Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SLC25A43 Gene 0 53.16 3.40 87.42 5.65 24.06 28.94 8.17 21.59 13.47 17.35 3.61 9.79 44.54 40.82 34.65 43.89 43.88 1.28 0.26 19.23 70.45 129.11 82.80 2 217909 Transcript 0 0.91 0.00 0.72 0.34 0.00 3.21 0.00 0.29 0.00 0.48 0.00 0.00 5.08 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.63 3.47 0.01 3 447694 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 488158 Transcript 0 7.57 0.60 18.18 1.99 2.67 7.47 1.93 4.06 2.32 2.86 0.22 0.01 6.62 3.55 4.49 12.34 7.99 0.54 0.00 7.21 12.35 15.74 18.85 5 336249 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 326714 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 493093 Transcript 0 0.00 0.00 1.60 0.00 0.00 0.00 0.00 0.00 1.79 3.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 5.62 0.00 3.33 8 495750 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 484058 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 ER1a ExonRegion 0 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.15 0.00 0.01 11 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.59 0.00 0.00 12 ER1b ExonRegion 0 4.14 0.00 4.02 0.00 0.00 3.59 0.82 0.00 0.00 0.39 0.00 0.00 0.00 7.19 4.75 2.47 10.82 0.00 0.00 1.27 17.02 9.18 13.12 13 E1_Ac KnownBoundary 0 10.59 0.00 8.37 0.00 3.65 5.79 4.46 0.00 0.00 0.00 0.00 0.00 0.00 15.30 13.97 3.76 22.91 0.00 0.00 3.20 38.86 23.02 33.72 14 E1_Ad KnownBoundary 0 3.78 0.00 3.52 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 2.97 2.82 8.54 15 E1_Ae KnownBoundary 0 3.48 0.00 1.24 0.00 0.00 19.99 0.00 1.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.28 17.58 0.00 0.00 2.75 16.37 5.82 4.18 16 ER1c ExonRegion 1 7.41 0.00 4.90 0.00 0.00 10.24 1.21 0.00 0.00 1.15 0.00 0.00 0.00 10.22 13.78 2.97 22.28 0.00 0.00 2.04 20.57 12.94 24.23 17 ER1d ExonRegion 1 8.47 0.00 4.66 0.00 0.00 15.77 0.00 0.00 0.00 1.15 0.00 0.00 0.00 6.17 13.35 2.97 21.79 0.00 0.00 0.00 17.19 5.42 20.56 18 ER1e ExonRegion 0 1.19 0.00 2.02 0.00 0.00 7.94 0.00 0.00 0.00 0.76 0.00 0.00 0.00 1.93 5.29 2.78 13.38 0.26 0.00 1.52 19.23 3.25 2.26 19 E1_Af KnownBoundary 0 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.68 3.12 4.10 20 E1_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 2.41 0.00 0.00 13.37 0.00 0.00 3.20 21.13 5.63 0.00 21 ER1f ExonRegion 0 2.12 0.00 8.58 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 12.02 0.58 4.16 15.84 1.85 0.00 2.13 36.58 10.42 5.87 22 E1_Db KnownBoundary 0 6.59 0.00 16.