Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FRMPD3 Gene 0 1.72 10.32 23.54 2.99 8.23 22.66 8.64 29.10 38.39 23.28 2.49 1.20 4.69 1.88 2.28 1.21 89.03 39.70 2.27 19.42 0.68 0.74 0.95 2 276185 Transcript 0 0.38 1.02 0.58 0.00 0.00 1.04 0.78 1.13 1.19 1.10 0.13 0.00 0.66 0.00 0.35 0.00 9.16 5.65 0.00 2.58 0.00 0.00 0.00 3 439554 Transcript 0 1.31 13.19 39.00 3.88 13.25 28.31 8.43 36.39 37.72 26.25 1.35 0.00 1.40 0.22 0.39 0.00 81.59 30.86 0.95 15.58 0.06 0.86 0.24 4 477796 Transcript 0 2.92 4.86 3.81 2.26 3.67 3.38 6.52 6.19 5.04 3.16 1.62 4.43 9.11 5.93 7.40 4.79 16.36 6.91 3.40 9.12 2.48 1.15 2.98 5 ER1a ExonRegion 0 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 6 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 ER2a ExonRegion 0 1.79 0.00 0.00 0.00 0.00 0.25 0.00 0.18 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.30 0.29 0.00 2.09 0.00 0.00 0.00 8 E2_Da NovelBoundary 0 0.00 3.03 17.18 0.00 0.00 2.33 2.08 0.00 6.25 0.00 0.00 0.00 6.82 0.00 0.00 0.00 3.46 8.79 0.00 0.00 0.00 0.00 0.00 9 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER3a ExonRegion 0 0.00 5.10 2.88 0.00 0.00 4.94 3.89 5.48 5.74 5.51 0.65 0.00 3.32 0.00 1.74 0.00 42.30 27.94 0.00 10.80 0.00 0.00 0.00 11 E3_Ab KnownBoundary 0 0.00 13.81 7.48 0.00 0.00 5.11 10.69 11.58 11.92 10.34 4.32 0.00 6.82 0.00 0.00 0.00 65.17 44.31 0.00 12.27 0.00 0.00 0.00 12 ER3b ExonRegion 0 0.00 2.37 8.28 0.00 0.92 4.58 3.34 10.01 13.64 11.25 1.72 0.00 4.17 0.00 1.06 0.00 61.18 21.27 0.00 9.95 0.00 0.00 0.00 13 E3a_E4a KnownJunction 0 0.00 2.89 5.03 0.00 4.33 2.78 4.37 8.83 9.06 5.78 0.00 0.00 0.00 0.00 0.00 0.00 80.41 16.54 0.00 12.27 0.00 0.00 0.00 14 ER4a ExonRegion 0 2.10 8.92 2.64 0.74 2.44 12.30 7.57 8.76 19.45 15.30 3.30 0.00 6.19 0.00 1.10 0.00 81.21 27.82 0.00 15.51 0.00 0.00 0.00 15 E4a_E5a KnownJunction 0 0.00 6.58 0.00 1.70 11.04 8.40 7.99 4.81 34.03 13.32 7.11 0.00 6.66 0.00 0.00 0.00 83.40 35.44 0.00 9.65 0.00 0.00 0.00 16 E4a_E6b NovelJunction 0 0.00 3.35 1.33 0.00 3.82 0.00 0.00 2.55 6.66 1.24 0.00 0.00 0.00 4.77 0.00 0.00 30.20 9.41 0.00 12.59 0.00 0.00 0.00 17 ER5a ExonRegion 0 0.00 6.01 0.96 0.59 6.98 10.64 8.29 5.60 34.74 19.07 3.32 