Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SRPX2 Gene 0 24.25 2.80 28.09 27.73 18.33 6.04 19.25 30.07 8.76 15.61 0.00 0.15 0.00 0.10 0.00 0.00 0.00 5.03 5.90 15.12 225.42 453.91 275.07 2 373004 Transcript 0 27.49 1.34 21.89 14.17 10.35 4.61 9.51 23.12 5.85 12.58 0.00 0.03 0.00 0.09 0.00 0.00 0.00 1.92 2.87 6.46 286.83 566.49 328.86 3 481988 Transcript 0 1.22 0.23 12.14 14.02 4.73 1.06 6.56 9.00 1.70 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.89 1.94 9.14 12.46 38.94 43.44 4 IG15 Intergenic 0 0.73 0.54 9.11 22.98 13.08 3.46 17.77 7.10 3.70 5.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.55 1.10 11.95 1.47 1.14 0.06 5 IG15_SR1 SilentIntergenicRegion 0 0.75 0.53 9.27 23.25 13.31 3.51 17.95 7.19 3.77 5.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 1.12 11.99 1.42 1.10 0.06 6 ER1a ExonRegion 0 15.87 0.00 1.23 1.02 0.00 2.75 1.99 2.59 1.24 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.88 130.22 82.23 7 ER1b ExonRegion 0 19.89 1.06 13.94 16.03 11.99 6.04 18.90 17.91 5.39 8.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.51 1.66 14.77 125.64 479.37 255.20 8 E1_Da NovelBoundary 0 0.00 0.00 6.39 23.97 29.97 0.00 18.11 2.38 4.63 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.02 18.07 17.13 0.00 3.00 0.00 9 E1a_E2a KnownJunction 0 10.30 0.00 10.70 9.56 0.00 4.37 8.17 11.17 4.63 5.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 126.71 863.88 242.00 10 E1a_E2b KnownJunction 0 0.00 0.00 5.32 0.00 0.00 0.00 0.00 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.66 32.88 15.19 11 E1a_E3a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.96 16.22 12 E2_Aa NovelBoundary 0 3.78 0.00 6.65 14.55 20.37 2.90 57.15 4.72 4.80 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.48 0.00 11.44 0.00 8.82 7.60 13 ER2a ExonRegion 0 33.65 0.00 11.11 12.05 10.13 5.53 18.64 25.97 6.40 10.59 0.00 0.63 0.00 0.00 0.00 0.00 0.00 1.93 2.50 8.95 175.40 676.70 307.33 14 E2_Ab KnownBoundary 0 38.23 0.00 5.71 13.52 19.19 19.48 14.53 24.48 5.58 7.01 0.00 6.30 0.00 0.00 0.00 0.00 0.00 1.62 0.00 21.09 231.23 576.27 293.56 15 ER2b ExonRegion 0 35.75 1.26 15.33 16.14 9.37 9.10 14.68 23.23 5.80 10.83 0.00 3.43 0.00 0.00 0.00 0.00 0.00 1.51 1.98 12.35 274.58 646.22 320.77 16 E2a_E3a KnownJunction 0 35.71 0.00 21.08 5.73 0.00 2.38 0.00 16.96 3.44 6.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 253.23 451.47 314.82 17 I2_SR3 SilentIntronRegion 0 0.75 0.40 13.14 18.38 7.12 0.90 12.32 8.94 4.05 6.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.24 2.44 14.17 4.54 3.34 6.92 18 E3_Aa NovelBoundary 0 0.00 0.00 23.65 26.64 15.62 0.00 30.87 16.59 3.04 9.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.61 0.00 17.13 5.07 4.78 0.00 19 ER3a ExonRegion 0 22.81 2.56 26.50 22.21 11.99 10.28 22.10 33.93 6.39 12.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 1.02 10.93 300.90 520.70 331.59 20 E3_Da KnownBoundary 0 3.04 0.00 32.11 38.79 8.66 16.41 23.80 26.00 4.17 7.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.18 4.80 9.46 32.00 66.68 103.20 21 E3a_E4a KnownJunction 0 11.48 0.00 4.23 0.00 0.00 5.22 0.00 9.12 1.42 10.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 215.05 403.71 188.57 22 ER3b ExonRegion 0 2.44 0.45 18.96 28.04 9.46 2.11 13.12 16.31 3.40 11.