Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PIN4 Gene 0 48.64 58.07 96.49 69.32 101.71 54.43 57.04 72.59 42.16 44.26 43.83 15.53 12.70 22.97 35.25 48.01 43.47 46.98 95.68 57.03 31.76 37.83 49.07 2 373662 Transcript 0 6.36 8.28 2.41 3.05 7.83 2.15 10.24 1.68 1.13 8.80 1.08 0.31 0.95 4.73 2.88 1.27 0.84 1.90 3.02 7.68 0.92 1.14 2.58 3 218432 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 373669 Transcript 0 3.02 0.29 0.88 1.56 3.06 0.00 1.51 0.49 1.06 1.47 0.00 0.00 0.00 1.39 0.00 1.70 0.00 0.00 0.00 0.61 0.00 0.60 0.84 5 423432 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 475071 Transcript 0 35.38 39.95 58.21 40.59 67.28 23.84 31.59 33.09 17.20 24.17 19.47 17.94 5.36 18.21 20.93 25.48 13.91 29.96 32.99 51.67 11.65 25.75 20.98 7 446576 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 439980 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 496835 Transcript 0 13.20 4.26 12.49 30.59 48.05 2.47 3.63 27.08 20.76 4.41 0.00 2.87 4.70 0.41 2.36 0.00 0.51 6.08 9.64 9.98 4.77 7.75 7.44 10 ER1a ExonRegion 0 0.76 0.00 0.00 0.00 0.14 0.17 0.39 0.00 0.29 0.00 1.18 0.00 0.00 0.33 0.04 0.17 0.38 0.87 0.00 0.00 0.18 0.49 0.00 11 E1_Ab KnownBoundary 0 13.34 0.00 0.00 0.00 3.57 5.11 11.08 0.00 0.00 0.00 4.74 0.00 0.00 2.47 0.00 6.75 3.74 0.00 0.00 0.00 5.37 3.00 0.00 12 ER1b ExonRegion 0 15.73 1.79 0.41 0.00 10.23 3.13 15.71 0.00 0.00 2.23 7.54 0.00 0.00 6.50 15.02 13.52 21.04 0.36 5.37 0.00 5.62 3.19 0.00 13 E1_Ac KnownBoundary 1 18.08 9.54 1.36 0.00 42.19 2.50 19.08 0.00 1.36 5.29 8.90 0.00 0.00 6.95 40.18 3.67 9.26 2.28 8.47 0.00 0.00 0.00 0.00 14 ER1c ExonRegion 1 225.05 218.26 121.59 59.68 255.07 175.47 204.86 81.50 42.10 55.31 131.49 3.75 3.50 92.02 119.43 262.35 162.83 115.97 169.87 102.79 84.37 49.48 138.42 15 E1_Ad KnownBoundary 1 209.07 0.00 0.00 0.00 6.03 0.00 5.17 2.55 0.00 17.68 3.74 0.00 0.00 2.12 44.13 422.11 155.96 0.00 0.00 2.30 2.22 0.00 0.00 16 E1_Ae KnownBoundary 0 180.40 296.92 438.19 237.60 166.38 123.34 173.03 339.97 166.90 124.83 75.02 7.35 12.99 26.84 37.21 178.93 81.16 370.34 303.26 123.81 96.19 143.35 212.21 17 ER1d ExonRegion 1 638.13 829.70 519.56 300.52 960.59 677.59 777.17 378.53 197.00 174.90 431.04 19.48 18.76 305.33 410.53 713.31 391.16 487.81 1110.10 438.30 350.39 241.69 697.45 18 ER1e ExonRegion 1 707.84 988.70 739.78 444.17 1254.59 792.83 874.52 544.73 282.03 244.00 534.02 43.84 27.55 261.99 395.93 713.31 419.01 643.94 1835.96 585.97 448.11 447.50 903.29 19 E1_Da KnownBoundary 0 34.82 42.82 20.46 11.02 120.20 24.36 35.60 13.31 10.50 6.61 0.00 0.00 0.00 6.89 8.90 4.36 7.85 14.18 23.72 40.27 0.00 0.00 8.71 20 E1a_E2a KnownJunction 0 7.33 6.31 0.00 0.00 8.40 0.00 12.85 0.00 0.00 7.79 0.00 0.00 0.00 4.71 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 21 E1a_E2b KnownJunction 1 731.98 957.72 1084.08 673.07 1394.31 718.11 760.22 816.02 419.30 334.03 512.29 56.42 39.12 164.34 304.10 660.17 364.09 792.96 2380.02 604.72 412.12 543.26 976.64 22 E1a_E3a NovelJunction 0 3.04 33.94 5.50 1.90 122.75 0.00 95.79 2.55 1.79 43.62 2.68 0.00 0.00 14.54 26.21 0.00 0.00 2.11 4.24 69.67 0.00 2.69 0.00 23 ER1f ExonRegion 0 4.23 6.46 4.19 7.62 16.03 8.64 4.14 4.74 5.07 3.22 0.64 0.04 0.48 1.76 2.45 5.39 1.53 2.84 6.44 6.40 1.29 0.11 1.48 24 E1b_E2b KnownJunction 0 0.00 0.00 1.71 10.06 4.33 2.78 0.00 0.00 4.98 1.67 2.68 0.00 6.