Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CUL4B Gene 0 105.62 155.80 113.70 96.61 151.89 106.58 91.63 109.46 135.32 118.29 143.91 194.13 175.07 109.16 71.07 97.81 119.45 41.16 62.34 111.47 87.08 166.26 75.75 2 404115 Transcript 0 0.20 0.08 0.52 2.31 0.25 1.38 0.52 1.31 1.61 0.48 0.18 0.00 0.24 0.25 0.51 0.00 0.11 0.26 1.20 4.05 2.07 0.00 1.99 3 486604 Transcript 0 2.29 1.26 2.31 4.71 2.64 2.61 1.75 0.48 1.19 2.65 0.12 0.77 0.50 0.17 2.44 0.83 0.20 0.99 6.26 2.76 1.50 0.77 1.00 4 336592 Transcript 0 1.55 5.59 6.79 4.19 0.99 11.14 2.91 8.09 2.32 9.13 8.43 0.00 0.00 29.93 10.69 49.03 42.16 11.10 13.17 19.26 9.24 13.28 22.84 5 467641 Transcript 0 0.00 0.00 0.37 0.58 0.27 0.18 0.32 0.00 0.00 0.00 0.09 0.79 1.56 0.54 0.00 0.57 1.02 0.00 0.15 0.64 0.88 0.42 0.31 6 371322 Transcript 0 125.17 147.31 142.10 102.53 155.20 115.74 89.32 112.65 116.97 110.44 108.03 107.08 100.80 82.29 75.14 79.98 79.91 36.63 58.19 93.50 82.36 121.99 85.75 7 371323 Transcript 0 0.33 5.34 8.99 1.88 2.48 2.83 2.27 6.41 11.57 10.73 12.03 6.17 3.16 6.18 1.27 10.15 15.95 3.75 4.98 2.30 0.68 5.72 1.82 8 497616 Transcript 0 20.29 12.79 8.78 8.17 23.53 15.89 14.56 26.40 18.96 11.03 9.05 31.31 31.56 12.78 6.07 9.74 10.06 1.69 5.37 11.52 3.12 23.40 4.08 9 ER1a ExonRegion 0 0.40 0.17 1.03 4.63 0.50 2.77 1.03 0.48 1.92 0.96 0.36 0.00 0.48 0.50 1.03 0.00 0.22 0.52 2.40 5.61 4.15 0.00 3.99 10 E1_Ab KnownBoundary 0 0.00 6.18 0.00 0.00 0.00 2.10 0.00 0.00 1.79 0.00 0.00 0.00 6.82 0.00 0.00 0.00 4.49 0.00 0.00 0.00 2.72 0.00 3.50 11 ER1b ExonRegion 0 0.02 3.14 0.79 6.10 1.16 9.28 0.49 0.00 0.37 3.44 0.00 0.00 0.56 1.07 0.44 0.00 0.92 0.00 2.75 0.92 1.90 0.90 2.26 12 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 ER2a ExonRegion 0 2.67 6.43 1.16 1.43 1.71 3.83 0.15 0.45 0.22 2.15 0.00 0.11 0.00 0.00 0.69 0.00 4.21 1.29 2.63 2.93 1.40 0.03 1.87 14 E2a_E3a KnownJunction 0 0.00 0.00 0.00 1.40 0.00 0.00 0.00 0.00 0.00 2.42 0.00 0.00 0.00 0.00 4.45 0.00 0.00 0.00 9.22 0.00 0.00 0.00 0.00 15 E2a_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.14 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.49 0.00 0.00 0.00 16 ER3a ExonRegion 0 4.58 2.52 4.63 8.02 5.29 5.21 3.50 0.96 2.39 2.89 0.24 1.53 1.01 0.33 0.44 1.65 0.41 1.98 3.29 5.52 2.99 1.55 2.00 17 ER4a ExonRegion 0 3.10 5.13 5.11 0.59 1.98 15.63 5.81 5.66 1.25 5.29 16.86 0.00 0.00 28.90 10.26 63.45 38.61 14.27 22.57 20.10 12.49 18.06 38.35 18 E4a_E6b KnownJunction 0 0.00 6.05 8.46 7.79 0.00 6.64 0.00 10.51 3.39 12.97 0.00 0.00 0.00 30.96 11.13 34.61 45.72 7.92 3.76 18.41 5.99 8.51 7.34 19 ER5a ExonRegion 0 0.00 0.00 1.10 0.00 0.03 0.55 0.00 0.00 0.00 0.00 0.00 2.37 0.00 1.62 0.00 0.00 3.05 0.00 0.00 1.91 2.64 0.06 0.92 20 