0.00 5.61 0.00 2.08 0.00 107.14 27.88 0.00 11.15 0.00 0.00 0.00 18 E5_Da NovelBoundary 0 0.00 0.00 1.27 0.00 4.24 0.00 2.12 2.05 6.31 3.14 0.00 0.00 0.00 0.00 0.00 0.00 9.54 15.30 0.00 3.26 0.00 0.00 0.00 19 E5a_E6b KnownJunction 0 0.00 5.53 1.83 0.00 12.22 21.12 18.15 4.64 27.52 22.97 0.00 0.00 6.82 0.00 0.00 0.00 92.01 16.58 0.00 17.51 0.00 0.00 0.00 20 ER6a ExonRegion 0 5.22 6.38 4.80 4.21 5.56 3.89 8.29 6.71 5.48 3.57 3.24 8.86 17.36 11.87 14.79 9.58 10.55 5.29 5.63 10.52 4.96 2.30 5.96 21 E6_Ab KnownBoundary 0 0.00 0.00 1.83 0.00 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 ER6b ExonRegion 0 0.00 3.38 4.58 1.94 1.88 15.66 9.84 12.00 29.63 18.53 1.84 0.00 2.71 0.70 0.00 0.00 65.32 29.60 0.00 21.73 0.00 1.02 0.00 23 E6a_E7a KnownJunction 0 0.00 5.39 1.18 0.00 3.82 13.51 1.99 13.68 22.28 8.81 0.00 0.00 0.00 0.00 0.00 0.00 8.23 33.08 0.00 25.44 0.00 0.00 0.00 24 I6 Intron 0 0.86 3.29 5.56 0.73 4.23 3.15 6.56 5.74 5.23 4.42 0.59 0.49 1.46 0.12 0.35 0.00 37.75 10.22 0.60 7.02 0.00 0.07 0.05 25 I6_SR1 SilentIntronRegion 0 0.46 3.41 2.49 0.77 2.62 2.50 5.69 5.77 4.96 5.48 0.22 0.19 1.47 0.15 0.45 0.00 28.35 10.64 0.52 5.78 0.00 0.00 0.00 26 I6_AR1 ActiveIntronRegion 0 1.45 2.36 7.04 0.46 3.65 2.08 7.23 6.09 7.22 4.49 1.07 0.00 1.75 0.49 0.47 0.00 62.72 14.42 0.00 8.24 0.00 0.47 0.00 27 I6_SR2 SilentIntronRegion 0 0.94 3.48 6.94 0.77 5.34 3.84 6.88 5.63 4.84 3.79 0.67 0.79 1.37 0.00 0.26 0.00 36.31 8.82 0.81 7.42 0.00 0.00 0.09 28 E7_Aa NovelBoundary 0 0.00 0.00 16.00 2.06 4.24 8.01 20.36 11.71 8.33 9.43 0.00 0.00 6.82 0.00 0.00 0.00 66.57 9.04 0.00 11.51 0.00 0.00 0.00 29 ER7a ExonRegion 0 0.00 12.71 16.79 1.70 5.77 38.51 14.97 26.52 46.28 20.13 0.43 0.00 6.51 3.08 0.00 0.00 124.30 48.14 1.50 33.33 0.00 0.00 0.00 30 E7a_E8a KnownJunction 0 0.00 11.91 30.45 2.80 0.00 29.98 9.19 30.31 54.37 28.47 2.53 0.00 6.82 2.47 0.00 0.00 148.67 45.18 0.00 41.61 0.00 0.00 0.00 31 ER8a ExonRegion 0 1.59 14.33 17.32 2.06 10.18 23.20 14.82 28.30 50.74 30.98 2.46 0.00 7.28 1.17 0.92 0.00 184.55 56.41 2.46 38.33 0.00 0.00 1.13 32 E8a_E9a KnownJunction 0 0.00 15.33 23.27 1.56 22.16 23.17 32.86 35.57 67.36 28.47 6.79 0.00 6.82 0.00 0.00 0.00 188.41 77.77 0.00 42.38 0.00 0.00 0.00 33 ER9a ExonRegion 0 0.05 12.29 15.62 2.86 9.34 27.87 10.17 21.97 52.67 30.92 5.54 1.52 4.89 1.06 1.02 0.00 174.31 73.08 5.71 30.41 0.00 1.77 0.00 34 E9_Da KnownBoundary 0 0.00 6.31 0.00 0.00 0.00 6.30 4.33 1.68 4.