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.78 3.88 18.29 22.26 45.00 71.68 23 E3_Db NovelBoundary 0 2.96 0.00 5.97 41.72 0.00 8.35 35.55 4.85 9.32 8.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24.29 8.59 53.89 80.07 24 I3 Intron 0 7.44 3.33 21.38 39.17 25.94 3.04 25.97 20.18 6.66 11.64 0.00 0.06 0.00 0.00 0.00 0.10 0.00 4.12 4.95 15.14 22.64 65.51 75.54 25 I3_SR1 SilentIntronRegion 0 5.90 1.41 14.25 24.32 14.37 2.43 19.51 16.13 5.43 9.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.80 3.56 14.31 25.38 62.63 83.72 26 I3_AR1 ActiveIntronRegion 0 1.10 2.74 16.07 29.47 23.70 2.92 25.79 18.14 5.16 7.91 0.00 0.55 0.00 0.00 0.00 0.00 0.00 1.70 2.96 11.10 21.97 60.66 67.29 27 I3_SR2 SilentIntronRegion 0 12.38 6.84 35.74 68.46 46.83 4.18 37.64 28.27 9.44 16.81 0.00 0.00 0.00 0.00 0.00 0.31 0.00 5.62 8.08 18.40 19.05 74.11 67.21 28 E4_Aa NovelBoundary 0 14.08 2.96 67.15 68.72 85.99 2.84 47.43 51.06 16.44 20.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.12 33.75 35.03 130.49 88.35 29 ER4a ExonRegion 0 34.43 5.93 48.11 59.86 54.60 9.60 33.40 57.81 13.82 23.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.62 7.65 13.56 318.81 619.77 338.69 30 E4_Da NovelBoundary 0 23.34 0.00 54.34 83.11 65.87 2.61 27.78 36.47 14.84 21.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.79 4.80 34.45 8.53 0.00 0.00 31 E4a_E5a KnownJunction 0 14.45 0.00 14.93 3.76 7.30 4.60 1.99 31.42 0.00 12.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 378.82 938.22 466.42 32 I4 Intron 0 5.35 7.05 44.16 59.13 32.88 3.39 27.22 25.31 10.44 15.35 0.00 0.23 0.00 0.00 0.00 0.19 0.00 7.69 8.16 21.94 3.50 2.09 3.71 33 I4_SR1 SilentIntronRegion 0 5.36 7.06 44.22 59.20 32.92 3.39 27.25 25.34 10.46 15.37 0.00 0.23 0.00 0.00 0.00 0.19 0.00 7.70 8.17 21.96 3.50 2.10 3.72 34 E5_Aa NovelBoundary 0 0.00 11.31 31.67 27.37 29.46 2.33 21.37 12.73 4.28 13.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.58 28.38 2.90 2.69 3.41 35 ER5a ExonRegion 0 15.82 5.87 21.38 19.37 21.95 5.37 12.85 29.74 4.81 14.37 0.00 0.00 0.00 0.47 0.00 0.00 0.00 3.99 5.51 13.51 326.40 567.05 274.63 36 E5_Da NovelBoundary 0 5.85 3.35 29.24 44.02 23.01 2.44 18.02 17.91 5.18 13.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.77 11.77 33.30 13.90 3.00 3.67 37 E5a_E6a KnownJunction 0 19.78 0.00 17.24 1.50 7.64 2.38 0.00 24.44 1.62 11.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 358.19 1164.78 531.30 38 I5 Intron 0 1.85 1.07 13.40 33.34 16.36 3.84 20.81 17.54 4.82 5.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.74 6.68 23.41 4.62 2.55 4.10 39 I5_SR1 SilentIntronRegion 0 1.86 1.07 13.48 33.57 16.46 3.87 20.96 17.67 4.86 6.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.78 6.72 23.57 4.65 2.56 4.13 40 E6_Aa NovelBoundary 0 3.63 0.00 37.79 43.22 20.37 2.73 39.83 11.83 6.31 13.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.02 0.00 26.08 0.00 6.18 8.54 41 ER6a ExonRegion 0 32.00 2.45 22.57 18.15 15.63 2.40 17.06 29.00 4.99 10.54 0.00 0.00 0.00 1.19 0.00 0.00 0.00 4.42 3.84 16.30 365.30 508.33 374.39 42 E6_Da NovelBoundary 0 0.00 3.29 19.46 34.53 34.55 0.00 27.25 38.57 9.29 9.