Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ACSL4 Gene 0 29.62 58.46 24.47 28.83 48.83 94.52 46.40 38.21 60.44 44.57 139.95 170.61 200.36 228.43 94.70 143.91 208.43 92.54 18.27 100.98 122.55 631.41 480.61 2 340800 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 348502 Transcript 0 3.70 1.53 3.74 0.00 0.67 0.46 3.05 1.71 4.75 2.66 27.91 16.30 21.05 27.46 24.95 17.33 56.80 3.82 0.00 1.06 46.06 99.97 78.41 4 469796 Transcript 0 0.00 17.37 0.00 2.00 0.00 11.58 0.00 3.98 17.68 6.85 0.00 0.00 0.00 4.94 0.00 0.00 3.83 16.50 4.80 44.17 3.09 3.12 0.00 5 469857 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 372078 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 ER1b ExonRegion 0 0.00 1.31 0.00 0.00 0.00 1.95 0.31 0.00 0.00 0.26 2.38 0.00 0.00 2.35 1.38 3.96 5.76 1.90 0.00 1.15 6.92 12.23 37.59 9 E1_Ac KnownBoundary 0 3.70 10.06 0.00 0.00 4.24 11.53 2.03 0.00 0.00 3.17 26.53 0.00 0.00 20.43 15.20 37.60 41.70 15.01 0.00 6.52 48.25 83.34 254.98 10 E1_Ad KnownBoundary 0 6.59 19.01 1.12 0.00 8.66 19.99 27.73 1.56 1.22 2.26 23.32 0.00 0.00 111.19 36.34 74.34 52.83 44.11 4.80 26.53 53.19 62.89 252.59 11 ER1c ExonRegion 0 1.02 14.66 0.00 0.38 4.98 12.39 10.59 0.48 0.89 2.14 12.53 0.00 0.00 55.05 18.41 45.20 42.00 24.47 0.44 16.95 49.09 64.80 208.00 12 ER1d ExonRegion 0 8.81 41.38 2.73 5.45 6.17 64.40 30.83 7.44 14.63 13.33 33.17 8.99 5.96 105.50 38.88 76.21 70.25 32.62 1.63 54.67 78.02 241.98 449.88 13 E1a_E2a KnownJunction 0 3.11 34.93 8.04 5.59 20.97 34.18 10.95 16.88 30.84 22.19 35.75 6.30 46.43 52.62 9.27 23.75 77.79 42.12 0.00 50.81 73.89 113.59 94.75 14 I1 Intron 0 3.66 0.59 2.63 0.00 2.31 1.59 4.96 0.74 0.00 0.00 24.51 5.36 10.73 16.57 21.39 26.55 21.88 1.86 3.67 4.90 12.70 32.42 100.69 15 I1_AR1 ActiveIntronRegion 0 3.70 0.59 2.66 0.00 2.34 1.60 5.02 0.75 0.00 0.00 24.77 5.42 10.85 16.75 21.62 26.85 22.13 1.88 3.71 4.95 12.83 32.76 101.84 16 I1_SR2 SilentIntronRegion 0 6.47 2.50 14.56 9.31 4.59 2.25 9.27 4.51 1.78 1.97 6.12 11.84 14.12 4.01 18.57 9.85 11.44 0.93 0.83 6.34 2.87 21.73 41.90 17 I1_AR2 ActiveIntronRegion 0 6.05 6.90 6.61 11.97 2.68 4.72 27.42 6.91 2.47 5.04 4.97 9.74 0.00 0.00 9.84 2.34 0.12 0.00 0.00 7.83 0.00 5.95 14.89 18 ER2a ExonRegion 0 0.44 25.90 4.37 2.06 9.74 24.95 6.15 9.65 22.30 13.76 48.76 37.17 87.69 72.23 30.33 32.53 92.74 20.92 1.56 45.97 93.14 103.23 139.80 19 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 E2a_E4a KnownJunction 0 0.00 17.37 0.00 2.00 0.00 11.58 0.00 3.98 17.68 6.85 0.00 0.00 0.00 4.94 0.00 0.00 3.83 16.50 4.80 44.17 3.09 3.12 0.00 21 E2a_E4c KnownJunction 1 0.00 0.00 5.03 0.00 0.00 0.00 2.12 2.55 8.88 3.04 54.86 26.11 35.06 51.68 36.84 28.71 113.60 6.72 0.00 0.00 92.11 180.15 148.02 22 I2 Intron 0 8.10 4.92 4.39 5.07 7.09 3.32 11.31 4.94 4.69 4.64 13.33 