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.88 10.99 0.00 6.52 0.00 0.00 0.00 35 E9a_E10a KnownJunction 0 0.00 9.54 8.81 1.86 19.02 22.88 6.05 5.63 37.21 18.48 2.68 0.00 6.49 4.94 0.00 0.00 137.17 52.36 3.95 19.43 0.00 0.00 0.00 36 ER9b ExonRegion 0 0.62 3.33 2.82 0.30 1.77 2.88 4.76 5.66 4.61 2.76 0.00 0.00 0.85 0.00 0.00 0.00 22.16 8.52 1.17 7.71 0.00 0.00 0.00 37 I9 Intron 0 1.10 3.41 4.09 1.22 2.03 2.56 3.70 4.63 7.50 2.46 0.15 0.00 0.96 0.05 0.00 0.00 22.41 7.85 0.38 5.01 0.00 0.00 0.00 38 I9_SR1 SilentIntronRegion 0 1.10 3.41 4.09 1.22 2.03 2.57 3.71 4.63 7.50 2.46 0.15 0.00 0.96 0.05 0.00 0.00 22.42 7.86 0.38 5.02 0.00 0.00 0.00 39 ER10a ExonRegion 0 0.00 11.53 15.70 3.35 13.63 35.89 9.76 17.54 47.94 24.23 3.29 0.22 1.13 1.07 0.89 0.00 151.14 53.26 6.51 29.38 0.00 1.11 0.00 40 E10a_E11a KnownJunction 0 0.00 6.12 6.65 1.30 4.33 34.47 13.91 15.48 48.73 28.96 0.00 5.70 0.00 0.00 0.00 0.00 141.28 42.61 14.40 29.59 0.00 3.12 4.35 41 ER11a ExonRegion 0 1.35 12.28 14.64 2.89 8.05 27.78 9.65 21.59 42.81 27.28 3.93 1.19 1.55 1.61 0.00 0.00 125.54 44.04 5.97 25.05 0.00 0.48 0.00 42 E11a_E12a KnownJunction 0 3.78 11.77 4.11 1.76 0.00 26.52 0.00 20.09 36.57 36.64 5.05 0.00 0.00 0.00 0.00 0.00 129.22 18.41 4.71 19.62 0.00 0.00 0.00 43 I11 Intron 0 1.22 5.15 4.38 0.76 5.43 5.21 7.56 7.05 7.90 4.56 0.07 0.00 0.63 0.00 0.07 0.00 22.54 12.63 0.75 8.41 0.00 0.00 0.00 44 I11_SR1 SilentIntronRegion 0 1.26 4.12 4.79 0.48 6.22 3.72 8.29 7.53 7.36 4.08 0.00 0.00 0.46 0.00 0.12 0.00 22.64 14.19 0.57 8.25 0.00 0.00 0.00 45 I11_AR1 ActiveIntronRegion 0 1.16 5.87 4.11 1.42 2.62 7.67 6.96 5.93 8.78 6.24 0.00 0.00 0.00 0.00 0.00 0.00 22.42 11.44 0.45 8.69 0.00 0.00 0.00 46 I11_SR2 SilentIntronRegion 0 1.16 7.31 3.55 0.74 6.55 6.56 6.22 7.07 8.47 3.96 0.34 0.00 1.91 0.00 0.00 0.00 22.51 9.65 1.66 8.60 0.00 0.00 0.00 47 E12_Aa NovelBoundary 0 0.00 9.14 6.65 0.00 0.00 14.93 1.72 10.72 15.71 