Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 APEX2 Gene 0 60.31 23.14 68.13 25.18 30.03 14.78 19.39 27.45 21.46 39.00 145.42 51.06 42.02 137.62 131.43 134.16 110.50 47.80 41.90 26.82 53.40 44.67 38.03 2 374987 Transcript 0 38.47 18.09 59.66 26.20 24.92 19.18 17.22 27.22 24.34 44.74 163.93 45.09 46.30 137.94 115.17 142.18 113.01 46.60 46.58 25.37 52.74 59.18 41.93 3 471758 Transcript 0 0.00 0.00 0.00 0.00 3.48 0.00 0.00 2.05 2.69 2.69 24.11 0.00 6.82 2.47 19.16 4.02 14.03 1.58 4.33 0.00 0.00 10.72 0.00 4 ER1a ExonRegion 1 19.39 15.50 4.47 3.35 9.33 3.62 7.12 2.24 3.30 1.67 23.93 0.94 0.00 60.75 51.67 75.19 17.93 2.80 14.03 10.93 18.88 30.46 19.60 5 E1_Ab KnownBoundary 1 76.31 36.18 17.89 14.75 33.87 24.08 31.58 8.46 7.38 21.25 79.23 5.70 5.84 141.80 120.03 184.82 42.92 44.44 47.44 26.91 71.60 63.13 64.28 6 ER1b ExonRegion 1 53.70 15.38 29.24 16.77 17.49 8.24 11.40 20.61 10.63 22.74 130.89 17.04 10.19 108.23 79.46 107.36 92.73 26.37 34.75 20.65 43.30 35.85 28.21 7 E1_Da NovelBoundary 0 3.63 0.00 4.55 4.13 3.82 0.00 0.00 3.90 6.92 1.21 11.00 19.66 0.00 24.07 14.96 53.15 16.36 15.34 14.12 7.73 5.31 8.94 4.35 8 E1a_E2a KnownJunction 1 36.38 0.00 53.22 40.32 7.56 7.67 4.33 21.77 19.42 44.05 186.21 5.40 40.74 276.36 173.93 237.20 102.76 52.60 43.58 36.05 82.29 91.67 86.99 9 I1 Intron 0 5.87 3.58 4.77 1.95 5.28 2.45 4.24 7.56 3.14 4.01 9.80 13.87 15.25 18.33 5.53 15.07 11.97 5.58 4.08 4.99 3.41 5.67 2.98 10 I1_SR1 SilentIntronRegion 0 4.61 4.05 7.33 2.51 9.66 4.07 6.34 7.51 4.04 3.51 11.68 20.09 12.29 18.32 8.14 18.87 10.44 4.17 3.53 4.54 2.79 8.56 3.26 11 I1_AR1 ActiveIntronRegion 0 12.72 3.06 6.95 4.43 3.13 0.56 3.54 9.28 6.63 9.01 8.81 25.43 14.96 22.89 4.31 24.81 15.36 13.13 1.71 10.73 3.80 8.05 4.33 12 I1_SR2 SilentIntronRegion 0 5.27 3.54 3.78 1.45 4.41 2.28 3.78 7.35 2.42 3.46 9.45 10.59 16.14 17.74 5.00 12.70 11.95 4.92 4.57 4.32 3.53 4.56 2.72 13 ER2a ExonRegion 0 19.35 11.57 61.63 29.92 14.11 16.22 13.05 28.42 19.25 43.80 129.85 43.76 55.11 178.90 144.30 192.37 118.44 44.83 44.56 28.90 53.47 71.43 41.22 14 E2a_E3a KnownJunction 0 3.19 3.16 84.15 35.33 22.67 32.08 6.05 29.12 25.40 45.69 71.44 18.16 13.31 66.75 53.40 71.35 55.73 21.43 14.40 22.50 23.17 30.19 18.61 15 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 3.48 0.00 0.00 2.05 2.69 2.69 24.11 0.00 6.82 2.47 19.16 4.02 14.03 1.58 4.33 0.00 0.00 10.72 0.00 16 E3_Aa NovelBoundary 1 2.89 3.35 6.77 11.12 7.64 0.00 2.25 4.27 6.57 13.24 7.11 40.96 11.85 21.37 10.01 21.19 9.44 10.40 0.00 2.75 2.35 5.20 0.00 17 ER3a ExonRegion 0 21.98 24.34 