30.65 65.00 33.30 12.61 28.61 40.36 5.09 3.38 12.84 6.60 37.39 49.69 23 I2_SR1 SilentIntronRegion 0 13.60 4.96 4.42 4.84 8.85 3.77 13.10 4.49 4.16 3.73 10.78 27.86 62.37 28.99 17.42 31.16 42.14 3.10 1.36 12.22 6.12 32.23 55.35 24 I2_SR2 SilentIntronRegion 0 5.34 2.81 2.59 8.59 2.17 5.71 13.85 1.73 3.88 0.99 24.17 22.40 64.12 37.41 15.47 33.24 65.07 6.58 9.34 13.54 13.69 37.64 76.40 25 I2_AR1 ActiveIntronRegion 0 2.71 2.90 1.89 2.78 3.37 5.47 9.37 0.96 3.24 2.27 9.13 22.94 43.48 24.33 7.31 16.18 25.67 3.11 2.17 11.13 1.44 29.23 29.39 26 I2_AR3 ActiveIntronRegion 0 1.16 1.15 3.72 1.91 6.11 2.08 8.63 4.67 2.12 4.34 9.70 40.26 67.22 38.28 10.54 28.04 71.68 8.44 1.11 20.67 6.32 24.06 37.74 27 I2_SR3 SilentIntronRegion 0 1.80 2.74 2.80 3.63 2.59 2.34 10.09 2.74 5.26 3.56 13.26 40.74 78.74 37.27 9.82 35.50 47.13 7.10 4.87 13.37 8.27 35.26 58.51 28 I2_AR4 ActiveIntronRegion 0 1.89 0.11 5.20 3.94 6.62 0.54 7.85 3.09 3.55 0.93 18.26 41.40 62.69 48.33 9.84 42.83 75.83 8.48 1.85 18.60 20.44 36.39 80.50 29 I2_SR4 SilentIntronRegion 0 3.69 3.07 3.44 4.50 4.88 1.57 9.76 3.72 3.15 4.50 11.44 39.39 87.02 31.07 7.46 19.76 31.38 3.31 1.84 13.49 4.32 38.59 40.32 30 I2_AR5 ActiveIntronRegion 0 17.66 10.78 8.02 7.71 14.28 5.29 13.67 10.80 7.79 8.18 17.89 15.80 33.87 38.36 19.75 36.57 43.65 7.88 5.97 11.74 8.64 45.47 53.07 31 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 ER3a ExonRegion 0 0.94 0.11 0.00 0.00 0.00 0.00 0.22 0.00 0.21 0.19 0.43 0.00 1.30 1.08 0.00 0.33 2.75 0.00 0.00 0.00 0.37 2.43 0.33 33 I3 Intron 0 15.53 12.44 11.56 10.58 13.80 6.34 9.86 13.01 11.45 12.45 21.28 31.38 88.01 42.80 20.93 38.26 38.62 8.86 5.42 12.79 6.44 65.60 62.63 34 I3_SR1 SilentIntronRegion 0 16.05 12.86 11.94 10.94 14.26 6.55 10.19 13.45 11.83 12.87 21.99 32.42 90.94 44.23 21.63 39.53 39.91 9.15 5.60 13.21 6.66 67.79 64.72 35 E4_Aa NovelBoundary 1 27.19 49.93 10.38 7.16 7.47 2.44 16.96 10.93 9.81 15.61 17.32 43.21 88.31 39.67 33.75 60.84 59.84 8.46 4.24 23.59 9.02 78.20 55.14 36 ER4a ExonRegion 1 14.68 35.03 17.64 27.43 29.73 59.52 31.81 27.23 61.65 41.98 30.30 46.98 119.43 56.05 21.94 41.46 84.82 98.83 14.15 166.76 17.00 182.44 101.42 37 E4_Ab KnownBoundary 0 28.08 90.51 32.64 44.65 90.75 132.48 47.03 54.26 90.25 80.51 48.75 94.68 119.80 73.28 14.09 58.70 146.52 124.03 30.87 268.71 10.75 268.82 125.83 38 ER4b ExonRegion 1 10.38 85.21 26.06 40.70 46.78 101.31 53.66 45.96 77.37 68.79 40.74 43.37 109.97 67.56 20.61 63.59 97.98 96.80 22.30 207.37 24.14 234.78 131.63 39 E4_Ac KnownBoundary 0 41.34 152.80 33.41 51.54 97.79 162.52 78.39 67.53 74.71 76.53 42.91 61.07 52.43 122.20 24.60 108.35 121.36 77.97 9.41 266.47 26.69 381.36 227.75 40 ER4c ExonRegion 0 29.99 100.64 21.48 44.11 56.99 121.42 40.73 54.87 91.16 80.60 162.12 118.00 215.44 377.69 108.77 173.77 