Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RPS4X Gene 0 6128.89 7824.61 7791.26 4303.11 2641.85 1261.80 1097.49 1991.60 630.55 1501.65 5473.52 3984.98 2848.07 1998.79 3579.12 2188.52 2357.95 1345.11 2981.04 1719.89 2389.62 1968.06 1617.21 2 316084 Transcript 0 5805.82 22685.58 8456.02 4047.47 2272.99 2250.48 2098.78 2315.22 754.25 1892.57 7157.25 5570.13 3174.83 2759.59 4188.30 2001.14 2995.17 1193.39 2978.90 2019.39 3125.98 2272.89 1322.41 3 373626 Transcript 1 23.49 9.87 1.51 2.06 20.46 2.90 6.45 2.42 4.40 1.34 16.37 67.37 12.66 19.01 27.81 20.08 3.65 0.00 0.00 0.00 0.00 6.25 12.98 4 486733 Transcript 0 181.01 123.75 91.25 47.89 83.02 35.56 29.01 62.61 27.59 32.26 138.18 154.39 68.51 91.30 91.07 66.66 62.67 16.46 32.41 28.00 34.85 50.97 40.53 5 470671 Transcript 0 29.07 35.73 102.31 96.19 6.40 5.35 1.59 34.57 5.27 0.38 0.19 0.87 5.08 0.00 0.00 2.39 0.80 5.83 8.76 6.30 0.97 0.00 2.09 6 492695 Transcript 0 18.67 77.68 207.56 104.48 30.31 21.35 0.00 40.87 14.79 7.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.97 8.66 9.08 0.00 0.00 4.35 7 ER1a ExonRegion 0 33.03 34.34 9.09 3.96 23.63 4.36 19.13 5.41 3.52 6.62 33.84 0.33 1.06 21.05 31.15 31.96 22.67 22.84 6.07 27.06 9.44 11.99 8.81 8 E1_Ab KnownBoundary 0 153.21 128.53 26.73 16.91 96.60 22.20 78.34 9.90 4.80 21.03 118.50 6.00 12.50 73.64 140.06 95.45 60.21 67.53 19.58 72.48 30.02 38.03 32.61 9 ER1b ExonRegion 1 11656.85 11371.52 2809.31 1596.68 3455.07 2688.65 2422.73 941.91 361.82 908.45 6415.54 58.41 71.54 2225.22 4713.64 3131.05 3051.89 1417.39 3362.59 2035.16 3196.22 1372.77 2030.61 10 E1a_E2a KnownJunction 1 79915.28 71121.15 13376.32 8476.68 21267.33 16838.71 14197.03 5049.93 1738.21 4188.77 31868.18 276.24 499.64 9252.44 21565.79 15402.45 14868.24 6913.47 18460.77 10926.71 15645.30 6303.38 11616.64 11 E2_Ab NovelBoundary 0 71504.97 65425.72 11953.98 6867.69 14529.72 13317.27 12445.85 3960.98 1435.34 3803.97 25652.76 40.36 74.35 1531.35 6089.39 11759.74 12968.66 4858.00 15053.23 9409.44 14885.63 6534.72 9284.43 12 ER2a ExonRegion 1 62948.39 61654.05 15158.76 8636.77 17039.16 13983.63 11380.27 5038.66 1877.53 4779.58 30666.89 181.84 232.16 7527.39 17844.88 13833.76 14285.45 6614.25 16115.55 9729.49 15388.23 6656.06 10283.76 13 ER2b ExonRegion 1 37788.47 37936.01 17238.06 9434.44 10626.42 8231.87 6782.01 5439.25 1937.61 4947.16 17531.89 972.27 712.55 3187.61 7224.87 8110.00 8272.09 6031.90 10551.70 5795.82 8985.59 4187.96 6375.95 14 E2a_E3a KnownJunction 1 5652.63 4437.89 7863.09 3444.85 1051.44 509.88 535.83 1786.43 590.10 1533.12 1361.98 1961.29 1571.16 437.76 1074.23 553.36 718.09 1265.12 854.52 607.60 743.68 657.34 356.82 15 ER3a ExonRegion 1 6786.98 5458.49 21864.12 11812.61 3292.14 1375.97 893.27 6685.51 2168.66 5148.69 20249.44 6434.54 4384.48 5571.80 10640.56 9088.78 8444.00 4797.83 10703.33 6593.95 8428.20 6210.02 6820.33 16 E3a_E4a KnownJunction 0 15911.26 11224.38 34734.20 