98 15.89 10.82 6.65 12.23 13.14 21.69 0.85 6.38 5.93 10 IG29_AR10 ActiveIntergenicRegion 0 49.52 14.99 47.79 68.25 57.55 10.07 41.15 39.35 17.10 15.14 20.87 41.53 35.00 31.88 35.67 23.06 13.94 33.60 32.21 47.52 4.06 11.56 13.89 11 IG29_SR11 SilentIntergenicRegion 0 13.57 10.40 24.23 27.45 16.99 5.31 16.65 20.42 8.54 8.79 5.71 7.52 10.82 6.63 9.50 10.90 9.52 14.82 13.28 24.48 1.80 2.45 4.94 12 IG29_AR9 ActiveIntergenicRegion 0 7.35 18.28 39.46 30.88 22.72 11.09 14.80 19.01 4.84 9.34 2.77 5.35 14.81 9.60 8.96 5.27 4.98 21.96 9.52 25.76 0.00 2.39 5.41 13 IG29_SR10 SilentIntergenicRegion 0 10.21 8.92 29.74 28.52 14.01 4.01 14.11 18.53 7.29 6.05 2.41 6.79 10.11 3.66 5.93 7.51 3.47 8.35 5.26 10.34 0.60 0.95 2.95 14 IG29_SR9 SilentIntergenicRegion 0 6.96 5.87 12.59 27.85 9.66 5.44 8.17 11.98 8.12 5.49 1.08 2.47 3.67 2.02 5.94 5.48 3.71 16.35 11.49 16.55 1.76 2.00 4.00 15 IG29_AR7 ActiveIntergenicRegion 0 8.06 6.85 22.84 24.48 12.73 5.50 11.03 15.04 9.67 2.50 1.34 2.20 4.77 2.52 3.48 5.86 0.97 10.48 10.27 19.34 0.96 2.36 0.86 16 IG29_SR7 SilentIntergenicRegion 0 12.21 7.63 17.63 20.49 11.09 3.18 8.45 11.20 7.10 5.29 2.07 4.03 7.56 1.86 3.61 5.14 2.85 10.08 8.42 15.96 1.49 2.47 1.85 17 IG29_AR5 ActiveIntergenicRegion 0 6.61 6.65 27.31 42.85 15.00 7.71 13.07 13.10 5.47 2.73 3.90 5.38 3.81 3.93 4.96 5.64 0.00 10.08 6.91 11.67 0.06 1.29 4.20 18 IG29_SR6 SilentIntergenicRegion 0 11.81 5.68 13.38 22.75 11.26 3.21 6.56 8.93 7.07 3.99 0.94 3.05 7.01 2.33 2.48 3.40 3.10 6.09 2.51 6.01 1.23 2.13 1.43 19 IG29_AR4 ActiveIntergenicRegion 0 14.93 3.53 24.37 16.32 9.74 5.69 9.53 14.24 9.49 11.57 3.00 5.99 12.57 3.00 9.49 6.02 4.83 4.24 6.52 11.01 2.05 0.00 3.48 20 IG29_SR4 SilentIntergenicRegion 0 2.01 5.78 6.38 1.51 0.00 0.00 1.18 0.00 1.24 3.44 1.73 3.42 0.00 10.26 8.70 0.00 5.56 3.70 0.00 0.00 0.00 2.08 0.00 21 IG29_SR2 SilentIntergenicRegion 0 0.00 1.31 8.84 0.00 3.63 1.18 0.00 0.00 1.50 2.46 6.35 0.00 0.34 7.31 14.09 5.94 2.83 5.54 0.00 2.13 0.00 2.08 3.15 22 IG29_AR2 ActiveIntergenicRegion 0 0.00 0.00 9.39 1.59 0.45 0.00 0.00 0.00 0.21 3.44 6.12 0.00 0.00 8.12 14.99 4.95 3.85 3.70 0.00 2.13 0.00 2.08 2.94 23 ER1a ExonRegion 1 12108.64 27308.98 11159.83 7935.22 12255.47 4053.37 3849.48 1570.71 604.53 2117.19 4970.39 47.45 72.55 3011.58 5934.72 4345.31 2707.07 1456.78 5422.85 2116.54 1916.24 3547.60 2245.57 24 E1_Ab NovelBoundary 1 16586.13 37144.50 10740.99 6848.31 13993.30 6534.93 6748.28 1178.50 480.03 1909.27 5333.14 442.49 1011.95 5399.11 10312.90 5016.89 3015.33 1334.22 5402.98 2592.80 2385.35 3186.47 2538.53 25 E1a_E1d KnownJunction 1 101573.11 218513.85 109079.95 60212.65 103914.41 25358.75 25862.74 11898.25 4442.11 14960.55 35167.54 1114.26 739.07 15195.55 