298.06 151.08 12.88 255.77 201.38 827.87 614.26 41 E4_Da KnownBoundary 0 22.60 89.59 15.73 30.47 43.80 103.18 29.19 51.47 84.49 73.49 235.16 176.16 190.90 486.32 116.32 286.68 398.13 176.09 29.74 235.60 276.39 1231.34 966.82 42 ER4d ExonRegion 0 20.62 60.66 21.60 32.75 47.92 122.27 43.66 48.82 86.34 68.16 272.35 293.69 402.00 441.29 102.93 257.84 449.45 171.79 32.31 185.93 287.73 1082.85 876.86 43 E4b_E5a KnownJunction 1 35.12 52.10 32.29 24.57 66.64 141.45 78.12 39.39 127.37 84.64 322.03 463.80 438.61 587.91 94.44 307.70 683.22 182.77 38.40 204.22 359.54 1309.05 923.37 44 ER5a ExonRegion 0 16.30 60.07 31.78 32.40 49.98 151.00 62.89 62.87 105.80 80.14 383.32 432.70 518.14 569.67 125.49 329.77 576.27 207.30 31.19 218.80 357.29 1316.36 1037.99 45 E5a_E6a KnownJunction 0 21.26 74.79 28.41 48.45 34.38 166.78 61.47 59.60 93.69 86.71 420.32 565.08 479.19 467.42 112.99 294.62 526.04 171.58 20.99 243.52 271.45 1276.17 959.48 46 ER6a ExonRegion 0 30.59 94.99 29.49 40.13 62.76 154.91 61.49 66.37 109.69 75.52 311.20 582.98 588.81 491.49 123.51 337.36 464.65 213.03 34.63 219.83 245.03 1288.58 1038.77 47 E6a_E7a KnownJunction 0 40.45 93.14 35.57 44.95 121.31 219.42 85.98 90.20 109.52 106.10 390.41 347.66 657.75 585.62 168.86 369.56 563.07 190.11 30.12 335.44 166.24 1665.80 1235.37 48 ER7a ExonRegion 0 27.99 103.00 35.64 53.95 81.66 181.40 95.18 87.58 117.28 101.30 368.49 421.33 489.92 535.02 150.43 385.78 543.98 236.96 39.87 262.25 256.06 1527.97 1202.69 49 E7a_E8a KnownJunction 0 61.64 79.79 46.83 65.09 79.97 185.18 85.90 84.24 151.59 118.30 393.57 383.68 403.71 549.89 169.23 425.70 564.00 288.81 66.35 291.46 390.93 1598.38 1297.18 50 ER8a ExonRegion 0 23.07 87.75 40.79 51.08 52.31 157.25 76.13 82.90 132.18 92.98 360.42 338.50 417.38 627.39 174.57 413.01 570.29 311.58 53.24 270.18 402.32 1497.26 1323.76 51 E8a_E9a KnownJunction 0 43.79 132.67 27.82 39.26 77.59 196.99 101.53 82.19 137.50 80.56 343.35 302.50 334.39 593.09 223.87 406.13 608.79 312.23 68.14 237.13 478.90 1369.92 1412.76 52 ER9a ExonRegion 0 22.99 109.91 29.95 39.85 45.53 146.67 80.08 52.15 115.37 71.54 327.03 227.44 261.02 466.12 149.63 319.82 498.09 251.19 46.09 191.44 351.86 1134.34 971.34 53 E9a_E10a KnownJunction 0 26.75 101.23 35.95 37.02 73.01 197.61 102.10 50.93 105.35 57.99 255.33 265.59 420.26 497.91 158.11 301.80 404.96 157.40 26.82 200.57 329.40 1037.48 999.52 54 ER10a ExonRegion 0 39.36 89.45 25.05 39.05 47.31 147.44 68.70 44.51 106.17 80.36 289.29 270.83 388.95 471.56 156.02 321.15 429.90 174.18 44.51 153.25 285.10 1343.15 1078.60 55 E10a_E11a KnownJunction 0 32.89 82.88 26.52 57.60 52.72 140.03 66.51 58.12 98.26 93.86 294.86 291.55 157.46 372.12 105.94 256.09 378.03 190.52 36.42 140.43 196.51 1036.99 931.23 56 ER11a ExonRegion 0 31.48 103.48 32.72 53.14 67.66 