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.77 12.13 4.45 21.45 13.28 2.53 0.00 0.00 39.85 25.78 12.46 23 ER1g ExonRegion 0 2.82 0.00 9.30 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 6.77 12.93 2.04 10.02 21.03 1.85 0.00 2.36 42.28 18.75 8.16 24 ER1h ExonRegion 0 3.64 0.40 9.64 0.70 0.97 6.35 0.51 0.97 0.84 1.54 1.60 0.97 9.38 19.99 17.50 26.06 19.59 0.47 0.00 11.66 50.32 41.70 32.64 25 E1c_E2a KnownJunction 0 6.74 0.00 21.61 1.37 4.07 24.64 0.00 2.18 0.00 6.93 0.00 0.00 0.00 28.96 0.00 11.88 16.36 4.31 0.00 2.75 69.13 18.98 32.18 26 E1c_E3a KnownJunction 0 0.00 0.00 1.60 0.00 0.00 0.00 0.00 0.00 1.79 3.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 5.62 0.00 3.33 27 ER1i ExonRegion 0 8.47 2.03 22.19 1.36 5.35 10.80 0.59 3.46 2.47 6.63 0.43 4.33 8.86 19.49 3.55 30.05 15.40 1.44 0.00 12.29 91.58 38.89 53.19 28 ER1j ExonRegion 1 5.95 2.03 22.82 1.28 3.85 19.60 0.25 3.46 1.31 10.11 0.00 1.62 1.47 21.72 2.72 18.76 19.81 1.85 0.00 8.51 78.37 24.22 47.54 29 I1_AR1 ActiveIntronRegion 0 15.31 0.00 21.39 0.18 1.11 0.00 0.56 8.30 0.78 0.73 0.00 0.00 6.18 0.00 3.38 4.41 5.61 0.00 0.00 6.45 2.81 4.81 1.25 30 ER2a ExonRegion 0 6.83 0.04 59.22 4.06 5.38 31.72 4.86 14.70 3.13 9.88 2.91 1.87 9.38 37.35 20.04 32.20 45.02 1.81 0.00 21.63 86.56 71.16 43.38 31 E2_Ab KnownBoundary 0 20.89 0.00 86.10 7.86 4.33 26.97 4.50 25.51 8.68 9.91 2.05 0.00 27.27 50.21 53.77 74.85 70.22 2.57 0.00 60.21 125.66 98.03 111.14 32 ER2b ExonRegion 0 13.81 1.67 72.77 5.91 6.50 12.01 2.37 20.25 7.52 11.22 2.97 1.25 27.85 56.08 31.89 66.47 54.09 1.40 0.00 25.25 101.46 92.94 100.96 33 E2a_E3a KnownJunction 0 23.56 6.31 57.24 10.59 3.14 7.55 6.18 19.39 4.75 12.57 2.26 0.00 26.62 28.90 30.41 51.61 47.31 0.00 0.00 21.60 91.99 52.42 44.05 34 E2a_E5b KnownJunction 0 0.00 0.00 1.39 0.00 3.74 0.00 0.00 2.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.54 0.00 0.00 0.00 2.75 0.00 13.84 0.00 35 ER3a ExonRegion 0 18.90 2.52 52.71 4.76 11.40 25.60 7.13 16.83 9.04 17.84 3.42 4.20 30.82 47.51 29.35 52.38 60.03 0.54 0.00 17.55 120.21 55.15 100.56 36 E3a_E4a KnownJunction 0 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.28 2.47 0.00 0.00 0.00 0.00 0.00 0.00 3.03 8.21 0.00 37 E3a_E5a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.33 0.00 6.91 38 E3a_E5b KnownJunction 0 12.74 3.35 19.19 1.83 12.56 11.81 4.06 6.24 4.02 2.71 9.95 0.00 13.96 47.32 23.73 15.38 51.89 0.00 0.00 0.00 80.62 27.49 46.86 39 I3 Intron 0 15.43 0.65 22.94 1.63 4.55 5.32 2.70 5.23 4.48 5.10 0.19 0.89 12.16 3.89 7.77 13.95 9.98 0.63 0.10 13.03 16.71 9.05 20.87 40 I3_AR1 ActiveIntronRegion 0 14.55 0.10 3.44 0.00 0.00 5.21 3.53 0.71 1.78 0.44 0.00 0.00 6.55 5.26 3.87 10.05 4.35 0.00 0.00 0.00 7.52 0.00 22.79 41 I3_AR2 ActiveIntronRegion 0 10.77 0.37 13.33 0.41 12.31 5.98 3.86 6.01 3.95 3.30 0.00 0.00 17.75 3.10 8.11 17.67 11.43 0.00 0.00 8.09 10.90 7.45 16.62 42 I3_SR2 SilentIntronRegion 0 18.59 