Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 UBE2A Gene 0 147.46 95.16 153.60 126.87 138.85 93.18 111.88 105.10 84.77 86.81 163.92 216.59 138.53 206.16 190.98 156.29 140.33 62.95 51.12 104.07 73.50 222.16 103.24 2 371558 Transcript 0 17.56 14.84 5.30 0.96 5.42 26.57 26.59 4.11 3.84 3.10 27.64 6.90 4.44 19.36 27.37 25.70 18.38 8.84 4.74 7.53 19.54 17.06 22.46 3 404672 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 346330 Transcript 0 0.00 0.00 5.23 2.00 0.00 0.00 0.00 6.65 7.84 1.67 17.43 6.30 0.00 24.37 8.90 7.18 18.61 16.13 4.24 11.12 5.31 20.45 24.24 5 469205 Transcript 1 6.22 11.15 11.99 10.04 9.99 13.96 16.71 14.26 19.80 9.20 24.44 19.20 10.57 28.94 10.05 38.01 27.84 19.62 7.12 31.40 21.14 25.31 25.42 6 371569 Transcript 1 62.26 58.61 68.71 66.69 68.12 42.55 50.99 47.04 43.50 35.47 24.17 88.59 67.59 31.66 25.66 31.17 18.86 11.00 15.39 34.43 6.16 46.10 21.03 7 ER1a ExonRegion 0 17.56 14.84 5.30 0.96 5.42 26.57 26.59 4.11 3.84 3.10 27.64 6.90 4.44 19.36 27.37 25.70 18.38 8.84 4.74 7.53 19.54 17.06 22.46 8 E1_Ab KnownBoundary 0 58.68 45.32 18.75 5.89 15.87 66.27 61.39 14.13 9.06 5.69 79.07 11.85 6.33 27.19 44.50 77.07 73.96 32.75 9.22 18.60 73.45 38.88 60.78 9 ER1b ExonRegion 1 64.09 32.44 16.39 7.42 69.73 136.13 116.65 11.28 10.86 24.22 87.69 9.42 13.39 196.58 124.58 117.38 90.50 60.11 17.72 23.84 87.57 61.37 85.82 10 E1_Ac KnownBoundary 0 16.08 11.71 11.95 1.73 6.62 14.59 2.25 1.81 1.74 8.11 43.27 51.02 66.72 98.83 38.32 37.68 56.38 16.58 4.33 21.22 60.29 22.53 29.54 11 ER1c ExonRegion 1 14.41 17.81 28.70 7.36 7.16 4.50 5.00 9.76 11.36 23.03 124.70 21.79 34.87 111.72 115.72 41.75 97.96 31.89 10.84 40.80 121.42 53.97 51.91 12 E1a_E2a KnownJunction 1 16.74 45.06 73.47 34.19 12.56 17.94 11.61 40.62 29.25 57.35 251.64 6.30 32.95 283.66 252.43 147.31 303.60 93.23 33.88 96.83 180.70 221.85 93.22 13 ER1d ExonRegion 1 19.45 40.16 57.52 27.17 10.03 11.35 9.35 29.71 25.09 47.09 221.68 5.95 27.55 230.73 217.78 108.85 253.76 71.60 30.46 74.47 173.54 169.03 94.71 14 ER2a ExonRegion 1 55.29 89.23 91.80 57.04 63.72 51.62 69.86 60.03 57.94 66.79 210.28 64.62 63.29 414.53 366.85 312.73 213.58 157.47 60.29 126.69 151.16 265.43 189.87 15 E2a_E3a KnownJunction 0 63.57 54.00 77.23 34.06 76.66 69.34 50.65 45.18 46.85 59.77 160.62 166.25 153.56 251.22 357.38 262.58 172.14 92.40 33.88 111.98 101.38 243.28 112.42 16 E3_Aa NovelBoundary 0 0.00 3.35 3.87 10.39 8.40 2.90 15.37 6.65 16.70 6.04 5.32 6.30 0.00 12.36 0.00 17.17 12.62 24.00 0.00 11.44 19.58 26.45 16.56 17 E3a_E4b KnownJunction 0 56.31 36.24 143.16 77.21 129.88 145.48 155.72 76.27 77.02 76.58 235.74 103.83 144.63 312.97 388.28 308.55 240.49 77.43 52.99 122.66 93.16 317.92 92.62 18 E3a_E5a KnownJunction 0 0.00 0.00 5.23 2.00 0.00 0.00 0.00 6.65 7.84 1.67 17.43 6.30 0.00 24.37 8.90 7.18 