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 I1 Intron 0 10.70 13.25 7.35 10.02 16.74 2.06 19.86 4.69 2.07 7.05 0.70 2.53 1.40 4.67 5.77 2.57 1.74 4.25 3.51 22.43 1.16 0.40 1.27 26 I1_SR1 SilentIntronRegion 0 3.32 4.22 3.78 3.59 19.73 4.14 19.83 2.55 1.03 5.17 0.27 1.43 0.93 3.86 2.01 2.76 1.32 4.26 3.01 14.77 0.31 0.22 1.65 27 I1_AR1 ActiveIntronRegion 0 13.48 14.96 9.52 12.87 17.42 2.06 22.36 4.94 2.57 8.32 0.99 3.43 1.67 5.20 7.15 2.80 1.74 4.63 4.47 27.45 1.63 0.13 1.21 28 I1_SR2 SilentIntronRegion 0 10.63 15.34 6.24 9.38 14.47 1.10 16.66 5.39 1.93 6.30 0.51 1.89 1.28 4.37 5.78 2.17 1.94 3.75 2.52 19.59 0.96 0.83 1.17 29 E2_Aa NovelBoundary 0 61.12 42.43 3.67 15.45 55.26 2.16 35.90 3.74 0.00 12.22 0.00 0.00 0.00 4.65 4.45 0.00 3.83 0.00 0.00 33.24 2.59 0.00 0.00 30 ER2a ExonRegion 0 10.98 18.53 7.24 9.16 14.94 6.28 17.48 5.04 3.10 18.62 2.06 0.93 2.84 9.15 8.60 3.62 2.16 4.84 9.07 20.09 2.58 2.92 7.73 31 E2_Ab KnownBoundary 0 9.48 27.63 3.10 18.35 16.30 0.00 16.03 1.93 2.86 30.03 0.00 0.00 0.00 10.36 0.00 3.50 0.00 0.00 0.00 23.27 2.90 0.00 0.00 32 ER2b ExonRegion 0 118.15 174.89 666.55 398.95 306.68 210.06 180.77 437.63 233.13 209.16 259.91 47.51 46.13 63.94 114.34 193.68 223.78 354.69 570.22 200.55 179.77 161.20 278.34 33 E2a_E3a KnownJunction 1 31.04 44.60 455.60 242.29 119.52 51.05 109.97 253.26 136.08 194.96 292.65 85.38 77.92 39.61 113.23 60.24 362.69 107.24 54.31 163.76 220.98 61.85 22.02 34 I2_AR1 ActiveIntronRegion 0 15.74 13.61 6.61 10.28 8.81 1.95 7.93 6.97 3.04 5.04 1.37 0.84 0.91 3.41 4.40 3.16 2.73 9.28 3.76 9.03 3.12 0.47 2.75 35 ER3a ExonRegion 1 21.64 33.31 837.81 493.83 131.75 31.64 40.22 563.79 295.51 307.24 522.59 65.67 37.12 159.53 263.52 375.45 506.52 372.57 847.22 362.90 403.90 276.90 314.06 36 E3_Ab KnownBoundary 1 43.12 78.80 1206.29 800.53 217.66 57.24 72.69 826.29 441.63 393.15 420.16 49.37 75.16 411.03 759.26 996.49 451.89 787.08 2598.10 576.09 327.30 719.55 1140.45 37 ER3b ExonRegion 1 36.46 67.15 786.79 522.37 660.53 152.47 95.65 504.18 288.24 267.84 232.11 82.44 64.61 271.76 420.92 673.34 240.29 588.53 1295.99 431.22 172.92 463.22 782.65 38 E3_Da KnownBoundary 0 14.22 29.07 17.65 16.68 56.79 2.56 24.07 14.58 3.41 4.62 2.68 0.00 8.28 7.00 4.45 0.00 3.65 12.64 9.04 26.59 0.00 0.00 11.44 39 E3a_E3c KnownJunction 0 10.67 78.93 421.30 307.52 606.62 236.85 161.02 226.77 124.04 163.75 136.77 36.16 65.74 166.05 211.01 135.01 134.83 192.63 184.10 217.51 66.90 302.43 117.12 40 E3a_E4a KnownJunction 0 14.82 0.00 3.67 23.07 76.91 14.25 4.50 