0.82 30.70 2.18 4.75 6.18 2.97 6.35 5.99 6.42 0.26 1.30 14.64 4.40 8.44 16.99 9.52 0.85 0.16 16.58 20.31 10.69 25.40 43 I3 Intron 0 19.10 0.00 17.04 0.63 3.33 2.28 2.47 6.42 2.86 2.13 0.00 1.11 5.06 2.67 9.77 8.32 2.05 0.00 0.00 10.59 4.80 7.78 13.70 44 I3_SR1 SilentIntronRegion 0 19.10 0.00 17.02 0.63 3.33 2.28 2.47 6.42 2.86 2.13 0.00 1.11 5.06 2.67 9.77 8.32 2.05 0.00 0.00 10.59 4.80 7.78 13.70 45 I3 Intron 0 14.01 1.01 23.40 1.08 3.67 8.02 2.11 8.52 5.11 7.16 0.29 0.33 4.06 2.09 4.55 16.17 8.66 1.12 0.00 15.47 13.58 7.92 17.31 46 I3_SR1 SilentIntronRegion 0 14.04 1.01 23.44 1.08 3.67 8.04 2.11 8.53 5.12 7.17 0.29 0.33 4.07 2.10 4.56 16.20 8.68 1.12 0.00 15.49 13.60 7.94 17.34 47 E4_Aa NovelBoundary 0 3.78 6.64 32.88 1.63 11.46 5.79 4.28 0.00 7.64 9.72 0.00 0.00 6.17 12.42 24.23 14.78 26.83 0.00 0.00 16.23 16.37 13.66 11.95 48 ER4a ExonRegion 0 8.96 2.41 33.33 2.84 4.16 10.62 1.10 2.18 4.44 9.94 0.98 2.73 6.95 3.87 4.33 16.55 10.23 1.09 0.00 23.06 16.95 14.12 8.23 49 E4_Da KnownBoundary 0 36.75 6.58 69.75 5.33 10.61 13.17 2.12 7.35 7.41 12.57 2.16 0.00 12.01 4.59 15.45 52.46 20.01 2.53 0.00 31.32 21.25 36.01 11.01 50 ER4b ExonRegion 0 16.70 2.39 40.62 3.79 3.75 10.76 1.96 2.52 3.24 8.35 0.21 0.00 8.21 5.17 6.40 23.13 16.36 1.59 0.00 18.57 15.16 27.11 33.45 51 E4_Db NovelBoundary 1 32.23 0.00 42.02 0.00 0.00 0.00 0.00 9.49 2.63 10.40 0.00 0.00 13.15 10.24 9.89 32.38 0.00 2.57 0.00 24.16 13.16 7.84 29.45 52 E4b_E5a KnownJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.76 0.00 53 E4b_E5b NovelJunction 0 3.78 0.00 0.00 0.00 0.00 5.34 0.00 0.00 0.00 2.79 0.00 0.00 0.00 2.24 0.00 7.26 0.00 0.00 0.00 0.00 3.15 8.21 0.00 54 I4 Intron 0 11.53 0.55 22.70 2.06 4.38 5.23 2.39 6.30 4.44 4.27 0.20 1.31 9.58 3.30 6.48 11.48 8.63 0.48 0.00 12.42 15.12 7.17 16.29 55 I4_SR1 SilentIntronRegion 0 11.53 0.55 22.70 2.06 4.38 5.23 2.39 6.30 4.44 4.27 0.20 1.31 9.58 3.30 6.48 11.47 8.63 0.48 0.00 12.42 15.12 7.17 16.29 56 I4 Intron 0 13.62 0.57 18.72 1.48 5.71 8.06 3.24 5.74 4.37 3.45 0.18 2.83 15.97 3.63 5.70 8.06 7.53 0.31 0.18 10.63 7.01 11.55 14.67 57 I4_SR1 SilentIntronRegion 0 13.63 0.57 18.73 1.48 5.71 8.07 3.25 5.74 4.38 3.45 0.18 2.82 15.98 3.63 5.70 8.06 7.54 0.31 0.18 10.63 7.01 11.55 14.67 58 E5_Aa NovelBoundary 0 111.13 0.00 52.45 3.03 4.33 67.46 3.97 9.98 18.63 2.55 2.68 6.30 60.87 11.71 0.00 17.00 22.44 0.00 0.00 24.99 32.80 65.76 58.39 59 ER5a ExonRegion 0 13.59 0.01 32.10 2.11 6.92 19.12 5.77 13.74 6.06 3.08 0.68 0.03 18.29 9.01 11.55 26.25 15.60 0.59 0.00 10.25 34.25 30.09 41.96 60 E5_Ab KnownBoundary 0 35.64 0.00 37.11 5.06 24.79 8.63 10.16 14.46 6.80 4.11 0.00 0.00 0.00 5.47 9.77 27.26 15.61 0.00 0.00 5.62 27.31 55.72 38.24 