Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DIAPH2 Gene 0 19.34 11.63 27.52 11.51 14.68 24.84 14.38 20.75 12.40 10.64 40.49 61.81 59.99 33.34 18.32 17.61 27.75 3.88 2.72 11.80 50.43 64.08 34.70 2 373054 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 2.35 0.00 0.00 0.00 0.74 0.00 0.00 0.28 0.00 0.00 0.00 3 355827 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 373061 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 373049 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 324765 Transcript 0 15.35 11.22 25.28 13.50 14.07 26.49 10.02 22.46 10.90 9.70 21.51 18.74 13.33 12.95 11.13 7.13 7.16 2.59 1.92 6.10 43.18 58.92 31.11 7 ER1a ExonRegion 0 3.47 0.00 1.94 0.00 0.00 0.00 2.30 0.00 0.00 0.00 2.32 0.00 0.00 1.07 0.75 0.18 2.05 0.00 0.00 0.00 1.32 1.29 0.29 8 E1_Ab KnownBoundary 0 7.11 0.00 3.58 0.00 0.00 0.00 2.03 2.30 1.65 0.00 6.79 0.00 0.00 2.41 4.45 0.00 4.77 0.00 0.00 0.00 3.15 3.12 0.00 9 ER1b ExonRegion 0 2.12 1.57 7.86 0.98 1.25 4.13 5.24 2.06 1.62 2.82 18.71 4.91 5.47 17.58 10.72 11.05 22.68 3.10 2.13 6.20 45.49 9.52 20.38 10 E1a_E2a KnownJunction 0 0.00 3.09 10.70 7.59 12.22 13.00 28.84 2.55 4.69 3.22 31.64 17.86 0.00 6.47 0.00 3.16 0.00 7.05 8.38 11.70 53.31 45.56 47.12 11 E1a_E3a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.32 2.31 0.00 48.80 31.66 67.20 33.14 9.64 35.20 36.19 2.03 3.67 2.56 0.00 0.00 0.00 12 ER2a ExonRegion 1 0.00 6.59 19.27 6.73 6.57 16.56 17.89 5.81 6.44 5.63 34.38 19.55 0.71 6.69 4.92 0.63 0.60 7.39 7.05 15.09 77.33 40.47 42.36 13 E2a_E3a KnownJunction 0 0.00 9.74 20.87 3.60 0.00 4.77 14.66 6.74 6.22 4.94 29.59 26.56 0.00 7.06 9.15 0.00 0.00 4.97 4.42 14.45 92.42 29.39 25.52 14 ER3a ExonRegion 0 13.84 6.85 23.14 5.40 6.61 19.15 10.01 17.86 12.73 11.36 71.52 77.76 58.40 63.56 18.59 32.63 58.82 6.82 5.22 23.96 71.85 61.05 41.54 15 E3a_E4a KnownJunction 1 13.48 9.47 30.48 8.22 7.81 10.85 22.39 26.82 16.03 12.30 87.29 128.59 103.56 103.24 19.53 22.73 125.85 1.91 8.56 27.16 81.79 78.93 38.07 16 ER4a ExonRegion 1 12.50 4.28 23.42 10.80 11.01 6.34 18.79 18.60 11.77 9.59 72.29 172.64 119.08 79.13 19.87 33.91 70.14 4.05 2.09 28.35 95.60 70.52 35.27 17 E4a_E5a KnownJunction 0 2.89 3.09 3.16 1.56 0.00 5.45 0.00 1.60 3.07 4.57 2.32 0.00 6.17 9.71 0.00 12.39 8.79 2.57 9.13 3.26 46.15 22.41 19.97 18 I4_AR3 ActiveIntronRegion 1 10.96 2.89 10.66 4.14 3.65 1.44 3.46 12.19 4.02 4.99 0.75 7.23 18.54 1.16 8.78 5.39 1.85 0.00 0.36 4.04 1.73 4.41 2.31 19 ER5a ExonRegion 1 10.02 7.79 24.82 11.70 17.62 31.96 25.43 22.07 8.48 6.27 87.81 146.77 139.43 112.42 17.70 36.20 63.92 