Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RBM41 Gene 0 9.71 14.57 12.26 14.87 15.49 10.75 14.04 9.89 18.55 12.60 19.91 31.96 18.68 21.09 12.85 21.34 19.57 12.11 7.35 26.79 10.40 16.52 13.65 2 495517 Transcript 0 8.50 13.15 7.10 12.98 14.90 11.40 15.11 7.85 15.10 9.99 13.15 19.77 21.14 13.58 7.81 18.80 13.14 7.25 8.70 24.45 8.18 14.69 12.59 3 372482 Transcript 0 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.73 0.00 0.00 4 203616 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 372479 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 372487 Transcript 0 5.98 3.44 0.61 4.05 3.52 5.63 1.38 4.25 3.40 2.87 1.35 3.18 3.84 4.59 2.23 4.65 0.06 0.00 0.00 0.00 1.72 1.64 4.42 7 485676 Transcript 0 10.73 8.39 4.83 8.10 10.41 9.67 10.53 4.20 14.79 5.91 24.24 5.35 4.60 11.13 5.38 23.83 18.92 11.20 10.03 20.52 9.55 9.07 14.63 8 471079 Transcript 0 1.54 0.89 2.39 2.17 1.82 0.07 2.05 1.16 1.26 2.15 0.60 3.05 3.73 1.15 1.74 1.39 0.96 0.27 0.15 4.20 0.30 0.20 0.00 9 434854 Transcript 0 0.00 3.35 12.45 5.73 4.16 2.90 0.00 0.00 4.46 4.70 0.00 6.30 0.00 2.41 0.00 0.00 0.00 2.07 4.80 5.82 0.00 0.00 0.00 10 475556 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.58 2.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 474499 Transcript 0 6.74 0.00 0.00 2.93 0.00 0.00 0.00 0.00 3.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 IG12 Intergenic 0 1.21 1.49 1.75 4.24 3.63 4.85 6.72 1.52 5.60 2.74 8.98 12.70 1.56 0.96 0.97 0.16 1.21 2.48 0.28 3.15 0.04 0.18 0.15 13 IG12_SR2 SilentIntergenicRegion 0 1.09 1.51 1.58 4.68 3.52 5.32 7.47 1.54 5.76 2.78 9.23 13.45 1.42 0.89 0.86 0.18 1.15 2.61 0.26 2.93 0.05 0.21 0.12 14 IG12_AR2 ActiveIntergenicRegion 0 2.33 1.59 3.07 2.24 5.16 2.68 2.96 1.25 5.36 2.59 8.50 9.20 2.36 1.30 1.92 0.00 1.36 1.66 0.44 4.64 0.00 0.00 0.40 15 ER1a ExonRegion 0 9.42 10.68 2.70 6.34 13.11 16.87 15.16 1.64 4.51 2.81 22.42 0.00 4.69 12.59 2.18 31.50 17.16 12.29 12.42 23.72 18.40 15.63 22.47 16 ER1b ExonRegion 1 22.22 26.44 9.50 14.65 29.43 39.89 44.68 5.19 9.88 5.73 53.15 0.00 9.38 42.23 10.88 66.87 42.91 36.03 31.85 63.30 55.09 39.59 61.67 17 ER1c ExonRegion 1 51.29 60.95 20.69 25.65 52.10 65.80 64.95 11.59 26.55 17.61 111.31 8.15 20.83 68.74 36.18 152.02 95.82 79.62 58.74 129.72 89.70 70.72 115.39 18 E1a_E2b KnownJunction 1 98.61 107.55 40.51 54.51 79.12 89.78 91.81 20.13 50.64 32.48 147.93 18.91 26.30 78.46 73.06 212.25 155.77 125.48 78.68 201.40 106.26 95.65 172.43 19 ER2a ExonRegion 0 28.22 28.47 