Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 Z83843.2 Gene 0 54.40 54.53 33.47 98.57 60.89 70.70 45.80 62.35 86.70 54.67 37.42 39.62 62.92 38.57 42.61 46.31 30.22 70.75 61.73 75.54 52.22 84.08 98.62 2 500433 Transcript 0 21.94 28.87 17.02 50.69 30.59 28.13 33.40 30.98 41.83 24.81 14.76 24.67 33.68 15.43 17.35 24.09 18.56 32.48 31.59 60.16 25.64 31.26 43.91 3 IG50 Intergenic 0 21.23 42.02 25.30 71.07 31.00 10.95 59.14 64.61 67.93 30.01 7.62 40.36 47.78 3.91 21.65 26.27 24.84 18.36 42.61 129.86 10.00 7.71 33.32 4 IG50_SR1 SilentIntergenicRegion 0 25.47 50.06 22.40 63.68 34.64 13.33 61.07 65.97 62.94 30.65 8.46 30.08 40.42 2.80 24.74 23.90 24.95 18.01 45.14 107.81 7.02 10.00 31.76 5 IG50_AR1 ActiveIntergenicRegion 0 16.23 32.53 28.93 80.37 26.77 8.13 57.13 63.31 74.29 29.39 6.64 52.96 56.91 5.28 18.02 29.26 24.83 18.87 39.78 157.14 13.64 5.00 35.38 6 ER1a ExonRegion 0 6.98 29.77 15.94 48.85 27.80 7.79 55.31 27.32 33.84 16.16 3.71 33.85 35.54 4.54 6.00 23.86 24.99 22.12 30.08 107.97 21.85 2.03 26.35 7 E1_Da NovelBoundary 0 14.37 31.64 35.48 75.91 4.33 13.34 80.60 27.23 46.99 12.38 2.58 50.57 13.15 4.94 8.90 7.09 17.30 38.88 44.05 116.71 24.77 3.00 18.95 8 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 I1 Intron 0 26.52 62.09 42.89 97.39 36.23 13.11 67.51 69.22 78.32 42.23 6.33 40.13 54.65 8.80 15.23 25.24 28.60 25.34 37.58 141.20 17.02 10.96 37.44 10 I1_SR1 SilentIntronRegion 0 11.29 22.94 23.74 52.56 20.06 7.75 60.40 37.27 46.04 24.84 2.43 35.92 39.23 5.28 5.32 15.79 25.85 15.13 24.54 110.23 13.70 4.77 23.20 11 I1_AR1 ActiveIntronRegion 0 17.16 36.24 22.49 62.64 23.28 8.25 56.33 48.75 55.36 27.48 4.63 22.56 18.43 7.66 13.68 34.58 42.74 39.04 43.78 138.93 32.73 4.79 48.53 12 I1_SR2 SilentIntronRegion 0 17.30 48.06 26.86 45.41 13.42 4.56 51.10 52.90 60.43 30.10 4.28 28.30 26.04 11.67 11.88 37.23 33.19 37.81 44.54 153.33 50.60 5.98 56.52 13 I1_AR2 ActiveIntronRegion 0 19.29 46.03 23.96 60.87 25.15 13.96 72.30 55.97 69.11 37.09 4.81 43.85 72.71 7.02 12.66 28.01 40.35 32.40 48.95 154.41 28.57 6.18 38.92 14 I1_AR3 ActiveIntronRegion 0 21.65 31.05 36.74 82.28 36.02 16.18 80.86 66.31 68.61 44.01 5.26 42.11 48.75 7.50 24.94 23.88 31.34 17.35 35.32 109.63 12.62 8.22 32.62 15 I1_SR3 SilentIntronRegion 0 15.45 30.82 17.53 69.85 25.03 12.33 67.88 44.14 60.85 35.19 4.11 26.77 50.19 5.38 17.18 22.76 29.50 17.65 32.26 132.63 11.14 6.70 33.60 16 I1_AR4 ActiveIntronRegion 0 12.34 