28374.76 30902.32 20590.35 9216.99 44460.85 16822.88 13665.40 33048.52 16408.41 26 ER1b ExonRegion 1 57683.35 135226.14 64168.24 39623.42 62464.55 17019.14 16241.41 8153.78 3059.09 10427.11 24952.90 271.73 298.60 13638.35 26641.24 21295.14 14257.04 6887.27 29353.58 11159.84 9894.76 22231.45 11159.10 27 ER1c ExonRegion 0 1.34 0.43 11.54 0.86 1.13 1.55 0.56 1.64 3.72 0.79 8.30 0.75 0.00 2.38 5.74 3.84 6.42 1.65 3.09 1.07 4.08 3.61 2.66 28 E1_Ac KnownBoundary 0 0.00 0.00 15.40 0.00 0.00 0.00 0.00 0.00 2.98 1.21 4.95 0.00 0.00 5.30 11.50 0.00 8.23 1.87 4.80 6.14 2.47 3.06 3.76 29 ER1d ExonRegion 0 1.94 2.85 17.67 1.10 2.19 2.93 4.09 2.17 2.86 2.64 8.30 1.89 0.07 5.48 10.21 3.80 10.66 3.05 9.58 2.01 2.46 2.82 2.92 30 E1_Db KnownBoundary 0 6.15 0.00 21.82 0.00 0.00 5.11 9.58 0.00 4.86 2.47 0.00 6.30 0.00 6.89 14.22 8.72 18.70 7.21 21.18 2.81 2.53 5.82 3.67 31 E1b_E1d KnownJunction 0 3.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 ER1e ExonRegion 0 54.00 122.62 90.86 38.97 58.66 16.61 17.63 11.17 7.08 11.29 38.28 10.56 5.06 21.90 31.49 26.54 21.75 9.83 31.76 12.05 10.85 23.36 13.47 33 E1_Ad KnownBoundary 0 3.33 17.89 54.32 9.72 11.54 0.00 6.05 10.84 5.24 4.14 9.53 13.95 6.17 14.60 9.02 3.33 12.06 0.00 4.14 2.81 0.00 0.00 7.34 34 ER1f ExonRegion 0 10880.09 30312.29 57141.79 29682.68 13533.23 3735.16 3776.25 7138.25 2818.58 9784.03 12615.62 1592.61 556.98 2760.73 5959.96 6591.74 7014.47 3461.64 11412.85 4629.73 5039.20 5972.32 3491.53 35 E1c_E3a KnownJunction 1 126.84 610.68 67089.95 36541.74 866.89 144.12 197.58 7757.12 3316.78 12297.75 27824.05 2915.60 948.15 2368.96 3101.31 1804.48 16470.11 2198.89 5272.25 5700.58 10921.68 2165.52 1203.62 36 ER2a ExonRegion 0 0.00 3.03 7.09 5.86 0.78 0.00 0.38 0.81 0.27 0.92 3.47 1.03 0.24 2.93 3.15 1.93 2.49 1.01 3.42 1.89 1.01 3.13 1.12 37 E2a_E3a KnownJunction 0 0.00 9.21 16.82 9.22 0.00 0.00 0.00 1.97 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 3.93 1.99 0.00 2.62 0.00 0.00 4.27 38 ER3a ExonRegion 0 4214.18 14690.55 30475.38 18843.35 10863.89 4604.32 4661.93 4343.64 1615.48 5412.78 6448.01 1356.36 417.94 3634.57 7899.74 7066.34 3605.86 2779.11 10642.42 3799.32 2081.87 6687.92 3695.43 39 E3_Da KnownBoundary 1 72172.87 136780.77 13603.04 7481.73 3626.32 2491.58 2675.02 1380.50 425.20 1573.63 607.73 2890.24 1459.32 212.43 999.45 532.85 183.82 260.16 940.07 276.57 144.37 497.46 325.57 40 ER3b ExonRegion 1 31045.64 65492.95 1441.81 1144.46 1490.98 1071.12 1168.31 83.89 32.35 81.71 1.04 1182.89 272.82 32.88 222.26 166.37 0.32 82.61 269.82 46.81 11.50 65.55 108.51 41 ER3c ExonRegion 0 862.48 4864.32 33.70 21.81 42.81 6.42 56.93 4.32 1.85 0.57 0.00 8.66 7.04 0.00 0.00 8.92 0.00 3.70 0.00 1.06 0.00 0.00 4.40