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.52 9.60 14.76 0.00 0.00 3.59 43 E6a_E7a KnownJunction 0 41.71 0.00 12.30 3.36 0.00 0.00 0.00 15.65 1.45 10.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 443.81 327.11 217.16 44 I6 Intron 0 0.65 1.87 6.73 9.36 13.98 3.38 19.52 6.33 5.65 2.63 0.00 0.00 0.00 0.41 0.00 0.00 0.00 8.18 6.85 15.69 4.05 0.64 3.61 45 I6_AR1 ActiveIntronRegion 0 0.14 2.64 7.69 11.02 17.17 3.53 22.00 7.46 6.17 2.32 0.00 0.00 0.00 0.58 0.00 0.00 0.00 9.90 8.96 17.71 4.86 0.90 5.08 46 E7_Aa NovelBoundary 0 0.00 2.50 12.42 29.03 7.89 0.00 20.01 27.60 13.86 11.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.48 4.80 15.15 2.72 0.00 7.26 47 ER7a ExonRegion 0 25.21 0.00 22.06 10.80 5.26 3.40 13.55 20.20 8.94 17.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 2.66 11.37 330.10 451.90 306.11 48 E7_Da NovelBoundary 0 0.00 2.89 20.93 29.53 29.20 0.00 14.18 15.81 16.44 11.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.10 13.55 36.88 5.81 5.14 3.67 49 E7a_E8a KnownJunction 0 45.34 0.00 25.10 13.38 3.90 2.90 2.25 14.42 1.74 6.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 406.37 692.18 536.59 50 I7 Intron 0 0.98 1.42 6.79 16.68 16.18 3.84 20.63 11.98 4.71 5.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.78 4.20 15.50 2.22 2.42 6.15 51 I7_AR1 ActiveIntronRegion 0 1.21 1.75 7.85 15.13 16.48 3.94 23.71 12.91 3.96 5.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.58 4.56 12.19 3.16 1.19 5.47 52 I7_SR1 SilentIntronRegion 0 0.72 1.04 5.59 18.64 15.92 3.74 17.10 10.94 5.63 6.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.03 3.79 19.53 1.12 3.90 6.99 53 E8_Aa NovelBoundary 0 0.00 0.00 5.06 12.59 17.49 0.00 17.00 6.70 7.23 4.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.42 0.00 16.49 0.00 0.00 7.17 54 ER8a ExonRegion 0 23.02 2.30 18.36 13.17 10.08 2.37 10.89 16.49 5.39 13.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.32 7.22 10.90 253.03 399.16 267.23 55 E8_Da NovelBoundary 0 0.00 0.00 7.84 16.78 7.22 5.45 0.00 20.66 2.66 2.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.75 3.67 24.29 8.90 6.18 11.52 56 E8a_E9a KnownJunction 0 48.45 0.00 23.95 5.56 0.00 0.00 2.25 25.79 5.87 9.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 275.71 478.29 343.50 57 I8 Intron 0 1.27 2.44 9.04 27.73 6.82 3.58 18.67 17.39 7.45 5.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.65 3.34 20.43 2.64 2.81 4.85 58 I8_SR1 SilentIntronRegion 0 1.28 2.45 9.09 27.89 6.86 3.60 18.78 17.49 7.50 5.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.69 3.36 20.55 2.66 2.83 4.87 59 E9_Aa NovelBoundary 0 0.00 3.09 3.43 32.03 17.91 11.02 39.00 17.50 11.75 3.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.70 0.00 23.39 3.09 0.00 7.34 60 ER9a ExonRegion 0 36.41 3.10 26.00 18.59 13.08 13.15 18.57 26.86 8.19 19.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.90 9.72 13.75 298.01 492.21 368.48 61 E9_Da NovelBoundary 0 0.00 0.00 6.92 19.98 8.23 2.78 32.42 30.76 11.75 6.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.54 0.00 20.71 2.47 2.27 8.62 62 E9a_E10a KnownJunction 0 40.75 0.00 19.66 9.22 12.56 7.78 5.39 19.22 5.64 16.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 292.15 681.71 419.30 63 I9 Intron 0 1.45 3.55 14.38 30.38 17.58 2.89 23.75 25.92 8.82 8.