E5a_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 I5 Intron 0 6.65 4.47 2.29 0.32 3.36 13.81 5.40 3.64 5.49 4.83 26.99 0.68 3.16 23.69 4.90 27.51 34.72 15.57 13.00 20.03 54.27 18.96 58.53 22 I5_AR1 ActiveIntronRegion 1 7.74 5.22 2.46 0.37 3.93 16.15 6.28 4.25 6.42 5.64 31.55 0.79 3.69 27.65 5.69 31.98 40.53 18.20 15.08 23.38 63.36 22.17 67.71 23 E6_Aa NovelBoundary 1 22.23 223.05 39.97 35.59 50.42 90.57 62.23 32.08 71.18 58.91 37.69 72.77 72.88 75.81 39.06 165.51 39.36 106.20 198.31 216.93 133.07 188.42 218.19 24 ER6a ExonRegion 1 16.77 15.57 29.22 15.15 26.44 56.92 31.74 22.40 33.49 27.62 59.84 21.08 36.96 46.20 10.57 48.57 45.95 38.02 38.22 69.85 99.22 50.58 92.43 25 E6_Ab KnownBoundary 1 34.08 34.40 46.75 36.79 57.05 123.11 67.30 48.75 63.05 53.56 98.71 55.22 20.29 70.16 8.90 80.15 76.30 79.22 47.15 113.71 206.21 83.22 94.16 26 ER6b ExonRegion 1 28.17 78.98 49.03 30.91 56.74 72.30 48.64 60.99 115.85 87.05 164.17 108.52 95.19 156.36 37.91 136.59 180.55 120.18 81.19 153.48 264.53 152.34 123.41 27 E6a_E8a KnownJunction 1 52.23 116.36 72.74 66.89 143.21 87.28 142.87 69.66 137.56 123.83 200.47 155.60 256.64 171.88 36.59 138.68 214.77 97.08 91.58 207.41 187.74 227.48 159.80 28 ER7a ExonRegion 0 0.65 10.67 7.29 3.77 4.96 5.67 4.54 8.18 12.64 6.36 7.59 6.04 6.31 9.59 2.53 20.30 15.34 3.18 6.10 4.60 1.36 5.19 3.63 29 E7a_E8a KnownJunction 0 0.00 0.00 10.70 0.00 0.00 0.00 0.00 4.64 10.50 15.10 16.48 6.30 0.00 2.77 0.00 0.00 16.55 4.31 3.86 0.00 0.00 6.25 0.00 30 ER8a ExonRegion 1 25.14 95.33 54.00 53.06 120.87 95.93 93.04 96.12 160.26 127.43 208.77 252.04 273.84 203.49 47.60 175.82 225.77 79.72 91.44 164.64 143.91 252.36 142.60 31 E8a_E9a KnownJunction 1 45.86 134.58 49.76 50.78 175.98 133.90 83.42 80.46 147.28 118.35 239.43 307.90 309.72 154.63 22.37 150.90 145.58 42.41 56.00 143.37 102.49 264.59 75.55 32 ER8b ExonRegion 0 0.00 0.00 0.00 1.75 0.76 0.00 0.95 0.00 0.00 0.00 0.28 0.00 4.69 0.00 0.00 1.70 0.00 0.00 0.46 0.00 0.00 1.19 0.00 33 ER9a ExonRegion 1 34.15 136.76 47.39 50.74 118.68 86.47 81.37 93.90 157.57 119.22 275.87 297.48 252.45 155.29 36.71 127.54 234.46 47.51 62.21 155.30 140.15 247.00 105.61 34 E9a_E10a KnownJunction 1 41.86 179.24 73.36 50.94 138.03 59.34 78.12 133.57 199.25 126.87 264.12 310.30 299.66 141.50 31.40 136.63 265.08 37.85 57.70 157.43 164.33 277.51 108.92 35 ER10a ExonRegion 1 49.31 145.92 61.36 59.42 110.81 78.59 112.39 106.65 176.23 138.10 283.31 341.10 297.15 168.51 35.64 133.62 251.06 57.47 81.14 161.00 151.93 267.55 101.90 36 E10a_E11a KnownJunction 1 66.60 157.80 54.05 68.66 141.85 62.69 140.75 104.20 164.26 154.51 281.60 434.54 462.96 195.60 40.55 192.43 317.81 61.60 111.25 209.52 190.27 274.33 106.36 37 ER11a ExonRegion 