5.91 7.58 21.38 107.79 79.37 50.82 20 E5a_E6a KnownJunction 1 21.19 6.71 16.74 15.25 18.76 29.36 8.08 12.45 21.18 15.98 91.92 327.71 181.64 150.33 28.31 94.16 59.75 10.11 4.52 19.30 96.56 121.61 100.22 21 ER6a ExonRegion 1 12.95 5.23 27.02 13.12 12.63 17.70 13.01 23.85 24.09 14.39 91.46 176.35 166.09 115.81 27.19 69.83 78.34 5.81 7.77 26.87 99.55 110.59 61.51 22 E6a_E7a KnownJunction 0 27.26 8.95 35.78 14.78 23.17 5.51 38.16 26.57 19.79 14.40 110.76 157.55 169.63 63.92 14.09 42.30 76.11 1.99 3.67 25.18 109.90 78.50 51.73 23 ER7a ExonRegion 1 15.27 2.96 25.14 13.88 22.55 21.06 32.25 20.47 25.43 14.29 75.82 125.74 179.29 97.26 22.96 20.80 62.48 3.83 4.46 25.47 89.50 89.26 44.34 24 E7a_E8a KnownJunction 1 11.04 3.35 28.77 14.65 22.92 35.43 48.36 32.98 29.75 20.60 42.64 129.34 279.85 113.31 22.25 24.18 65.64 2.11 4.05 14.64 43.00 111.44 32.10 25 ER8a ExonRegion 1 29.20 8.43 30.71 17.55 21.41 36.60 34.86 27.14 23.65 13.41 85.75 199.53 269.49 98.04 29.61 63.11 66.91 3.40 7.11 26.70 64.26 130.55 65.74 26 E8a_E9a KnownJunction 0 35.27 11.25 35.42 15.98 23.94 48.32 30.25 33.19 24.25 9.54 78.86 214.27 192.03 74.17 31.65 38.37 54.89 2.57 3.76 26.21 67.34 76.05 54.72 27 ER9a ExonRegion 1 24.29 13.60 26.50 15.89 15.37 21.21 22.73 27.16 21.53 11.94 87.78 214.45 244.70 82.87 24.17 37.00 81.58 5.83 6.17 25.59 73.29 112.99 47.66 28 E9a_E10a KnownJunction 1 33.78 8.29 20.79 21.21 23.60 10.68 41.69 21.32 23.15 11.77 105.87 299.50 324.00 75.81 24.60 47.51 68.72 6.26 0.00 15.28 85.50 89.71 45.67 29 E10_Aa NovelBoundary 0 17.34 0.00 0.00 0.00 4.33 6.64 12.06 0.00 0.00 0.00 34.90 29.26 82.30 4.59 14.71 10.00 0.00 0.00 0.00 4.99 16.87 31.05 13.32 30 ER10a ExonRegion 0 20.08 12.40 29.12 14.08 25.60 30.93 35.09 19.70 23.58 12.55 103.82 212.10 260.74 71.11 30.19 43.48 78.78 4.88 4.53 32.07 69.80 92.24 45.21 31 E10a_E11a KnownJunction 1 6.00 23.48 29.69 12.19 6.88 39.75 21.82 26.08 15.16 24.15 80.18 280.74 278.72 69.99 19.90 33.67 89.20 4.02 0.00 31.96 39.11 144.57 38.58 32 ER11a ExonRegion 1 18.48 7.45 35.30 12.46 12.03 33.44 23.62 25.64 27.11 19.82 67.49 260.97 247.19 78.75 32.45 24.75 82.00 8.93 0.05 33.97 36.80 131.79 46.37 33 E11a_E13a KnownJunction 1 29.78 23.94 30.72 9.32 7.56 10.22 34.36 25.92 29.57 12.81 59.75 189.36 172.07 52.80 37.70 7.69 62.37 0.00 0.00 33.49 11.18 74.95 52.41 34 E11b_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 ER11b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 4.69 0.00 0.00 0.00 2.97 0.00 0.00 1.13 0.00 0.00 0.00 36 E12a_E13b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 