18.61 16.13 4.24 11.12 5.31 20.45 24.24 19 ER3a ExonRegion 0 63.74 54.52 142.52 76.22 97.56 118.56 102.15 86.36 92.82 99.74 241.31 170.35 163.25 321.58 347.26 351.28 270.17 129.48 51.21 152.21 137.39 350.43 142.31 20 ER3b ExonRegion 0 6.22 11.15 11.99 10.04 9.99 13.96 16.71 14.26 19.80 9.20 24.44 19.20 10.57 28.94 10.05 38.01 27.84 19.62 7.12 31.40 21.14 25.31 25.42 21 E3_Db NovelBoundary 0 19.86 23.35 22.62 21.71 24.11 5.22 28.44 31.34 35.56 25.98 19.79 0.00 14.77 28.96 17.80 60.92 19.54 51.32 8.47 29.21 23.41 28.23 20.06 22 I3 Intron 0 13.83 21.38 18.48 22.22 22.51 18.77 30.19 18.42 23.95 14.38 24.53 54.17 36.65 31.55 11.53 30.86 22.93 15.18 9.36 30.56 8.09 27.29 20.91 23 I3_SR1 SilentIntronRegion 0 10.02 17.26 21.52 20.05 24.88 15.28 19.62 15.48 24.85 11.23 24.49 40.72 20.31 32.71 11.54 65.42 24.05 35.83 13.89 38.25 19.79 20.66 32.99 24 I3_AR1 ActiveIntronRegion 0 12.38 20.64 22.76 24.02 12.08 11.22 27.94 17.33 26.75 11.50 29.57 56.22 42.95 38.65 15.02 41.93 27.84 26.49 7.39 42.72 16.50 27.53 20.23 25 I3_SR2 SilentIntronRegion 0 9.39 10.46 11.96 10.45 23.16 16.09 27.26 19.28 14.42 11.41 25.99 90.61 67.54 28.93 11.80 28.16 28.19 13.13 7.82 30.61 9.02 23.40 17.51 26 I3_SR3 SilentIntronRegion 0 9.10 13.38 20.30 18.33 12.68 15.26 23.59 12.59 18.95 8.85 22.28 24.61 19.87 28.69 10.44 38.00 26.30 22.04 16.76 23.18 10.51 25.91 32.89 27 I3_AR3 ActiveIntronRegion 0 13.26 16.63 14.04 20.14 18.46 12.63 32.46 18.65 17.51 13.89 14.81 41.22 32.42 25.78 8.78 24.52 10.59 6.34 9.91 24.39 2.95 29.44 19.14 28 I3_SR4 SilentIntronRegion 0 17.64 2.03 11.85 5.45 6.24 18.95 14.56 0.00 9.88 11.09 9.66 46.18 25.01 19.49 15.47 9.91 8.80 1.23 12.74 7.80 0.00 17.36 0.98 29 I3_AR4 ActiveIntronRegion 0 17.78 29.82 19.89 27.56 30.39 25.56 34.10 20.78 30.07 18.56 26.90 58.93 34.22 33.28 11.77 25.83 23.02 11.75 7.24 31.33 5.49 28.61 17.71 30 E4_Aa NovelBoundary 0 24.82 54.60 35.81 81.11 62.31 28.79 69.16 26.78 41.81 27.16 26.80 75.02 49.35 12.07 15.08 22.30 4.39 9.45 12.99 51.13 11.49 44.82 23.90 31 ER4a ExonRegion 1 62.26 58.61 68.71 66.69 68.12 42.55 50.99 47.04 43.50 35.47 24.17 88.59 67.59 31.66 25.66 31.17 18.86 11.00 15.39 34.43 6.16 46.10 21.03 32 E4_Ab KnownBoundary 1 164.47 93.21 134.50 123.96 86.67 16.47 56.00 89.21 66.00 52.60 13.37 85.98 150.31 24.19 40.92 11.71 29.27 9.95 15.15 47.68 3.09 72.07 8.02 33 ER4b ExonRegion 0 190.84 139.61 298.85 193.74 308.73 258.75 290.97 184.05 161.70 162.05 506.48 254.13 264.33 573.44 540.19 369.75 457.60 125.34 91.19 221.04 181.25 452.59 210.12 34 E4_Da NovelBoundary 0 44.82 45.72 32.35 57.70 87.95 45.03 25.66 29.33 31.28 10.31 14.85 51.62 19.97 18.19 4.45 10.68 13.65 10.24 4.61 30.17 3.15 32.27 4.35 35 E4a_E5a KnownJunction 0 191.74 113.66 305.87 138.94 233.96 107.27 123.70 135.01 160.82 150.16 392.52 331.61 410.85 