61 ER5b ExonRegion 0 33.55 0.49 76.45 3.24 20.03 37.29 7.65 24.12 14.75 17.67 8.71 8.82 38.85 52.51 37.05 54.63 64.27 0.00 0.00 21.26 119.43 124.05 104.23 62 E5_Da NovelBoundary 0 13.85 0.00 16.71 1.56 0.00 8.01 0.00 6.28 1.71 4.08 0.00 0.00 6.82 0.00 5.93 11.79 12.72 0.00 0.00 3.26 30.58 14.45 0.00 63 E5a_E6a KnownJunction 0 42.75 2.63 100.47 1.56 44.74 43.50 6.09 30.89 13.86 20.04 16.64 0.00 46.91 54.68 37.83 44.60 89.48 0.00 0.00 11.63 121.02 141.63 102.27 64 E5a_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 65 I5 Intron 0 13.29 0.52 9.45 1.21 3.41 3.89 1.91 3.06 4.06 3.05 0.00 1.21 14.94 3.23 7.63 3.78 7.00 0.23 0.00 7.76 17.01 12.38 13.46 66 I5_AR1 ActiveIntronRegion 0 14.82 0.00 5.11 0.41 1.07 2.93 1.59 1.55 0.74 2.05 0.00 0.00 4.63 1.36 8.23 4.16 3.96 0.00 0.00 3.83 10.13 9.16 7.64 67 I5_SR1 SilentIntronRegion 0 15.63 1.29 14.92 1.89 5.35 3.94 2.25 5.63 6.69 4.73 0.00 2.44 18.82 4.65 8.19 4.95 11.13 0.63 0.00 12.93 27.78 15.75 18.71 68 I5_AR2 ActiveIntronRegion 0 5.91 0.19 8.62 1.65 4.79 5.90 2.00 1.54 6.28 2.07 0.00 1.52 29.82 4.59 5.44 0.87 5.86 0.00 0.00 6.61 11.79 13.11 16.25 69 ER6a ExonRegion 0 47.53 2.03 95.95 3.68 26.19 41.79 10.59 31.90 14.07 20.44 14.47 7.61 53.58 63.05 36.31 36.39 74.82 1.46 0.00 18.44 102.37 134.86 114.35 70 E6_Da KnownBoundary 0 79.13 2.63 92.81 5.59 21.05 29.19 21.33 33.43 19.47 19.61 11.90 6.30 69.15 74.17 35.35 36.14 73.49 2.11 0.00 25.31 69.01 119.47 138.37 71 ER6b ExonRegion 1 70.71 5.55 122.40 6.26 28.28 38.09 9.87 32.13 18.22 22.78 4.44 6.89 66.09 73.38 21.89 49.31 54.09 1.05 0.00 26.45 83.64 128.18 113.59 72 E6_Db KnownBoundary 1 94.24 8.49 65.23 4.00 33.45 33.33 11.22 9.08 8.62 9.13 0.00 0.00 50.00 49.91 10.75 53.15 21.41 0.00 0.00 23.65 55.35 113.40 70.00 73 E6_Ab KnownBoundary 1 83.72 2.50 93.99 0.00 19.44 70.81 12.19 21.85 19.21 18.37 0.00 19.66 35.39 52.98 9.89 34.26 43.38 0.00 0.00 14.57 60.85 172.92 129.84 74 ER6c ExonRegion 1 110.66 6.10 136.37 4.09 38.42 72.17 14.47 27.90 20.56 24.00 1.38 17.94 64.66 82.02 29.01 59.44 51.87 0.00 0.00 23.86 86.57 204.63 148.51 75 ER6d ExonRegion 0 63.69 4.06 116.94 2.89 31.80 55.01 13.02 27.68 18.95 30.13 7.65 15.53 79.23 69.29 40.62 55.49 74.79 2.27 0.00 27.34 98.39 194.17 131.86 76 E6_Dc KnownBoundary 0 61.34 9.60 110.61 0.00 31.92 15.45 15.81 28.38 20.25 29.25 17.43 17.56 32.95 65.81 51.30 58.87 74.24 0.00 0.00 31.77 118.24 172.92 76.91 77 ER6e ExonRegion 0 99.84 6.21 143.81 10.04 44.14 40.33 13.27 34.72 22.79 26.75 4.60 18.20 72.85 55.50 56.91 60.97 56.02 1.85 0.63 25.30 83.75 219.16 115.90 78 ER6f ExonRegion 0 1.76 0.00 1.43 0.68 0.00 6.42 0.00 0.58 0.00 0.96 0.00 0.00 10.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 6.95 0.00