ER12a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 E13_Ab NovelBoundary 0 31.12 17.23 15.29 4.36 28.69 2.56 15.02 21.81 8.71 12.03 22.27 65.57 71.42 23.13 23.73 14.87 43.95 0.00 4.24 13.68 2.78 51.86 27.74 39 ER13a ExonRegion 1 30.20 18.30 26.63 8.36 18.37 8.19 28.07 27.19 23.88 13.15 61.47 163.94 159.15 51.21 41.58 14.86 70.42 0.00 3.19 28.79 11.90 75.70 44.05 40 ER13b ExonRegion 1 53.99 28.55 39.26 10.18 26.84 24.43 28.06 36.01 26.32 17.05 65.70 226.66 224.39 74.47 36.64 17.31 97.12 5.69 2.12 29.37 27.70 127.54 43.16 41 E13a_E14a KnownJunction 1 31.49 24.47 29.42 7.56 18.25 61.10 17.00 35.28 14.03 11.93 61.07 233.63 262.00 62.39 23.49 15.81 50.40 6.67 4.42 21.03 23.91 113.59 39.61 42 ER14a ExonRegion 1 61.09 30.54 33.18 21.82 14.14 32.70 34.19 31.26 24.14 11.54 73.61 189.62 225.40 66.37 38.84 40.36 63.85 4.86 2.44 29.07 43.00 105.19 52.83 43 E14a_E15a KnownJunction 1 33.64 23.88 51.54 30.23 8.40 25.16 41.60 41.28 23.99 23.93 53.80 133.24 180.51 102.36 33.25 78.10 61.99 13.72 4.80 51.33 67.89 139.12 85.79 44 ER15a ExonRegion 1 10.35 7.79 52.90 23.09 14.08 34.73 25.22 35.98 24.13 22.51 94.89 223.47 307.95 93.92 42.27 66.12 91.82 18.22 2.65 26.94 109.98 108.09 91.80 45 E15a_E16a KnownJunction 1 10.74 11.97 71.26 24.84 32.00 32.48 10.69 46.13 27.60 17.46 93.81 286.74 291.38 124.67 77.38 95.27 91.16 17.78 4.71 31.00 83.21 204.52 81.44 46 ER16a ExonRegion 0 40.66 23.80 56.57 22.33 31.75 42.46 36.18 44.07 26.27 26.89 103.77 162.46 212.53 101.13 41.31 98.99 100.13 20.17 11.13 38.80 163.70 123.54 101.16 47 E16_Da NovelBoundary 0 0.00 0.00 17.59 8.89 0.00 0.00 6.23 5.59 0.00 1.67 0.00 5.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.41 2.94 0.00 48 E16a_E17a KnownJunction 0 9.04 16.51 29.12 9.62 11.46 23.23 23.36 32.90 22.37 14.64 95.39 65.57 106.00 84.05 38.45 41.95 76.95 8.54 9.13 23.65 188.92 73.36 79.47 49 I16_AR2 ActiveIntronRegion 0 10.84 5.93 12.36 5.47 4.08 0.39 3.06 9.29 3.66 1.87 1.55 1.61 2.63 1.23 2.37 2.38 4.59 0.41 1.46 2.77 0.84 2.23 3.54 50 ER17a ExonRegion 0 21.65 10.05 20.67 4.62 10.36 18.96 15.65 17.50 7.99 8.47 48.82 81.03 83.13 59.15 26.26 28.39 43.50 3.63 6.41 8.87 88.18 42.81 37.31 51 E17a_E18a KnownJunction 0 33.19 11.31 13.69 5.16 16.38 12.83 32.72 19.92 9.14 4.92 73.33 62.12 59.90 40.08 18.17 40.67 77.14 2.32 8.85 11.76 94.46 48.86 58.05 52 ER18a ExonRegion 0 19.88 15.70 22.50 9.27 12.75 24.70 17.20 21.04 11.87 8.09 73.11 87.42 73.25 51.76 16.12 25.10 57.38 5.00 0.89 11.69 56.61 54.77 48.95 53 E18a_E19a KnownJunction 1 29.49 25.59 35.98 7.33 17.32 23.05 33.17 27.40 13.89 15.85 92.97 84.63 85.55 85.17 