182.35 79.91 55.19 100.93 79.04 306.61 363.27 333.03 501.35 169.25 315.68 385.64 226.96 42.32 187.84 251.18 1198.13 1053.39 57 E11a_E12a KnownJunction 0 43.86 125.64 43.91 68.19 35.23 186.31 87.57 65.39 117.59 90.31 195.94 378.87 523.02 676.09 211.51 354.18 398.50 246.73 35.95 184.46 293.75 1460.97 1233.92 58 ER12a ExonRegion 0 27.85 95.74 32.23 34.84 74.22 165.77 75.73 65.59 113.25 67.83 257.03 350.54 323.12 525.04 179.58 300.17 442.13 307.20 46.01 188.76 368.77 1056.90 1092.26 59 E12a_E13a KnownJunction 0 56.23 102.35 51.65 41.35 71.82 168.03 86.07 82.23 129.19 87.60 284.49 330.41 351.92 668.55 235.99 389.30 545.21 270.81 41.70 207.86 388.15 1271.02 1353.69 60 ER13a ExonRegion 0 34.74 95.44 36.22 29.64 83.77 165.43 76.56 91.35 142.14 89.84 269.60 307.74 300.97 579.20 206.65 353.56 501.65 257.92 40.09 171.38 301.50 1155.60 1192.04 61 E13a_E14a KnownJunction 0 44.08 138.86 26.99 33.96 68.76 192.67 78.12 107.29 146.56 92.70 310.24 305.05 368.16 519.46 230.55 382.21 563.63 251.58 70.87 197.57 210.78 1241.39 1238.53 62 ER14a ExonRegion 0 52.69 141.37 46.32 44.36 74.11 186.49 93.70 78.57 140.10 83.93 300.16 337.29 401.41 447.35 191.56 261.36 438.40 134.51 33.93 189.15 161.56 1260.71 906.55 63 E14a_E15a KnownJunction 0 54.16 168.92 63.51 50.88 111.63 213.46 89.34 71.39 117.50 89.18 266.59 338.06 339.59 477.43 205.95 244.47 443.66 75.11 38.50 196.29 116.64 1274.02 826.66 64 ER15a ExonRegion 0 55.45 137.61 61.65 72.78 92.74 184.24 95.51 76.76 128.11 85.71 323.70 401.36 479.40 415.92 200.39 285.97 415.14 131.46 37.70 220.35 197.30 1405.13 885.77 65 E15a_E16a KnownJunction 1 39.49 115.64 82.55 85.90 131.49 240.15 145.74 91.23 120.83 92.46 278.33 635.61 621.55 390.31 212.50 311.20 418.79 174.77 22.40 220.45 215.48 1418.72 1131.91 66 ER16a ExonRegion 0 51.99 127.01 55.34 75.11 131.35 193.72 114.73 85.99 130.15 98.48 338.40 416.92 512.76 569.96 278.67 401.52 517.34 189.49 40.74 219.98 317.78 1397.32 1309.84 67 E16a_E17a KnownJunction 0 104.91 178.85 57.77 80.81 173.34 255.71 116.59 92.87 154.45 141.97 390.36 428.09 406.14 560.72 257.62 365.20 641.05 206.89 29.65 201.79 468.89 1120.14 1321.42 68 ER17a ExonRegion 0 55.14 120.98 45.06 54.58 113.21 198.18 101.60 76.54 129.80 108.37 290.65 303.67 373.52 474.41 208.31 280.63 418.87 135.98 23.14 168.14 255.18 1187.61 982.58 69 E17_Da KnownBoundary 0 66.16 152.60 51.68 63.69 280.14 243.55 189.63 92.79 149.80 118.54 269.02 463.80 682.75 400.85 242.29 191.23 297.99 48.58 12.61 133.08 94.40 1680.06 697.08 70 ER17b ExonRegion 0 29.58 26.25 16.47 16.13 32.95 42.74 22.09 16.11 17.25 13.38 22.30 51.13 55.94 37.14 46.21 21.98 21.63 7.62 4.83 13.69 5.93 218.93 79.72 71 ER17c ExonRegion 0 7.41 3.05 2.45 0.00 1.34 0.92 3.97 0.86 0.62 2.29 0.97 6.49 7.04 3.25 13.06 5.94 0.00 0.92 0.00 2.13 0.00 19.79 8.81