1 59.18 129.41 62.53 66.58 117.70 95.73 91.51 105.06 182.48 134.85 275.80 355.37 325.20 196.45 48.85 159.49 250.07 70.89 66.07 176.83 137.91 253.91 121.67 38 E11a_E12a KnownJunction 0 76.01 180.30 57.42 71.85 160.70 155.48 116.15 100.30 172.77 123.54 254.27 337.61 313.13 186.77 73.80 177.82 238.90 48.04 55.91 177.05 113.11 219.40 93.90 39 ER12a ExonRegion 1 54.09 165.62 80.48 66.68 146.58 128.42 106.92 92.06 164.00 134.90 255.77 328.11 316.94 165.97 48.09 154.46 204.27 52.97 86.02 178.55 108.82 246.95 111.03 40 E12a_E13a KnownJunction 0 65.72 183.65 133.61 95.49 199.07 148.32 143.57 99.69 219.59 179.30 282.55 483.31 305.17 213.26 79.36 144.49 208.41 67.53 52.43 207.67 90.38 269.12 127.53 41 ER13a ExonRegion 0 61.36 143.68 88.34 94.83 145.23 128.08 99.34 90.90 198.19 157.52 249.69 396.96 316.26 198.61 63.92 141.74 218.85 43.18 70.04 192.01 110.38 257.99 99.88 42 E13a_E14a KnownJunction 0 118.02 236.87 91.66 91.93 213.75 144.35 126.79 119.98 218.46 177.10 307.24 406.18 425.13 206.13 72.81 135.86 225.90 53.06 92.61 192.14 99.34 325.70 96.97 43 ER14a ExonRegion 0 98.55 204.91 96.94 89.50 205.03 134.47 118.06 112.57 210.22 157.81 270.36 425.64 362.74 152.74 72.12 159.57 231.58 68.48 111.64 201.83 99.92 321.09 125.77 44 E14_Da NovelBoundary 0 80.76 232.92 85.33 65.69 141.17 108.52 78.43 76.89 168.75 121.63 165.25 378.72 234.40 132.32 81.71 119.63 150.72 62.35 85.65 123.81 92.23 268.82 115.07 45 E14b_E15a KnownJunction 0 81.64 272.71 75.25 77.75 127.08 158.20 71.54 105.35 208.10 178.90 235.38 466.65 422.54 228.56 81.34 151.76 195.70 58.03 73.32 178.90 119.35 264.83 136.24 46 ER14b ExonRegion 0 72.74 253.23 85.52 75.82 143.22 136.47 75.61 98.70 201.97 167.69 237.95 461.89 375.70 196.35 84.59 156.43 199.44 69.63 85.00 166.63 120.04 287.42 131.38 47 ER15a ExonRegion 0 71.06 228.93 75.23 74.30 137.29 164.96 106.27 112.86 189.26 159.25 285.70 451.67 299.68 186.25 59.18 118.14 216.69 40.95 77.15 204.76 138.70 247.60 105.81 48 E15a_E16a KnownJunction 1 91.05 232.06 80.04 72.62 175.72 198.24 203.55 113.53 173.44 127.22 252.80 505.51 207.13 199.78 76.64 101.00 185.97 27.57 85.65 218.34 136.34 249.83 105.68 49 ER16a ExonRegion 0 68.56 178.20 74.11 96.30 180.06 140.05 150.18 106.79 205.90 163.15 257.09 425.74 331.53 181.33 70.82 121.01 213.73 55.17 94.28 184.14 143.28 281.94 101.28 50 E16a_E17a KnownJunction 0 114.98 133.33 115.40 127.66 166.72 97.39 129.04 96.65 231.10 185.00 260.01 385.33 458.09 179.29 74.05 168.42 236.84 96.13 80.66 190.92 152.22 309.72 101.75 51 ER17a ExonRegion 0 91.96 228.02 97.28 119.21 206.38 131.56 130.00 116.94 214.89 181.55 264.36 409.53 400.52 189.80 62.29 131.87 192.44 58.32 78.86 196.74 95.11 304.45 109.13 52 E17a_E18a KnownJunction 