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.44 8.29 24.03 3.09 1.21 2.91 64 I9_SR1 SilentIntronRegion 0 1.72 3.18 8.92 24.43 18.25 1.08 24.20 19.22 5.89 7.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.09 7.13 21.94 2.10 1.54 4.18 65 I9_AR1 ActiveIntronRegion 0 1.61 3.30 16.54 34.25 20.34 4.96 26.25 26.15 10.42 10.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.54 7.43 20.66 5.28 0.68 1.83 66 I9_SR2 SilentIntronRegion 0 0.66 4.71 22.90 37.60 12.34 3.75 19.35 39.87 12.78 9.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.14 11.99 33.39 2.05 1.30 1.83 67 E10_Aa NovelBoundary 0 13.63 9.80 22.21 19.74 8.23 0.00 25.17 36.56 10.39 8.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.72 0.00 31.70 3.03 2.82 0.00 68 ER10a ExonRegion 0 19.22 0.85 37.92 17.07 7.98 2.65 5.49 21.22 12.44 11.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.54 3.97 13.46 283.29 489.10 332.51 69 E10_Da NovelBoundary 0 3.63 0.00 5.12 7.72 12.22 5.79 20.98 6.08 3.18 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 9.04 17.13 2.35 0.00 0.00 70 E10a_E11a KnownJunction 0 26.23 0.00 31.96 3.53 0.00 5.56 0.00 12.61 6.92 11.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 392.41 466.35 388.57 71 I10 Intron 0 2.57 4.18 24.37 33.31 17.93 2.71 20.67 21.88 8.06 6.67 0.00 0.38 0.00 0.00 0.00 0.00 0.00 6.50 6.89 22.55 2.09 2.09 6.66 72 I10_SR1 SilentIntronRegion 0 2.58 4.20 24.44 33.41 17.98 2.72 20.73 21.94 8.08 6.69 0.00 0.38 0.00 0.00 0.00 0.00 0.00 6.52 6.91 22.62 2.10 2.09 6.68 73 E11_Aa NovelBoundary 0 0.00 5.92 27.02 33.86 24.36 2.78 17.80 26.57 13.89 10.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.08 0.00 33.68 2.53 0.00 0.00 74 ER11a ExonRegion 0 28.16 5.05 47.06 49.33 26.58 7.53 28.30 45.59 15.69 23.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.64 11.53 20.88 195.32 412.54 263.33 75 IG16 Intergenic 0 12.15 3.02 14.90 24.95 17.80 6.47 23.52 19.76 6.26 10.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.39 6.43 19.40 68.49 226.74 172.24 76 IG16_AR1 ActiveIntergenicRegion 0 4.71 4.38 18.30 27.09 18.33 4.50 16.54 15.79 6.14 8.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.93 6.26 20.55 88.91 172.06 177.31 77 IG16_AR2 ActiveIntergenicRegion 0 0.84 3.75 3.48 8.75 8.24 4.54 6.83 4.41 1.30 4.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.19 5.36 2.63 47.73 52.03 71.95 78 IG16_SR1 SilentIntergenicRegion 0 0.00 0.89 7.63 16.68 27.96 1.08 20.23 7.52 2.91 11.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 19.93 49.07 178.18 116.89 79 IG16_AR3 ActiveIntergenicRegion 0 15.24 3.99 12.75 31.24 21.74 8.23 31.23 32.95 7.58 13.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.77 9.77 19.83 72.68 248.83 189.06 80 IG16_SR2 SilentIntergenicRegion 0 13.26 3.69 16.24 25.17 15.47 1.41 24.27 28.17 7.37 8.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.90 11.15 19.18 89.14 367.22 212.96 81 IG16_AR4 ActiveIntergenicRegion 0 12.89 1.71 6.70 11.65 13.49 7.78 21.73 17.96 4.82 7.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.59 2.91 16.18 57.69 248.54 161.63 82 IG16_AR5 ActiveIntergenicRegion 0 21.27 1.14 19.20 26.27 15.44 8.02 28.22 14.87 6.68 12.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.99 5.93 20.59 44.29 271.28 165.08