7.20 0.00 0.00 0.00 0.00 0.00 0.00 13.18 13.85 0.00 11.44 0.00 0.00 0.00 48 ER12a ExonRegion 0 2.89 7.80 10.08 2.36 13.82 26.83 12.83 16.31 49.84 29.34 4.66 0.00 2.19 0.45 0.00 0.00 124.37 25.46 5.52 25.34 0.00 0.00 2.97 49 E12a_E13a KnownJunction 0 0.00 11.77 12.33 3.93 3.57 54.46 10.42 8.63 51.39 28.96 2.53 0.00 0.00 2.47 0.00 0.00 120.71 30.22 4.80 12.08 0.00 0.00 3.59 50 I12 Intron 0 1.02 6.60 7.03 1.22 3.75 4.92 5.31 11.57 9.22 8.15 0.46 0.00 0.31 0.00 0.00 0.00 21.04 13.51 0.89 9.13 0.18 0.00 0.00 51 I12_SR1 SilentIntronRegion 0 1.02 6.61 7.04 1.22 3.76 4.93 5.32 11.58 9.24 8.17 0.47 0.00 0.31 0.00 0.00 0.00 21.08 13.53 0.90 9.15 0.18 0.00 0.00 52 E13_Aa NovelBoundary 0 3.48 5.92 9.64 0.00 7.89 2.90 5.96 15.81 8.16 12.28 2.68 0.00 0.00 0.00 0.00 0.00 15.52 13.68 0.00 11.44 0.00 0.00 0.00 53 ER13a ExonRegion 0 0.78 12.05 22.10 4.52 11.77 26.68 11.44 28.86 57.47 34.22 4.24 0.00 2.45 0.54 0.00 0.00 143.28 55.50 5.93 36.19 0.00 0.00 0.85 54 E13a_E14a KnownJunction 0 3.41 9.34 27.59 6.99 12.65 14.82 12.06 33.85 60.18 51.25 5.16 0.00 0.00 0.00 0.00 0.00 138.20 35.44 0.00 25.31 0.00 0.00 3.50 55 ER14a ExonRegion 0 1.30 15.17 21.14 2.93 12.09 24.04 8.61 30.29 46.57 33.38 1.99 0.00 6.99 0.46 0.00 0.00 114.10 34.88 1.12 30.42 0.00 0.00 0.20 56 E14a_E15a KnownJunction 0 0.00 15.06 16.32 3.63 15.45 24.59 6.58 29.24 40.28 34.17 0.00 0.00 0.00 0.00 0.00 0.00 123.70 44.48 0.00 36.75 0.00 0.00 0.00 57 ER15a ExonRegion 0 2.36 13.60 23.63 3.78 10.50 29.49 11.50 43.60 56.71 32.22 3.52 0.44 8.73 0.91 0.00 0.00 146.84 62.12 2.37 31.05 0.00 0.52 0.18 58 E15a_E16a KnownJunction 0 3.41 9.08 28.15 4.06 3.48 21.01 3.75 50.07 44.01 23.80 7.84 0.00 0.00 0.00 0.00 0.00 102.66 51.24 0.00 38.61 0.00 0.00 0.00 59 ER16a ExonRegion 0 1.17 11.01 31.19 2.77 7.23 29.24 8.60 39.59 53.62 31.01 3.02 0.00 2.11 0.36 0.75 0.00 109.55 58.58 1.69 21.74 0.11 0.51 0.20 60 E16_Da KnownBoundary 0 3.19 44.01 90.09 8.99 33.62 103.41 23.45 73.11 88.11 72.34 2.58 0.00 13.47 0.00 0.00 0.00 265.08 129.46 0.00 49.92 0.00 6.25 0.00 61 ER16b ExonRegion 0 1.31 13.19 39.00 3.88 13.25 28.31 8.43 36.39 37.72 26.25 1.35 0.00 1.40 0.22 0.39 0.00 81.59 30.86 0.95 15.58 0.06 0.86 0.24