569.37 571.98 323.08 395.70 154.17 93.18 249.02 163.59 299.06 155.79 36 I4 Intron 0 31.15 27.71 34.62 40.96 26.90 16.77 22.21 22.00 20.07 18.63 12.76 21.63 17.90 13.38 10.65 12.24 12.40 5.91 9.45 17.40 4.27 28.14 18.68 37 I4_AR1 ActiveIntronRegion 0 19.05 21.02 17.64 15.57 47.06 22.22 11.64 7.42 9.77 13.39 6.00 23.68 15.66 10.44 10.45 2.36 11.07 4.18 9.32 8.42 1.85 20.47 19.30 38 I4_AR2 ActiveIntronRegion 1 25.40 41.01 29.00 25.67 28.99 21.70 29.57 25.35 27.58 27.53 1.93 18.04 35.18 14.62 6.29 11.89 3.30 16.63 19.11 16.67 6.61 20.14 23.98 39 I4_AR3 ActiveIntronRegion 0 29.79 37.39 28.18 29.35 25.73 26.52 35.75 26.33 25.65 23.38 5.50 20.98 39.32 18.99 5.13 13.95 0.00 16.77 17.40 14.89 9.49 26.44 25.53 40 I4_SR1 SilentIntronRegion 0 30.32 28.56 28.10 26.75 17.53 15.78 20.72 21.85 19.08 21.55 13.19 18.82 18.66 15.94 7.64 10.45 12.08 6.99 8.76 13.66 7.00 17.61 19.54 41 I4_AR5 ActiveIntronRegion 0 33.62 27.57 40.47 52.00 28.43 16.14 23.85 23.98 21.60 17.64 14.08 22.81 16.89 12.44 12.36 14.44 13.36 5.03 9.35 20.45 3.12 34.58 17.83 42 E5_Aa NovelBoundary 0 39.19 41.70 49.82 38.26 32.68 30.89 30.52 27.64 24.54 19.15 17.27 0.00 20.29 19.60 22.37 7.52 8.98 8.87 0.00 11.95 2.66 22.17 27.66 43 ER5a ExonRegion 0 159.10 158.50 328.66 217.83 205.76 144.87 147.23 177.37 169.96 159.50 485.77 449.19 327.72 575.58 564.41 508.00 453.82 189.70 153.51 229.88 208.46 507.56 304.82 44 E5a_E6a KnownJunction 0 299.68 179.38 387.57 305.06 362.48 253.49 294.70 216.95 201.01 213.55 616.05 439.19 336.34 766.44 794.98 706.40 554.18 208.47 200.38 224.92 276.08 892.85 403.77 45 I5_AR1 ActiveIntronRegion 0 12.71 17.62 19.48 11.51 36.57 5.50 13.68 10.30 7.39 1.72 5.15 5.94 11.68 3.95 8.36 7.93 5.50 4.60 3.19 5.67 2.94 9.72 9.83 46 ER6a ExonRegion 0 214.98 146.55 358.28 255.92 206.25 164.43 186.37 213.49 206.88 197.92 510.19 486.06 349.50 655.93 495.05 504.64 472.01 216.75 166.03 218.10 278.17 548.55 300.04 47 E6_Da KnownBoundary 0 310.43 156.62 382.81 362.26 312.31 316.69 364.83 230.22 233.94 232.52 426.00 547.23 356.63 552.48 279.50 449.11 274.43 239.81 141.56 210.22 166.06 617.78 208.12 48 ER6b ExonRegion 0 288.69 165.82 307.49 264.87 240.68 224.23 248.58 190.87 168.74 176.93 314.25 492.68 333.52 422.32 267.51 353.62 234.26 143.43 117.40 182.52 102.36 495.09 232.26 49 E6_Db KnownBoundary 1 303.16 158.59 198.40 171.47 205.77 175.64 222.71 152.96 120.69 141.67 230.32 528.77 429.03 220.79 275.67 179.95 136.70 46.47 61.65 180.25 50.97 430.59 134.02 50 ER6c ExonRegion 0 292.33 152.23 238.76 208.72 245.37 135.24 177.51 179.12 119.35 138.18 221.96 372.15 194.40 262.79 295.14 183.82 172.64 69.67 66.78 165.69 82.40 368.92 136.11 51 IG25_AR2 ActiveIntergenicRegion 0 6.00 12.82 6.40 18.13 5.50 3.36 7.13 5.09 8.54 8.63 0.27 7.94 9.38 5.32 4.27 1.82 0.00 3.59 8.94 6.91 0.31 0.00 2.53