Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ARMCX6 Gene 0 26.26 14.14 16.40 12.53 15.03 23.92 11.70 11.83 14.87 8.45 30.24 5.94 3.52 18.39 18.02 33.40 22.75 16.95 14.24 7.64 37.27 39.61 44.26 2 395128 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 361910 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 467089 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 495964 Transcript 0 0.00 11.97 0.00 0.00 8.57 2.50 0.00 4.44 15.31 3.33 23.27 5.70 8.28 0.00 10.63 7.95 4.68 6.59 0.00 2.81 11.06 17.33 7.17 6 494624 Transcript 0 7.33 3.47 4.18 2.74 3.18 7.31 2.29 5.00 2.33 3.98 4.03 1.82 0.74 6.16 3.90 3.34 6.42 3.66 1.82 4.67 8.27 12.87 8.30 7 462302 Transcript 0 3.70 0.00 5.29 6.49 4.33 7.84 0.00 2.01 6.94 0.00 2.68 0.00 0.00 2.35 0.00 0.00 0.00 4.31 0.00 6.14 18.29 2.45 3.33 8 497931 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 ER1a ExonRegion 0 2.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.93 0.00 0.00 1.62 0.00 0.00 0.00 0.00 0.00 2.13 0.00 2.08 0.00 10 ER1b ExonRegion 0 38.19 13.64 11.28 7.95 10.15 30.56 14.67 1.80 7.57 2.29 28.19 0.00 0.00 27.20 20.67 39.75 26.82 3.62 8.36 5.94 21.39 19.79 36.22 11 ER1c ExonRegion 0 162.43 73.41 53.15 45.99 85.67 144.57 61.65 17.87 41.89 20.98 125.54 0.21 1.13 112.33 90.92 194.19 102.49 61.84 58.62 26.39 165.06 157.57 192.49 12 E1_Da NovelBoundary 0 3.78 0.00 9.96 4.13 11.63 12.89 11.17 5.09 5.24 11.87 6.95 0.00 0.00 11.54 0.00 12.99 9.54 14.43 18.07 3.26 11.43 21.31 20.74 13 E1a_E2a KnownJunction 0 440.89 319.42 143.70 135.18 367.49 472.63 207.21 119.90 178.53 88.40 419.69 95.28 47.40 187.53 168.86 527.04 333.33 259.04 354.46 132.24 512.13 746.99 777.91 14 E1a_E3a KnownJunction 0 7.56 6.31 5.00 5.46 11.04 16.98 8.48 2.30 1.36 0.00 0.00 0.00 0.00 2.12 13.35 0.00 0.00 14.30 3.48 0.00 6.30 2.88 4.01 15 ER1d ExonRegion 0 306.89 213.53 110.28 110.39 259.55 322.75 137.69 69.14 116.10 58.49 317.00 8.66 14.07 173.78 165.37 359.63 244.27 203.25 213.42 95.74 451.76 383.37 572.65 16 ER1e ExonRegion 0 295.61 212.85 107.02 110.39 247.95 325.80 130.19 71.44 118.16 58.11 317.64 23.09 14.07 169.99 169.24 354.67 237.66 206.95 208.11 95.74 445.88 361.84 573.62 17 ER1f ExonRegion 0 322.30 236.46 115.38 106.80 285.88 384.44 162.42 90.43 133.74 68.03 370.88 43.29 22.32 184.82 182.31 437.85 284.93 222.84 263.37 109.53 