17686.06 14148.06 4832.22 3065.07 9083.44 2736.98 5754.39 19423.81 9351.35 6740.14 5469.45 9948.60 6167.36 7491.44 6075.91 9152.92 6897.75 7321.67 8817.20 6220.84 17 ER4a ExonRegion 0 13342.13 25567.40 25667.82 12021.16 11935.52 9781.18 8010.38 7476.25 2355.43 5527.70 20873.04 12682.99 6977.33 6555.06 10004.38 5202.71 8157.76 3445.39 7594.30 5561.12 8106.23 6517.27 4174.41 18 E4_Da KnownBoundary 0 20.00 5.99 25.84 11.99 30.73 14.25 16.83 45.43 10.47 17.11 122.24 79.83 56.33 41.26 33.01 14.78 21.41 14.05 18.07 17.13 16.93 18.74 43.45 19 E4a_E4b KnownJunction 0 23.49 9.87 1.51 2.06 20.46 2.90 6.45 2.42 4.40 1.34 16.37 67.37 12.66 19.01 27.81 20.08 3.65 0.00 0.00 0.00 0.00 6.25 12.98 20 E4a_E4c KnownJunction 0 15421.33 66310.62 24959.59 11867.89 6170.72 6590.18 6108.41 6831.27 2225.09 5586.91 21164.73 16176.17 8908.67 7962.60 12024.51 5839.84 8776.61 3501.24 8667.26 5950.69 9186.17 6739.36 3860.63 21 ER4b ExonRegion 0 102.84 16.77 34.53 21.42 67.67 24.31 18.37 44.87 20.98 21.09 91.66 97.55 63.57 77.89 50.57 48.54 37.46 7.80 14.93 19.03 15.93 40.48 31.36 22 E4_Ab KnownBoundary 0 187.29 21.64 67.41 32.93 58.66 7.95 18.42 60.75 23.76 22.21 105.61 172.26 123.53 110.13 84.80 56.82 42.64 9.70 18.92 22.56 24.59 38.88 58.39 23 ER4c ExonRegion 0 218.69 27.96 51.60 34.49 77.34 24.58 24.07 47.66 26.37 27.37 116.66 194.30 118.37 104.98 92.71 62.84 56.06 9.74 18.74 20.15 22.80 39.25 35.09 24 E4_Db KnownBoundary 0 202.26 25.52 58.66 39.16 111.97 26.06 32.15 40.42 32.90 29.95 81.49 180.21 68.83 127.08 115.58 54.69 58.06 9.49 16.85 18.15 26.50 36.19 43.54 25 ER4d ExonRegion 0 259.18 230.74 147.97 74.37 98.37 46.82 39.66 80.34 34.19 43.44 184.70 211.23 73.45 104.70 131.58 84.78 87.88 25.11 49.89 36.97 53.78 61.45 49.69 26 E4_Ac KnownBoundary 0 293.01 47.16 59.84 23.64 89.22 25.27 25.08 52.00 21.82 16.36 90.97 151.10 61.36 90.18 116.45 65.03 52.64 12.35 4.80 16.23 17.24 27.92 27.57 27 ER4e ExonRegion 0 37075.60 46525.72 35174.21 17149.41 9459.99 3850.92 3418.27 9343.15 2820.97 6724.64 24380.98 21318.11 12543.83 9261.35 15818.67 8871.36 9484.90 6356.84 12599.21 7096.75 9483.41 10034.16 6322.44 28 E4c_E5a KnownJunction 0 15913.41 36662.81 36807.84 18990.72 17658.16 4257.66 4479.25 8978.83 2683.71 6881.76 24921.00 23851.32 19947.07 8457.87 15056.59 7215.80 10179.98 4856.97 10771.23 7462.91 10216.80 8433.57 5166.52 29 E5_Ab NovelBoundary 1 6324.90 14624.96 30384.23 15691.31 9865.80 2940.64 3726.71 6221.44 1726.54 4454.09 12813.03 18484.82 17533.43 5145.06 9689.25 5482.15 5246.93 3477.07 6693.56 5255.85 5712.74 5568.21 4217.02 30 ER5a ExonRegion 0 10543.48 26408.70 36761.77 19132.61 14547.47 3936.59 4174.31 8502.63 2542.78 6496.61 22967.11 25054.17 22490.43 7856.98 13898.07 7566.41 9151.30 5224.17 10043.28 7076.12 9578.83 8058.28 5520.73 31 ER5b ExonRegion 0 9851.17 12092.06 38614.15 22866.92 9597.04 3134.78 2871.52 8118.91 2478.37 6142.55 19409.60 23133.74 15688.56 9484.31 17209.61 