11.03 12.27 24.97 29.34 28.69 6.34 15.23 10.32 52.19 5.77 6.25 23.82 18.37 80.25 57.22 36.34 29.73 63.12 38.20 34.03 53.84 20 ER2b ExonRegion 0 31.58 29.70 28.03 22.95 20.37 26.73 23.24 21.74 50.12 30.95 80.32 25.98 24.14 26.36 16.73 71.00 93.05 57.84 23.84 59.56 47.63 28.83 41.59 21 E2a_E3a KnownJunction 0 6.52 0.00 3.67 4.06 4.07 2.90 5.30 6.41 21.67 5.83 19.69 5.40 7.30 2.47 0.00 0.00 12.34 0.00 0.00 5.75 0.00 0.00 0.00 22 E2a_E4a KnownJunction 1 7.56 20.98 19.63 23.87 0.00 10.45 10.64 17.13 47.48 35.59 145.72 54.17 8.28 34.55 29.92 19.40 150.44 19.11 16.47 79.96 103.79 16.84 14.60 23 ER3a ExonRegion 0 5.29 1.73 2.09 8.97 4.78 6.46 5.93 4.05 13.26 3.31 13.51 3.91 4.84 5.93 3.15 6.45 6.11 3.38 2.10 10.03 0.00 2.24 4.69 24 E3a_E4a KnownJunction 0 2.89 3.35 2.54 7.09 7.81 0.00 2.21 0.00 9.00 4.16 11.58 6.30 0.00 12.30 0.00 8.63 0.00 5.10 8.28 3.20 0.00 0.00 0.00 25 ER4a ExonRegion 0 13.72 27.52 42.22 51.35 40.12 42.09 40.94 30.32 68.92 35.63 84.20 71.94 37.86 74.98 35.13 105.13 67.08 76.86 32.46 106.75 43.93 64.37 69.72 26 E4a_E5a KnownJunction 1 9.56 55.85 33.62 67.22 70.88 77.51 76.62 45.35 65.68 39.06 71.39 131.29 21.26 95.77 35.48 98.44 81.63 53.93 42.64 87.18 55.41 69.81 71.02 27 ER5a ExonRegion 0 23.12 50.78 39.09 56.47 29.95 32.55 27.06 38.01 62.70 39.40 61.14 118.58 46.85 92.86 44.28 67.72 78.61 57.14 31.39 86.57 48.70 48.89 42.37 28 E5_Ab KnownBoundary 0 19.86 41.24 39.92 54.41 25.81 22.54 25.66 25.30 56.22 39.62 99.66 90.78 45.78 84.94 30.90 70.67 96.31 32.91 22.87 72.61 43.74 31.96 51.73 29 ER5b ExonRegion 0 37.06 36.35 36.00 43.09 36.28 33.67 26.79 33.50 53.34 43.91 87.97 120.50 53.75 94.98 36.86 88.20 75.24 52.81 23.73 68.13 42.69 39.73 48.05 30 E5_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.08 0.00 0.00 2.68 6.00 0.00 0.00 0.00 4.10 0.00 0.00 0.00 2.68 2.66 0.00 0.00 31 E5a_E6a KnownJunction 0 49.19 25.46 38.59 42.82 37.27 59.23 15.19 36.39 68.87 43.97 42.85 31.51 13.64 32.49 14.09 27.09 30.48 44.06 11.67 40.33 17.17 13.96 19.72 32 E5a_E8a KnownJunction 0 16.67 5.53 2.84 3.43 23.68 0.00 8.35 6.37 4.69 1.16 31.80 54.77 40.09 85.29 44.01 60.58 51.33 19.57 10.45 18.73 19.58 16.66 41.23 33 ER5c ExonRegion 0 1.54 0.89 2.39 2.17 1.82 0.07 2.05 1.16 1.26 2.15 0.60 3.05 3.73 1.15 1.74 1.39 0.96 0.27 0.15 4.20 0.30 0.20 0.00 34 E5_Db NovelBoundary 1 3.78 0.00 2.37 8.36 0.00 0.00 6.23 0.00 0.00 3.09 0.00 6.30 20.45 0.00 0.00 4.27 0.00 0.00 0.00 8.31 0.00 0.00 4.18 35 ER6a ExonRegion 1 29.10 28.84 45.00 50.54 32.29 31.91 