31.65 11.88 78.45 6.72 0.00 23.91 62.58 65.34 66.84 54 ER19a ExonRegion 1 24.05 12.28 34.89 12.57 15.71 34.48 23.26 26.94 19.77 15.76 85.39 178.70 131.04 68.83 39.82 21.65 81.78 3.86 1.59 22.86 63.67 79.05 68.81 55 E19a_E20a KnownJunction 0 25.04 10.00 27.53 17.55 28.35 36.91 14.31 23.29 29.72 17.25 81.44 149.60 160.54 43.26 46.36 37.17 74.24 9.66 0.00 27.68 85.99 76.73 65.81 56 ER20a ExonRegion 0 28.29 12.67 36.30 13.53 15.80 34.73 22.91 22.42 17.10 16.96 82.77 127.38 123.72 69.73 47.00 42.55 89.09 7.96 1.71 20.58 66.25 89.39 60.31 57 E20a_E21a KnownJunction 0 57.71 2.43 41.75 19.31 17.23 34.75 17.80 46.62 13.14 15.82 98.66 122.74 110.71 82.76 55.63 39.39 93.78 11.36 0.00 24.67 105.15 108.02 45.50 58 ER21a ExonRegion 0 40.48 10.43 44.49 13.58 27.81 32.16 30.53 28.11 18.19 12.50 94.71 170.33 118.68 59.69 41.33 35.96 86.66 7.41 2.62 22.26 69.16 67.84 37.11 59 E21a_E22a KnownJunction 0 34.90 25.52 30.60 10.42 33.28 31.29 45.84 29.41 11.98 11.34 81.02 164.60 128.73 60.69 25.34 35.80 95.18 6.55 8.47 22.88 100.26 80.83 36.19 60 ER22a ExonRegion 0 46.31 30.94 52.69 15.70 24.25 30.98 26.61 33.29 17.53 13.93 103.28 113.20 131.26 65.89 44.09 42.03 87.32 11.30 4.39 21.67 72.93 75.65 37.58 61 E22a_E23a KnownJunction 0 54.45 40.12 80.10 22.47 85.57 51.39 39.61 39.92 24.83 20.47 82.02 153.50 166.06 51.62 38.32 49.73 73.87 20.23 3.58 25.82 34.72 105.32 19.38 62 ER23a ExonRegion 0 53.32 26.22 63.06 26.78 34.56 27.73 27.38 32.16 18.61 22.70 93.55 140.31 150.04 80.56 57.40 51.74 71.32 11.66 9.21 29.80 72.89 95.51 60.74 63 E23a_E24a KnownJunction 0 55.19 16.31 47.04 19.91 24.70 16.47 18.15 20.82 14.00 20.12 80.49 145.85 95.29 90.06 40.18 54.52 80.22 16.04 4.33 20.96 110.89 70.36 52.07 64 ER24a ExonRegion 0 87.23 45.02 53.32 20.77 39.86 31.59 41.58 26.27 14.05 20.97 78.10 116.24 105.99 57.47 39.46 32.31 66.20 7.08 5.94 25.53 101.11 69.42 39.00 65 E24a_E25a KnownJunction 0 132.10 61.44 49.58 15.58 64.60 15.90 48.67 23.78 8.65 15.28 84.07 102.78 115.41 69.16 32.76 37.77 53.95 1.70 0.00 26.40 116.70 50.95 62.66 66 E24b_E25b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 67 ER24b ExonRegion 0 0.00 0.00 0.00 0.00 1.34 0.00 5.30 0.00 1.24 0.57 0.97 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 68 I24_AR2 ActiveIntronRegion 0 12.04 8.50 14.94 9.64 4.52 8.02 7.61 3.38 4.03 4.59 4.23 10.62 19.65 3.82 10.48 5.57 3.92 1.15 0.00 7.31 2.06 3.11 7.89 69 ER25a ExonRegion 0 105.12 50.84 49.42 14.99 50.84 10.39 36.19 24.20 12.35 17.20 68.94 106.79 131.32 67.67 36.75 43.59 62.72 0.00 6.37 24.82 113.86 56.26 58.73 70 ER25b ExonRegion 0 