497.33 543.22 670.85 18 I1 Intron 0 0.39 1.11 4.99 2.59 1.95 2.00 1.69 1.88 2.68 3.11 3.87 1.95 0.70 4.84 0.75 7.58 2.40 2.34 4.06 3.88 2.01 5.69 10.70 19 I1_AR1 ActiveIntronRegion 0 0.39 1.12 5.02 2.61 1.96 2.02 1.70 1.89 2.70 3.13 3.90 1.96 0.71 4.87 0.75 7.63 2.42 2.36 4.09 3.90 2.02 5.73 10.77 20 E2_Aa NovelBoundary 0 13.48 2.63 14.37 8.42 11.63 49.23 10.86 1.68 8.42 7.41 6.95 6.30 6.82 2.41 4.45 11.28 8.42 0.00 0.00 9.27 6.30 24.25 3.24 21 ER2a ExonRegion 0 104.23 57.59 123.52 81.37 81.45 99.96 53.43 87.96 119.90 59.12 222.71 43.19 27.17 93.21 79.36 185.14 175.19 109.22 89.15 41.28 256.49 203.98 256.60 22 E2_Da KnownBoundary 0 6.82 2.83 13.16 7.42 0.00 7.84 0.00 7.11 3.94 4.94 15.42 6.30 0.00 15.30 4.45 8.29 22.25 7.30 0.00 11.57 36.45 10.59 7.94 23 E2a_E2b KnownJunction 0 0.00 0.00 7.89 2.03 0.00 0.00 0.00 5.67 5.61 0.00 12.48 0.00 0.00 2.35 0.00 0.00 8.79 2.57 0.00 0.00 2.41 0.00 0.00 24 E2a_E3a KnownJunction 0 29.49 11.91 118.77 75.58 28.61 11.36 15.19 87.78 103.18 62.78 238.48 42.76 44.64 165.05 120.65 115.70 179.15 36.73 36.14 34.90 368.13 122.59 86.64 25 ER2b ExonRegion 0 6.97 5.21 7.15 4.50 5.07 10.85 3.01 9.37 4.08 7.00 7.60 3.65 1.48 10.53 5.72 5.97 11.64 5.89 2.49 8.83 15.26 21.38 14.09 26 E2_Ab KnownBoundary 0 20.60 3.16 9.31 6.76 33.79 17.55 12.90 8.30 5.47 12.09 2.68 0.00 0.00 19.60 13.35 7.78 14.03 10.78 0.00 8.76 13.65 19.66 11.52 27 ER2c ExonRegion 0 6.97 7.38 9.69 9.14 7.75 13.00 6.31 8.60 14.06 10.47 22.80 2.44 1.50 15.76 10.86 8.23 14.64 8.29 4.08 6.87 24.41 23.03 13.10 28 E2_Db KnownBoundary 0 9.85 0.00 0.00 5.86 0.00 14.54 6.54 5.91 2.26 4.92 1.95 0.00 0.00 2.12 8.90 0.00 0.00 1.66 0.00 0.00 7.48 10.53 0.00 29 E2b_E3a KnownJunction 0 0.00 11.97 0.00 0.00 8.57 2.50 0.00 4.44 15.31 3.33 23.27 5.70 8.28 0.00 10.63 7.95 4.68 6.59 0.00 2.81 11.06 17.33 7.17 30 E2_Dc KnownBoundary 0 10.45 0.00 4.02 3.56 0.00 5.45 4.24 2.01 6.42 3.09 0.00 0.00 11.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.81 0.00 4.10 31 E2c_E3a KnownJunction 0 3.70 0.00 5.29 6.49 4.33 7.84 0.00 2.01 6.94 0.00 2.68 0.00 0.00 2.35 0.00 0.00 0.00 4.31 0.00 6.14 18.29 2.45 3.33 32 ER2d ExonRegion 0 2.12 0.00 7.76 8.93 2.68 16.71 7.06 7.87 9.61 6.37 3.87 0.48 0.00 3.25 11.61 0.00 0.37 4.93 0.00 4.26 24.24 7.87 12.40 33 ER2e ExonRegion 0 7.69 1.72 1.20 0.99 1.30 3.77 1.58 0.63 0.58 