34.17 23.33 52.82 36.22 36.64 83.40 32.96 44.71 11.44 33.81 33.24 30.08 26.37 64.80 22.43 19.21 18.56 36 E6a_E8a KnownJunction 0 18.15 28.35 34.92 45.55 31.07 10.96 31.58 18.15 25.64 20.66 33.75 85.83 40.74 35.79 15.95 33.75 22.25 19.65 33.79 53.43 25.27 22.23 28.51 37 E6a_E9b KnownJunction 0 0.00 3.35 12.45 5.73 4.16 2.90 0.00 0.00 4.46 4.70 0.00 6.30 0.00 2.41 0.00 0.00 0.00 2.07 4.80 5.82 0.00 0.00 0.00 38 ER6b ExonRegion 0 0.00 0.00 2.45 0.00 0.00 0.00 0.00 0.00 0.00 1.15 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.42 1.47 0.00 0.00 39 ER7a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 E8_Aa NovelBoundary 1 0.00 14.27 5.47 5.93 4.33 4.54 8.79 17.29 17.19 8.41 0.00 18.16 25.97 0.00 14.96 0.00 14.31 7.09 3.86 10.35 2.53 0.00 0.00 41 ER8a ExonRegion 0 17.56 45.38 23.88 28.48 34.05 22.32 22.26 29.75 33.12 28.86 79.29 107.99 51.10 77.14 30.34 64.57 61.11 32.70 11.38 57.85 39.44 32.60 45.11 42 E8_Da KnownBoundary 0 27.19 51.64 20.19 15.22 38.37 29.47 27.34 32.86 19.53 23.24 83.60 126.49 53.89 43.26 8.90 58.62 38.99 26.12 3.95 40.27 41.70 40.66 31.16 43 E8a_E8b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.58 2.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44 E8a_E9a KnownJunction 0 0.00 0.00 0.00 1.63 0.00 0.00 0.00 0.00 8.28 0.00 0.00 0.00 0.00 0.00 4.45 0.00 0.00 1.95 0.00 0.00 0.00 0.00 0.00 45 E8a_E9b NovelJunction 0 0.00 3.09 1.74 6.63 3.40 0.00 0.00 1.68 10.97 0.00 9.63 0.00 0.00 4.83 0.00 8.12 8.42 2.11 3.58 9.40 5.31 6.25 0.00 46 ER8b ExonRegion 0 21.75 33.59 26.89 29.07 32.19 20.81 20.60 27.71 24.08 24.57 57.10 116.66 45.83 74.88 34.40 53.72 66.30 35.88 15.55 67.20 39.88 30.89 45.48 47 E8_Ab KnownBoundary 1 46.45 50.85 24.95 28.20 28.52 7.55 10.78 30.23 20.25 27.37 39.80 178.86 39.45 58.63 43.51 46.14 52.17 20.89 20.52 62.83 31.75 22.66 26.80 48 ER8c ExonRegion 1 49.27 60.19 25.32 27.84 42.07 17.09 16.62 17.65 22.65 25.94 26.32 87.23 27.84 43.78 40.99 46.67 39.68 22.02 14.91 40.29 27.19 36.44 21.93 49 E8_Db KnownBoundary 1 52.16 87.16 23.68 39.16 58.15 23.79 29.10 8.83 28.62 20.50 29.53 97.38 19.48 49.27 57.48 54.69 36.84 19.19 4.24 42.44 26.93 24.43 29.79 50 ER8d ExonRegion 0 29.58 60.42 24.68 24.02 48.04 14.91 40.47 13.33 22.53 21.26 51.20 71.05 23.09 68.66 29.66 41.97 71.30 22.56 12.21 63.81 22.77 39.75 37.49 51 E8_Dc NovelBoundary 0 3.56 28.35 33.71 31.73 54.24 33.22 43.41 24.19 18.89 15.79 20.16 26.56 16.40 5.24 0.00 26.49 15.90 12.60 13.08 69.48 2.90 8.14 19.72 52 E8c_E9b KnownJunction 0 20.15 