41.95 23.92 92.56 19.60 8.72 73.59 53.52 83.35 42.70 6.03 59.54 97.11 6.07 16.15 24.96 37.24 20.95 40.97 169.31 12.31 7.57 28.68 17 I1_SR4 SilentIntronRegion 0 8.08 32.29 19.45 66.07 20.43 8.96 68.77 46.59 67.30 35.44 6.04 53.70 57.71 4.85 6.58 21.01 25.39 16.03 27.00 133.14 9.78 7.62 31.56 18 I1_AR5 ActiveIntronRegion 0 16.99 43.94 20.93 59.22 22.70 7.44 60.72 60.13 77.98 38.76 6.06 35.60 60.15 7.18 11.15 24.41 28.76 14.32 26.96 154.42 10.36 4.80 27.47 19 I1_SR5 SilentIntronRegion 0 24.75 71.72 36.28 63.61 27.62 9.12 51.08 69.33 81.46 38.29 4.69 33.75 45.61 7.11 15.09 19.81 21.29 11.75 29.38 137.27 9.83 7.29 33.14 20 I1_AR6 ActiveIntronRegion 0 33.52 39.23 32.95 52.78 17.80 9.89 41.12 54.78 72.29 26.55 7.35 9.04 15.99 6.84 13.88 40.47 15.60 36.39 31.28 156.46 27.22 5.95 54.87 21 I1_AR7 ActiveIntronRegion 0 29.89 60.55 19.33 51.74 31.49 16.26 72.56 48.38 62.00 20.74 4.53 12.46 27.60 5.70 14.26 16.23 20.74 14.46 32.37 106.35 12.88 8.17 47.03 22 I1_AR8 ActiveIntronRegion 0 0.00 4.07 0.00 4.77 0.00 13.75 8.61 7.78 8.03 6.31 0.00 10.82 0.00 0.00 0.00 4.46 0.00 0.00 6.37 23.40 3.31 0.00 10.28 23 I1_SR6 SilentIntronRegion 0 14.06 31.11 17.01 64.62 18.42 6.98 34.41 58.97 72.69 28.70 7.35 45.43 27.01 7.56 11.91 28.35 24.21 13.53 26.80 110.98 27.86 6.97 40.20 24 I1_AR9 ActiveIntronRegion 0 17.07 37.38 34.07 83.65 40.02 11.25 79.21 70.93 113.76 49.44 6.22 46.84 51.23 5.75 9.97 25.15 20.61 24.90 30.98 171.54 12.65 8.65 39.27 25 I1_SR7 SilentIntronRegion 0 46.62 128.29 85.87 189.67 67.25 15.69 63.53 111.21 114.67 60.68 5.17 32.71 53.17 9.98 23.59 26.18 18.37 26.14 38.55 132.40 11.04 15.88 36.59 26 I1_AR10 ActiveIntronRegion 0 42.83 74.56 51.64 81.58 50.46 7.86 41.61 53.83 28.17 28.40 2.12 11.13 22.56 8.20 10.36 13.73 11.79 12.93 15.93 50.76 4.51 14.49 16.50 27 I1_AR11 ActiveIntronRegion 0 167.16 240.68 260.91 479.98 169.35 41.54 120.29 264.97 184.05 112.57 10.22 50.47 60.73 15.69 34.99 41.12 26.59 46.42 72.54 170.99 21.54 38.62 60.03 28 I1_AR12 ActiveIntronRegion 0 107.63 191.98 194.70 310.13 87.38 23.24 103.06 184.00 171.82 93.79 15.85 42.95 64.06 21.33 41.99 40.78 36.43 66.50 72.68 225.91 26.62 27.96 68.75 29 I1_SR9 SilentIntronRegion 0 27.14 60.40 51.27 98.63 40.43 14.60 58.83 67.39 73.79 43.96 10.54 34.33 48.17 17.73 15.62 24.75 26.03 39.36 48.36 133.91 26.77 19.81 43.71 30 I1_AR13 ActiveIntronRegion 0 18.38 107.92 14.60 69.99 43.52 19.72 68.62 51.13 45.16 27.10 10.12 38.86 46.52 