0 198.11 348.23 113.36 126.96 285.06 169.56 244.75 147.83 221.00 219.19 288.34 451.50 606.62 201.72 72.32 193.20 250.58 81.41 115.30 182.93 116.14 344.74 138.20 53 ER18a ExonRegion 0 97.94 191.83 85.39 113.00 161.84 129.59 144.25 119.69 213.58 171.90 248.68 411.18 460.92 192.42 69.46 161.40 187.81 54.46 73.23 176.01 110.92 311.75 115.17 54 E18a_E19a KnownJunction 0 80.61 184.51 104.40 117.07 205.69 126.23 147.77 153.78 203.12 165.93 271.28 429.29 376.11 236.39 84.55 150.99 191.40 35.61 102.59 156.21 180.20 305.92 123.26 55 ER19a ExonRegion 0 78.20 223.40 91.20 119.88 193.81 147.18 118.23 137.53 174.25 160.73 222.32 455.02 428.27 198.89 76.61 162.61 187.44 48.06 75.70 159.34 176.77 238.46 115.80 56 E19_Da NovelBoundary 0 32.30 53.67 7.07 25.01 54.07 17.83 29.24 38.32 34.95 18.75 31.74 82.68 45.78 14.36 9.64 11.11 11.31 3.65 8.94 22.31 15.38 40.35 0.00 57 E19a_E20b KnownJunction 0 55.86 246.73 99.64 101.49 209.59 159.57 125.38 106.38 153.01 128.24 220.95 421.49 411.01 174.58 86.90 168.93 176.16 46.18 63.91 180.57 171.25 206.85 98.25 58 I19 Intron 0 26.99 21.30 3.33 4.62 18.28 9.19 17.48 9.38 10.06 2.33 22.00 35.83 41.71 10.35 0.93 17.59 25.55 1.68 4.35 7.75 15.03 29.41 2.67 59 I19_SR1 SilentIntronRegion 0 28.81 21.58 3.26 4.68 17.18 12.54 22.17 10.84 10.72 2.00 21.98 35.89 40.09 14.96 0.23 18.07 32.48 2.00 5.55 11.32 18.30 35.59 1.52 60 I19_AR1 ActiveIntronRegion 0 25.75 21.69 3.55 4.74 20.46 5.23 12.16 7.81 9.62 2.87 22.91 37.25 45.53 4.80 1.87 17.71 17.60 1.35 2.99 3.41 11.39 22.66 4.28 61 E20_Aa NovelBoundary 1 62.23 17.83 2.51 33.53 43.04 57.13 19.83 41.20 43.87 14.91 19.48 86.73 66.55 10.07 0.00 27.43 17.86 2.32 21.55 21.60 11.37 40.11 3.24 62 ER20a ExonRegion 1 38.34 25.47 16.89 14.12 46.28 29.61 28.25 46.56 35.41 22.06 16.83 59.96 59.52 24.11 7.98 15.65 11.56 3.38 7.08 18.53 6.21 43.00 6.42 63 E20_Ab KnownBoundary 0 64.75 21.18 33.53 24.31 92.36 36.63 62.36 48.51 40.51 17.92 29.59 86.13 65.42 30.61 9.27 27.09 42.92 10.82 4.71 11.63 14.76 58.54 16.30 64 ER20b ExonRegion 0 111.70 253.38 118.95 122.88 209.72 163.77 142.49 146.19 184.25 157.71 291.73 430.35 421.55 201.37 82.74 210.22 213.35 62.82 90.54 186.93 194.52 255.93 128.21 65 E20a_E21a KnownJunction 0 134.17 287.91 126.64 148.90 257.73 215.22 154.44 146.51 196.90 174.44 294.97 401.83 489.58 217.55 89.62 241.56 176.81 72.46 67.48 215.02 168.03 233.73 125.48 66 ER21a ExonRegion 0 158.82 228.85 140.66 154.86 217.97 156.47 137.53 157.72 210.55 181.37 299.51 370.17 354.36 199.44 108.26 207.80 220.00 69.12 118.71 227.32 181.38 289.05 150.01 67 E21a_E22a KnownJunction 0 175.22 239.56 192.22 197.74 288.46 142.30 138.41 167.62 206.94 211.40 319.45 337.31 415.07 202.96 129.18 152.10 176.25 71.05 129.79 