0.96 0.47 0.00 0.00 1.80 2.08 0.72 1.20 1.42 1.16 0.52 1.27 4.36 2.50 34 E2_Dd NovelBoundary 0 97.42 45.32 39.00 15.75 17.49 17.21 0.00 33.60 35.50 12.28 38.38 38.86 54.54 29.20 13.72 38.79 17.39 25.25 18.17 15.72 29.10 86.40 33.97 35 E3_Aa NovelBoundary 0 39.86 2.83 23.42 8.29 38.37 17.04 15.85 24.23 18.63 13.81 23.48 5.40 41.56 17.84 13.60 16.24 9.07 14.34 4.52 12.46 16.68 40.72 17.93 36 ER3a ExonRegion 0 17.24 7.92 111.24 90.77 20.70 11.81 11.19 88.19 111.02 59.07 236.89 34.73 23.06 134.56 128.54 222.78 166.37 105.22 93.58 51.42 286.90 328.58 257.13 37 E3_Da KnownBoundary 0 0.00 0.00 41.99 38.42 8.15 10.39 4.15 36.72 41.41 30.78 22.69 32.71 6.82 50.62 28.06 85.70 18.33 119.76 99.58 32.66 33.30 222.16 131.72 38 E3a_E3b KnownJunction 0 88.98 15.85 64.63 73.65 86.67 16.07 21.95 71.63 65.80 34.73 170.20 122.44 44.64 128.20 186.29 373.15 125.95 70.60 93.37 16.81 161.42 387.98 452.08 39 ER3b ExonRegion 0 7.68 29.75 13.12 8.90 20.27 58.28 18.92 8.12 6.47 5.83 2.71 2.56 0.87 4.13 4.45 6.62 2.86 21.64 9.74 4.61 5.36 16.28 21.46 40 E3_Db KnownBoundary 0 27.34 32.95 8.96 3.63 8.15 2.90 0.00 8.71 4.25 9.32 2.37 5.40 11.85 0.00 0.00 3.85 4.68 9.16 0.00 4.99 2.97 0.00 0.00 41 ER3c ExonRegion 0 14.38 5.58 0.00 0.00 0.00 0.00 0.18 0.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 1.43 0.00 0.00 42 E3_Dc KnownBoundary 0 10.82 5.85 4.14 5.76 20.54 0.00 2.25 0.00 0.00 0.00 7.48 16.21 0.00 0.00 0.00 0.00 8.42 2.07 3.95 0.00 0.00 2.76 4.35 43 ER3d ExonRegion 0 0.35 0.02 0.11 0.14 0.14 0.08 0.13 0.15 0.14 0.06 0.34 0.24 0.10 0.32 0.33 0.85 0.28 0.15 0.18 0.07 0.60 0.94 1.08 44 E3_Ab KnownBoundary 0 6.30 14.54 14.13 8.66 11.71 5.74 1.68 4.81 2.78 2.42 2.11 5.70 20.78 3.00 0.00 7.69 0.00 2.49 0.00 2.68 5.37 3.12 4.18 45 ER3e ExonRegion 0 51.59 18.91 19.13 16.82 25.11 31.35 26.72 18.24 19.31 8.53 40.66 19.14 11.60 26.94 36.01 67.95 25.07 16.69 13.77 4.60 47.38 52.00 85.21 46 E3_Dd KnownBoundary 0 133.21 17.37 21.35 10.75 27.16 9.99 3.71 9.36 5.58 4.49 21.90 0.00 6.82 5.18 0.00 0.00 9.35 4.73 7.53 0.00 2.59 5.76 10.67 47 ER3f ExonRegion 0 32.05 5.49 6.48 3.19 3.31 3.82 3.47 2.33 3.64 3.33 3.71 1.31 0.44 2.51 4.66 1.55 2.47 1.67 1.25 3.49 2.66 2.43 3.07 48 ER3g ExonRegion 0 15.52 1.36 4.08 0.45 8.47 3.06 3.31 2.59 1.65 2.87 7.09 6.49 4.69 8.66 10.15 2.97 8.80 1.85 0.53 10.28 0.73 3.47 6.85