13.06 10.21 19.25 15.92 24.84 26.78 109.68 12.15 18.67 44.12 31 I1_SR10 SilentIntronRegion 0 15.23 77.68 24.92 100.37 36.81 24.06 68.64 54.51 43.24 44.31 18.41 78.28 96.66 21.80 12.57 34.89 41.90 43.82 47.51 175.38 21.21 35.05 54.99 32 I1 Intron 0 27.37 84.90 39.82 119.66 69.12 46.00 85.72 51.28 44.12 40.83 30.12 57.22 83.67 46.07 16.77 50.53 46.30 99.12 67.50 191.30 46.37 48.25 80.68 33 I1_SR1 SilentIntronRegion 0 23.62 96.23 37.43 93.22 61.49 28.18 95.66 31.56 30.73 29.10 21.05 30.74 64.63 32.09 11.10 29.08 31.84 77.70 47.35 178.68 45.25 27.27 62.56 34 I1_AR1 ActiveIntronRegion 0 31.52 79.74 45.76 139.40 75.19 45.15 85.99 55.89 49.23 40.83 30.76 75.34 126.25 55.47 18.87 52.18 53.63 116.55 81.75 220.70 49.25 39.13 84.96 35 I1_AR2 ActiveIntronRegion 0 18.06 68.46 30.09 92.08 44.91 30.79 66.78 41.42 31.99 29.45 24.80 40.05 56.03 40.10 15.13 41.41 38.41 111.17 62.04 175.30 54.21 30.06 74.82 36 I1_SR3 SilentIntronRegion 0 26.04 76.98 45.71 122.27 67.77 47.27 79.49 59.61 55.36 48.71 34.62 61.14 86.29 48.77 18.40 59.30 51.26 93.87 72.14 220.99 49.14 59.15 90.94 37 I1_AR3 ActiveIntronRegion 0 33.45 85.77 35.21 118.30 67.16 56.22 83.05 47.65 46.11 38.20 31.68 57.83 80.25 55.14 21.78 72.51 64.65 178.45 93.82 208.31 71.33 55.09 113.03 38 I1_AR5 ActiveIntronRegion 0 30.85 117.34 46.27 143.82 88.69 58.56 108.62 62.98 47.30 49.52 35.75 61.59 76.02 48.25 15.24 55.61 47.76 98.93 69.02 197.16 46.32 55.91 84.98 39 I1_SR5 SilentIntronRegion 0 15.39 15.02 6.53 36.09 23.16 17.56 38.04 7.43 12.54 12.23 8.03 27.52 55.83 19.04 13.78 9.60 13.33 8.50 15.80 47.63 5.59 35.82 19.31 40 I1 Intron 0 128.75 102.58 43.69 109.41 140.91 84.68 85.82 68.55 94.54 58.64 58.97 89.60 103.07 54.35 30.70 57.61 50.21 65.64 87.13 100.03 74.36 121.90 113.83 41 I1_SR1 SilentIntronRegion 0 54.39 40.06 7.72 13.36 57.26 25.12 26.35 4.84 10.62 13.65 8.12 8.66 13.13 8.28 1.74 14.27 10.23 7.02 18.48 17.23 14.10 29.59 27.90 42 I1_AR2 ActiveIntronRegion 0 130.36 103.92 44.43 111.39 142.73 85.94 87.08 69.86 96.28 59.58 60.02 91.26 104.93 55.30 31.29 58.52 51.04 66.85 88.57 101.75 75.61 123.84 115.62 43 E2_Aa NovelBoundary 0 97.50 53.48 34.68 162.92 118.76 117.38 108.20 101.58 124.48 78.06 56.38 63.47 119.31 81.94 55.75 76.48 88.83 190.35 151.91 103.48 203.19 119.10 178.58 44 ER2a ExonRegion 0 58.84 56.84 35.11 103.23 63.98 76.59 44.91 65.63 91.64 58.27 40.57 40.16 65.48 41.75 46.04 48.41 30.71 75.30 64.69 72.50 55.06 91.76 105.38