28.26 26.48 1.50 2.47 0.00 19.80 0.00 0.00 0.00 0.00 20.64 12.05 3.20 0.00 3.00 11.61 41 E3_Db KnownBoundary 0 24.97 6.45 10.17 23.17 87.35 39.41 24.16 2.46 3.82 7.95 2.16 0.00 12.66 0.00 8.90 0.00 3.83 4.27 4.80 23.52 0.00 3.12 0.00 42 ER3c ExonRegion 0 19.05 21.61 19.10 27.14 68.90 27.35 25.10 12.75 5.30 9.89 2.98 1.08 15.05 5.96 7.25 1.61 3.30 13.55 12.08 27.48 0.18 2.60 9.42 43 ER3d ExonRegion 0 45.49 38.83 18.66 23.54 51.57 16.77 33.72 14.60 6.71 13.96 4.42 10.64 12.66 6.35 3.59 7.01 9.58 7.89 4.07 28.52 2.62 5.00 3.00 44 E3_Dc KnownBoundary 0 45.27 50.78 22.23 21.84 26.40 11.07 19.21 19.22 7.44 20.66 12.32 13.35 34.58 7.06 4.45 0.00 7.29 2.57 4.80 21.60 0.00 6.00 0.00 45 ER3e ExonRegion 0 20.40 20.45 24.18 26.61 37.59 9.57 21.28 21.66 5.98 14.28 7.25 12.83 12.14 7.00 10.76 10.96 12.34 10.57 9.24 37.55 4.29 2.78 3.74 46 E3_Dd KnownBoundary 0 24.97 24.60 10.53 6.06 34.80 2.61 23.54 2.09 6.51 8.76 4.11 13.95 6.01 4.94 4.82 7.95 4.68 3.77 4.80 29.02 3.15 0.00 0.00 47 E3_Ac KnownBoundary 0 36.08 37.69 25.58 19.31 10.78 7.95 14.79 14.95 2.55 6.23 8.00 0.00 0.00 4.71 0.00 4.10 0.00 6.01 9.41 27.48 5.87 8.88 4.35 48 ER3f ExonRegion 0 35.38 39.95 58.21 40.59 67.28 23.84 31.59 33.09 17.20 24.17 19.47 17.94 5.36 18.21 20.93 25.48 13.91 29.96 32.99 51.67 11.65 25.75 20.98 49 ER3g ExonRegion 0 85.19 108.78 97.09 77.12 146.64 108.93 105.51 84.71 52.89 65.73 35.62 27.83 20.25 20.48 32.29 18.55 37.46 19.21 30.93 61.99 19.82 39.72 16.33 50 E3_De KnownBoundary 0 21.71 17.17 38.59 42.95 54.24 10.22 11.17 33.97 29.08 18.21 4.79 6.30 13.64 6.83 0.00 3.33 7.76 1.87 3.58 30.49 2.78 18.49 0.00 51 ER3h ExonRegion 0 14.69 8.05 31.53 26.20 27.29 5.93 15.61 19.03 19.13 16.86 4.47 15.08 11.86 1.20 2.80 5.97 4.30 1.76 5.56 20.68 1.20 5.49 3.47 52 E3_Dg NovelBoundary 1 14.37 3.29 2.37 4.03 16.13 0.00 2.25 10.97 5.96 0.00 0.00 18.91 13.15 2.59 0.00 4.02 0.00 0.00 0.00 30.68 0.00 0.00 0.00 53 ER3i ExonRegion 0 3.02 0.29 0.88 1.56 3.06 0.00 1.51 0.49 1.06 1.47 0.00 0.00 0.00 1.39 0.00 1.70 0.00 0.00 0.00 0.61 0.00 0.60 0.84 54 Ix_AR1 ActiveIntronRegion 0 0.00 0.00 0.00 17.72 0.00 0.00 3.97 0.00 0.00 4.59 0.00 8.66 9.38 0.00 0.00 14.86 0.00 0.00 0.00 6.38 0.00 0.00 0.00 55 Ix_SR1 SilentIntronRegion 0 10.24 9.16 5.99 11.97 15.07 4.50 10.83 7.61 6.98 5.04 2.75 4.28 7.93 2.08 2.70 4.82 3.50 11.12 10.24 19.25 2.70 2.55 5.35 56 I3_AR1 ActiveIntronRegion 0 6.40 0.90 8.50 6.33 10.47 1.63 0.71 16.22 5.94 2.25 0.00 0.95 0.74 0.12 1.50 1.06 0.00 5.95 6.07 5.29 4.56 2.18 2.09 57 ER4a ExonRegion 0 10.77 3.95 18.30 28.32 143.48 32.32 7.83 24.10 23.82 2.87 0.75 2.45 5.47 0.65 1.10 1.68 0.00 10.24 22.26 9.67 9.75 4.54 6.69 58 E4_Da KnownBoundary 1 3.70 3.35 24.36 30.73 27.16 20.33 1.85 28.30 33.22 3.01 0.00 13.95 6.82 0.00 0.00 0.00 0.00 3.81 15.91 9.27 11.24 9.06 4.35 59 ER4b ExonRegion 0 13.20 4.26 12.49 30.59 48.05 2.47 3.63 27.08 20.76 4.41 0.00 2.87 4.70 0.41 2.36 0.00 0.51 6.08 9.64 9.98 4.77 7.75 7.44