66.61 32.14 35.79 32.78 29.86 34.69 34.42 61.92 262.88 77.88 65.06 193.09 148.49 185.90 197.29 71.00 61.65 32.53 82.67 75.86 57.69 18 E3a_E4a KnownJunction 0 86.98 24.73 73.83 35.99 26.83 15.16 25.84 44.98 39.61 80.88 348.51 86.13 119.47 262.35 202.61 271.98 208.23 96.46 107.67 36.56 96.50 123.88 81.18 19 E4_Aa NovelBoundary 0 11.26 9.74 4.58 2.06 4.33 0.00 6.27 0.00 10.65 10.26 9.74 6.30 19.15 23.78 0.00 45.20 28.14 8.58 9.51 3.13 8.28 14.14 3.41 20 ER4a ExonRegion 0 69.11 29.05 64.87 29.58 28.80 17.10 27.82 38.23 36.36 67.19 340.61 103.82 67.10 268.94 175.12 234.60 239.57 88.79 78.31 37.14 100.86 79.00 55.96 21 E4a_E5a KnownJunction 0 186.70 60.84 87.34 35.29 73.60 29.24 42.66 52.70 46.93 80.34 408.68 164.75 92.53 306.91 182.21 479.79 324.73 136.67 160.10 52.48 146.84 137.04 134.62 22 E5_Aa NovelBoundary 0 31.34 3.29 10.41 3.50 15.37 2.67 8.52 4.39 7.18 9.08 19.37 13.95 6.49 17.84 4.45 24.18 32.16 6.05 13.46 11.76 2.90 9.12 3.41 23 ER5a ExonRegion 0 97.24 28.67 68.27 30.12 38.34 27.56 36.13 43.33 35.84 63.69 287.64 141.88 134.60 297.03 215.40 330.33 224.13 73.99 87.78 38.75 97.72 99.92 79.37 24 E5a_E6a KnownJunction 0 89.57 21.25 72.35 30.23 52.97 35.55 65.58 28.42 35.21 68.07 240.69 94.23 102.27 327.51 195.93 251.73 145.68 68.48 66.07 38.61 78.21 60.44 44.99 25 I5 Intron 0 15.12 5.63 14.65 3.50 13.21 2.65 7.65 6.30 4.80 8.44 18.07 14.60 11.88 21.94 11.10 19.56 19.60 5.49 8.18 5.46 4.07 7.61 6.72 26 I5_AR1 ActiveIntronRegion 0 12.78 5.61 12.82 3.47 17.04 1.81 7.30 6.26 6.28 9.99 20.43 17.60 14.88 23.11 11.10 21.66 21.02 5.67 10.66 5.16 4.19 8.62 6.17 27 I5_SR2 SilentIntronRegion 0 12.17 4.25 11.53 1.67 1.70 1.96 2.14 5.03 0.98 7.14 12.96 7.08 7.04 18.38 5.41 12.90 17.70 6.30 0.00 2.76 3.21 8.76 5.34 28 I5_AR2 ActiveIntronRegion 0 27.18 7.28 25.15 3.87 11.05 5.91 10.87 9.71 3.28 7.33 20.31 15.14 10.67 25.33 13.97 20.71 18.60 5.76 6.99 8.22 4.37 7.53 10.14 29 E6_Aa NovelBoundary 0 42.23 8.68 35.60 7.06 16.30 12.83 19.83 15.40 4.31 14.83 12.16 6.30 12.66 28.25 31.15 44.52 21.32 14.88 12.99 0.00 5.68 5.39 11.61 30 ER6a ExonRegion 0 93.96 32.35 102.91 33.75 42.60 26.76 32.35 42.17 34.39 66.47 243.10 92.18 88.90 284.76 227.85 251.28 194.01 84.32 65.14 42.78 107.04 71.54 61.67 31 E6_Da KnownBoundary 0 153.88 59.73 200.85 63.63 65.11 34.18 49.29 41.03 47.25 93.51 277.54 88.98 112.01 324.92 312.88 370.42 223.00 127.43 110.12 79.32 129.36 85.18 112.51 32 ER6b ExonRegion 0 60.82 22.71 69.23 24.17 30.01 12.24 17.25 25.09 18.95 33.52 112.88 42.34 33.67 106.77 119.69 106.47 85.89 41.31 35.13 24.36 42.48 35.50 32.59