21.77 8.01 7.59 23.51 5.79 15.28 7.23 2.23 11.20 39.69 55.82 12.50 78.11 34.37 43.41 33.57 11.73 4.42 8.37 8.03 24.92 20.23 53 I8 Intron 0 6.11 10.83 9.72 15.81 11.16 4.19 9.38 10.87 13.63 9.01 6.07 18.72 19.73 5.11 4.72 9.70 7.87 8.55 6.80 22.07 2.54 7.27 7.30 54 I8_SR1 SilentIntronRegion 0 9.68 18.34 16.53 28.84 17.43 4.11 14.95 17.29 25.06 13.63 14.49 32.46 33.62 8.42 8.77 14.75 14.46 21.55 12.09 35.91 4.07 15.61 14.54 55 I8_AR2 ActiveIntronRegion 0 12.60 20.56 19.28 25.78 19.84 7.21 10.56 22.28 20.05 17.66 4.78 21.96 21.29 7.02 7.32 10.35 5.93 5.89 7.87 22.71 3.71 8.43 5.28 56 E9_Aa NovelBoundary 0 2.89 13.02 11.89 17.61 8.23 2.78 19.03 17.79 20.08 13.05 7.37 32.71 0.00 2.41 6.06 37.00 14.87 4.48 11.39 11.57 11.31 2.39 19.04 57 ER9a ExonRegion 0 6.85 25.08 11.00 11.28 12.05 3.32 13.88 16.87 16.66 12.98 14.88 20.45 4.15 6.63 6.96 15.64 4.99 7.07 6.49 20.15 5.12 5.32 9.30 58 E9_Da KnownBoundary 0 7.56 9.08 9.31 17.95 11.54 7.27 6.32 10.80 17.45 8.89 15.58 6.30 6.66 2.35 14.34 12.65 0.00 14.80 8.38 12.14 5.44 2.51 8.37 59 ER9b ExonRegion 0 11.28 19.23 9.66 10.08 14.52 8.48 19.74 7.28 13.88 8.45 10.61 15.89 10.62 10.58 22.44 22.19 15.27 12.76 10.93 28.14 11.45 7.47 11.71 60 E9_Ab KnownBoundary 0 22.67 21.71 5.91 20.51 20.46 7.50 21.46 7.06 11.60 1.50 9.42 0.00 7.79 5.42 4.70 13.07 18.05 18.82 23.15 39.05 6.24 0.00 8.62 61 ER9c ExonRegion 0 21.03 30.11 28.57 38.78 43.92 18.80 27.95 16.10 40.65 23.91 60.61 77.08 23.35 69.17 44.18 54.56 50.12 30.95 20.74 67.28 28.79 43.32 38.46 62 E9_Db KnownBoundary 0 24.82 37.03 41.57 37.72 27.59 26.29 41.69 25.96 54.83 21.54 72.86 92.58 31.49 80.94 44.26 61.18 59.00 35.28 22.12 71.72 12.17 40.90 27.83 63 ER9d ExonRegion 0 21.42 31.74 33.46 33.49 35.27 24.23 29.93 17.49 48.92 17.17 70.64 90.66 48.04 71.51 36.66 65.84 67.02 26.43 22.10 60.73 17.16 31.44 31.15 64 E9_Dc NovelBoundary 0 3.11 11.84 11.89 29.37 12.14 2.90 8.88 8.01 16.64 5.67 0.00 12.60 0.00 2.47 0.00 15.38 13.28 18.61 16.75 40.46 9.45 0.00 4.27 65 E9c_E10a KnownJunction 0 19.71 32.17 33.17 35.86 75.98 28.17 28.22 11.91 52.66 20.25 53.33 86.43 47.40 70.16 39.56 46.91 47.03 16.58 4.52 32.47 27.06 29.76 24.07 66 ER9e ExonRegion 0 18.18 27.82 31.64 33.82 59.35 20.42 23.89 12.18 53.05 18.87 64.75 101.15 39.23 52.49 33.36 55.39 58.37 21.67 11.58 43.91 26.95 21.59 24.43 67 I9 Intron 0 4.79 10.68 12.95 14.41 8.21 4.01 7.82 8.30 9.60 6.68 6.08 10.73 10.93 3.33 2.11 6.72 5.06 5.47 3.66 30.59 1.86 4.31 3.94 68 I9_SR1 SilentIntronRegion 0 5.14 12.66 