8479.77 8688.93 5305.94 12595.25 6741.76 8754.53 8286.11 5941.57 32 E5a_E6a KnownJunction 0 9620.45 10879.90 34038.10 19110.49 4006.79 2001.52 2341.99 7099.69 2128.07 5362.88 15609.80 9338.74 4572.43 5657.22 10430.34 5209.40 7552.21 3339.36 9137.30 5681.73 7359.72 7560.56 3330.87 33 ER6a ExonRegion 0 11751.45 32011.79 31317.25 21631.22 7696.04 2938.22 3155.93 5804.70 1775.70 4222.42 12909.25 11699.60 11555.77 4647.16 9306.70 4897.17 6555.12 2930.83 7518.35 4817.34 7320.15 6348.19 3897.04 34 E6_Ab KnownBoundary 1 6167.39 19639.00 25527.46 21918.59 5251.87 2019.80 2566.16 4159.94 1241.02 2668.55 4491.30 9282.02 9844.16 2494.27 5742.52 2185.32 2229.73 1806.41 3117.55 2849.75 2913.79 2840.50 2074.49 35 E6_Da KnownBoundary 1 33044.60 75125.57 6107.47 3299.35 18364.02 5135.79 5018.74 1041.19 350.40 696.72 8482.99 13725.12 18757.37 4080.60 12809.85 5290.32 5976.90 840.22 8686.93 3004.56 5528.21 4161.80 4747.55 36 ER6b ExonRegion 1 23170.36 63528.81 25756.32 19254.16 15439.33 5192.22 5138.82 4104.73 1294.40 2897.77 10086.25 18978.65 23126.55 5564.07 12829.63 5679.73 6291.51 2226.54 9045.48 4515.94 6758.12 5701.13 5256.88 37 ER6c ExonRegion 1 18102.44 42890.52 18009.17 13052.39 11576.15 3661.88 3429.57 2833.75 942.17 2049.01 7010.23 13879.63 16573.74 4198.16 8377.45 4113.51 4463.39 1740.74 6988.59 2751.87 4514.75 3913.22 3432.59 38 E6_Db KnownBoundary 1 7346.19 11568.27 4869.61 3017.50 4658.66 1202.15 1335.48 908.72 343.98 815.53 3177.65 7477.09 8403.83 2278.78 3805.68 1634.36 1724.07 488.94 2889.49 1222.54 1802.42 1682.15 984.66 39 E6b_E7a KnownJunction 0 24.15 41.31 156.12 162.82 3.90 5.17 0.00 57.46 5.82 0.00 0.00 0.00 8.28 0.00 0.00 3.50 0.00 5.60 3.95 8.50 0.00 0.00 4.18 40 ER6d ExonRegion 1 31553.79 28172.06 9204.89 6098.98 10576.34 2478.68 2772.24 1503.71 561.41 1255.65 5179.72 8787.93 9853.40 3775.62 5825.27 2387.84 3217.95 1167.87 4140.65 1243.04 3346.42 1675.52 1601.22 41 E6_Dc KnownBoundary 1 87204.12 67129.49 8407.66 6013.65 24727.60 5299.96 6452.17 1458.54 501.67 1139.54 9026.76 17214.36 20093.00 9234.67 17170.20 4454.39 6101.16 1127.57 7157.66 1850.72 5889.11 2334.83 3148.62 42 E6c_E7a KnownJunction 0 18.67 77.68 207.56 104.48 30.31 21.35 0.00 40.87 14.79 7.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.97 8.66 9.08 0.00 0.00 4.35 43 ER6e ExonRegion 1 1963.10 1711.76 399.40 270.57 624.63 156.89 168.81 108.99 34.14 84.17 273.17 533.89 614.75 295.13 509.26 131.62 186.22 56.09 263.38 80.42 182.34 67.32 97.79 44 ER7a ExonRegion 0 73.95 90.63 317.17 230.56 35.62 10.10 3.31 86.94 26.05 10.64 2.49 7.27 2.86 0.83 2.28 2.63 0.23 20.49 29.39 21.32 3.68 0.92 5.54 45 E7_Da KnownBoundary 0 156.32 125.57 137.31 117.37 31.24 22.77 14.22 32.24 14.41 3.73 2.68 0.00 0.00 0.00 0.00 0.00 0.00 15.05 54.78 11.19 0.00 0.00 0.00 46 ER7b ExonRegion 0 33.99 30.16 48.51 29.57 8.89 5.54 3.18 11.67 4.73 0.76 0.39 1.73 1.88 0.00 0.00 1.27 1.60 6.07 13.56 4.09 1.93 0.00 0.00