48.47 29.96 58.30 13.33 25.93 23.35 28.24 17.80 13.33 18.85 67.99 114.68 101.88 66.15 42.84 39.00 43.01 5.08 6.27 19.23 77.74 62.08 42.04 71 E25a_E26a KnownJunction 0 26.15 12.50 36.28 5.73 55.43 34.70 49.06 14.58 13.34 15.10 52.12 77.13 88.14 47.85 49.82 25.04 32.16 3.65 9.22 17.26 14.27 41.27 41.32 72 I25_AR5 ActiveIntronRegion 0 11.07 2.88 4.85 1.94 0.87 0.24 0.32 3.75 1.42 0.00 0.00 2.13 1.25 0.22 2.97 0.92 1.93 0.00 0.00 0.34 0.00 0.97 0.95 73 ER26a ExonRegion 0 32.23 21.52 45.26 12.40 33.37 28.91 30.28 29.35 11.56 15.20 66.74 97.13 77.45 65.08 44.97 33.20 25.97 5.19 4.47 13.24 53.41 70.44 46.96 74 E26a_E27a KnownJunction 0 37.78 9.34 62.00 17.98 26.74 28.28 21.37 35.08 22.48 9.62 83.23 115.54 65.09 67.99 34.24 26.57 50.77 6.76 3.86 11.70 87.54 90.63 56.25 75 ER27a ExonRegion 0 49.03 14.17 41.87 11.90 15.64 21.49 14.60 27.26 12.22 10.98 65.28 73.69 72.45 56.62 48.23 31.55 29.30 6.76 4.74 12.63 84.36 62.64 40.81 76 E27_Da NovelBoundary 0 10.59 0.00 8.40 6.33 7.72 5.00 5.43 5.30 0.00 1.67 0.00 11.70 6.82 0.00 4.45 18.71 0.00 2.03 0.00 3.26 3.15 0.00 3.76 77 E27a_E28a KnownJunction 0 26.97 0.00 18.21 4.13 0.00 4.49 1.85 2.30 1.74 8.89 36.64 23.41 6.82 30.31 20.27 4.36 15.43 4.06 0.00 6.01 9.39 16.59 4.01 78 E27a_E29a KnownJunction 0 41.04 6.51 11.80 7.23 4.33 13.00 2.16 20.87 10.97 7.06 43.64 31.06 89.12 26.61 15.58 26.92 24.87 10.99 0.00 8.56 87.97 53.46 48.40 79 ER28a ExonRegion 0 14.77 2.89 16.19 2.11 6.67 4.92 6.76 5.71 4.39 4.06 13.99 31.98 7.89 15.01 13.22 3.77 5.04 1.51 1.14 2.73 6.84 11.66 4.88 80 ER28b ExonRegion 0 0.00 1.36 1.63 1.36 0.00 0.00 0.00 0.00 0.00 0.00 1.93 0.00 0.00 1.62 2.90 0.99 0.00 0.00 0.00 0.00 0.73 0.00 0.00 81 Ix_AR3 ActiveIntronRegion 0 0.66 5.59 8.81 6.05 5.35 0.00 6.12 15.45 2.70 2.08 1.93 0.81 8.50 2.64 0.00 5.94 0.00 2.43 0.00 2.13 2.20 0.00 2.94 82 Ix_AR4 ActiveIntronRegion 0 2.74 2.03 6.17 3.38 8.03 1.77 6.62 18.50 5.17 2.51 0.14 0.00 10.60 2.47 3.87 2.97 0.00 1.98 0.00 2.13 1.88 0.00 5.76 83 Ix_AR5 ActiveIntronRegion 0 14.91 9.43 8.74 7.19 15.69 3.42 6.62 13.98 4.38 3.44 3.87 4.33 17.91 0.81 6.46 0.00 3.75 1.85 0.00 2.13 2.20 0.00 9.61 84 ER29a ExonRegion 0 9.59 5.98 23.03 5.83 11.28 25.76 8.86 13.85 12.09 9.80 27.97 43.55 41.84 17.90 10.23 8.45 11.33 1.85 0.84 9.04 23.29 67.34 23.22 85 E29_Da KnownBoundary 0 3.26 0.00 1.83 5.19 8.32 28.68 9.85 18.28 15.89 9.13 0.00 12.15 5.84 4.71 0.00 0.00 3.55 0.00 0.00 5.50 5.44 59.46 15.19 86 ER29b ExonRegion 0 15.35 11.22 25.28 13.50 14.07 26.49 10.02 22.46 10.90 9.70 21.51 18.74 13.33 12.95 11.13 7.13 7.16 2.59 1.92 6.10 43.18 58.92 31.11