15.71 17.28 8.44 4.35 6.72 9.27 12.04 8.35 7.19 11.38 12.65 3.88 2.83 8.42 6.32 6.12 4.57 33.89 2.39 4.12 3.90 69 I9_AR1 ActiveIntronRegion 0 4.41 7.68 8.94 10.17 7.74 3.72 9.75 6.97 5.46 3.88 4.44 10.00 8.47 2.65 0.96 3.87 3.19 4.67 2.32 26.62 1.04 5.01 4.37 70 E10_Aa NovelBoundary 1 3.78 11.77 7.13 15.12 7.89 2.84 14.26 0.00 7.87 4.54 5.32 25.06 34.74 3.00 0.00 4.10 8.42 0.00 0.00 12.40 0.00 2.51 0.00 71 ER10a ExonRegion 0 26.58 34.73 39.03 38.57 49.93 23.04 40.06 17.81 50.95 31.33 60.16 109.84 51.69 66.09 34.39 40.43 57.53 14.67 7.06 53.35 16.70 60.44 25.00 72 E10_Da KnownBoundary 0 20.37 19.47 43.55 33.46 54.41 5.56 33.96 6.49 72.92 22.21 59.23 76.67 52.27 55.74 17.55 40.76 49.46 22.63 4.52 62.26 8.83 38.21 16.05 73 E10a_E10b KnownJunction 0 6.74 0.00 0.00 2.93 0.00 0.00 0.00 0.00 3.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74 E10a_E11a KnownJunction 0 10.96 6.71 1.15 7.52 6.79 10.05 2.16 7.97 6.51 5.21 2.42 5.40 6.66 8.89 4.45 8.72 0.00 0.00 0.00 0.00 3.15 2.76 8.54 75 ER10b ExonRegion 0 14.94 17.15 30.81 34.48 35.33 22.80 25.28 19.51 48.44 33.63 28.24 82.52 50.50 37.06 26.91 22.34 25.32 8.00 4.37 49.28 7.31 54.10 14.73 76 E10_Db KnownBoundary 1 27.04 35.26 16.91 52.94 44.57 38.56 37.10 28.96 45.34 46.52 24.74 109.69 100.81 34.61 19.66 31.44 29.17 4.15 13.08 57.59 2.47 93.32 15.62 77 ER10c ExonRegion 1 10.28 21.85 16.05 35.24 31.86 20.24 24.91 22.50 42.03 28.71 19.58 63.17 69.26 31.15 6.64 21.51 20.11 3.95 10.98 45.95 2.86 35.68 16.19 78 E10_Ab KnownBoundary 0 5.78 3.35 6.95 18.95 7.64 5.45 17.62 15.16 22.45 10.34 12.74 38.71 33.93 27.37 5.19 7.43 0.00 5.35 8.56 38.99 0.00 15.98 11.44 79 ER10d ExonRegion 0 7.02 13.84 4.32 7.21 16.76 16.78 21.88 4.91 11.84 4.84 3.16 15.92 25.13 7.43 2.95 9.81 2.89 2.90 3.11 10.96 0.00 11.56 7.03 80 E10_Dc KnownBoundary 0 27.04 25.85 1.48 6.26 8.06 2.67 23.49 2.55 3.33 2.39 5.11 0.00 8.28 2.06 0.00 3.85 4.77 0.00 0.00 2.62 0.00 0.00 0.00 81 ER10e ExonRegion 0 3.03 0.83 0.00 0.25 0.10 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 82 E10_Dd NovelBoundary 1 58.90 66.90 55.53 118.90 62.39 23.28 47.17 65.10 85.07 42.17 30.59 123.34 73.86 37.55 10.14 20.17 3.55 11.98 4.80 77.66 2.53 64.66 10.59 83 E11_Aa NovelBoundary 1 9.85 32.56 40.39 53.84 99.24 41.51 35.07 31.71 47.16 29.20 19.74 99.48 136.68 16.72 4.45 0.00 8.60 3.40 13.74 36.43 0.00 19.41 8.11 84 ER11a ExonRegion 0 0.99 0.17 0.06 0.58 0.24 1.20 0.59 0.53 0.29 0.54 0.27 0.95 1.03 0.29 0.01 0.58 0.12 0.00 0.00 0.00 0.29 0.53 0.31