281.11 170.75 261.71 132.23 68 ER22a ExonRegion 0 142.66 211.80 134.33 131.59 193.83 171.43 151.40 114.65 185.60 174.48 236.39 370.32 335.83 195.44 117.50 204.66 228.86 72.09 105.70 207.48 166.23 289.43 145.39 69 E22a_E23a KnownJunction 0 151.06 270.94 112.12 119.23 245.93 187.85 186.41 121.37 206.94 140.97 262.17 400.33 270.76 255.05 94.07 255.49 280.69 77.31 144.10 163.82 159.26 347.68 216.82 70 ER23a ExonRegion 0 172.50 241.84 132.24 117.13 222.57 192.60 166.13 155.59 194.48 168.16 270.92 268.63 326.49 204.35 126.67 228.57 249.44 98.75 160.35 179.18 230.35 274.85 192.27 71 E23a_E24a KnownJunction 0 247.97 305.01 164.75 125.66 185.57 126.86 166.27 172.14 198.26 187.71 289.76 278.04 308.91 246.45 128.19 268.39 283.50 114.74 155.77 180.05 200.96 268.75 222.46 72 ER24a ExonRegion 0 186.47 281.80 177.24 140.77 257.06 195.07 165.06 196.66 242.47 186.51 308.44 355.52 359.83 232.93 125.14 214.27 257.39 97.47 157.21 212.51 217.33 296.68 166.51 73 E24_Da KnownBoundary 0 7.56 0.00 3.19 9.36 4.33 0.00 4.50 14.50 4.98 0.00 0.00 0.00 6.82 0.00 0.00 19.14 7.67 0.00 0.00 5.69 0.00 0.00 0.00 74 E24a_E25a KnownJunction 0 298.05 255.15 197.24 181.06 343.46 245.03 213.13 247.18 266.11 203.32 313.50 418.94 462.15 249.63 234.75 260.44 264.70 84.48 197.37 254.07 163.03 370.65 199.58 75 ER24b ExonRegion 0 2.24 0.12 0.66 2.22 0.78 2.17 0.86 6.23 2.50 0.00 1.26 2.67 3.60 1.45 4.15 3.84 8.56 0.00 3.67 4.50 0.03 3.80 1.74 76 ER25a ExonRegion 0 179.54 215.71 193.16 184.57 285.99 191.65 162.67 206.79 271.05 203.03 293.42 373.27 410.27 183.24 142.39 173.53 243.64 78.32 118.34 216.60 116.61 346.97 133.63 77 E25a_E26a KnownJunction 0 302.35 330.73 175.51 178.33 355.01 275.30 215.96 213.46 231.31 217.37 274.12 324.71 410.69 147.39 138.58 107.07 204.67 43.61 128.47 203.32 89.89 432.37 102.35 78 ER26a ExonRegion 0 209.06 316.43 182.25 184.09 285.87 185.17 171.51 188.13 224.40 193.89 201.25 426.19 386.34 141.60 140.93 117.54 181.37 43.70 91.37 202.95 87.63 322.62 110.48 79 E26_Da KnownBoundary 0 218.78 285.02 221.16 215.89 325.04 179.27 158.94 234.78 232.90 247.45 215.53 502.21 362.48 165.17 125.22 132.96 181.39 35.69 78.50 224.09 95.82 317.07 131.97 80 ER26b ExonRegion 0 159.09 262.08 196.32 199.65 263.12 170.36 158.70 199.10 227.00 210.51 184.35 361.78 235.96 146.19 117.53 124.53 132.02 43.83 95.68 169.39 74.78 322.56 101.15 81 E26_Db KnownBoundary 0 150.69 260.81 173.80 197.61 308.57 262.35 178.37 218.60 233.30 208.48 195.73 343.76 176.29 203.84 109.03 101.34 142.31 33.87 94.87 179.42 83.15 330.84 73.41 82 ER26c ExonRegion 0 233.57 279.05 254.99 189.90 283.97 174.56 146.89 202.89 200.44 193.27 156.21 193.08 164.64 118.37 139.70 111.39 113.87 35.24 78.16 117.14 65.49 193.41 79.07