Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ITGB1BP2 Gene 0 11.94 18.81 25.80 11.67 13.05 5.94 11.24 12.69 7.08 16.17 12.02 3.97 2.89 13.22 15.78 11.83 10.96 20.63 6.80 29.72 2.50 3.19 4.10 2 373829 Transcript 0 10.53 14.58 11.59 6.31 9.62 6.67 7.54 7.97 5.64 10.79 11.37 3.71 1.25 12.13 9.84 7.63 8.57 15.32 4.63 19.02 1.57 4.71 3.04 3 483897 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 465388 Transcript 0 6.71 9.00 11.46 5.17 6.27 0.82 6.59 5.62 3.09 6.93 3.49 1.13 0.81 2.90 6.49 4.37 7.07 11.07 4.72 12.01 0.12 0.12 2.31 5 475413 Transcript 0 12.74 10.87 9.84 7.20 15.05 4.33 14.39 6.76 2.96 4.26 4.86 0.00 3.98 8.30 17.55 11.44 6.17 9.24 3.28 15.37 1.14 1.07 1.72 6 IG36 Intergenic 0 6.88 17.95 22.04 9.25 9.45 7.15 12.30 10.77 5.47 13.34 8.08 3.08 5.10 8.86 9.48 8.55 9.19 22.44 8.58 24.90 1.84 0.39 3.00 7 IG36_SR2 SilentIntergenicRegion 0 6.99 18.49 22.71 9.56 9.74 7.40 12.61 11.07 5.66 13.76 8.24 3.07 5.27 9.11 9.80 8.84 9.50 23.20 8.78 25.68 1.90 0.40 3.10 8 ER1a ExonRegion 0 0.38 6.83 1.97 0.00 1.43 11.59 5.63 0.68 1.72 2.66 7.25 0.31 2.35 12.41 6.84 7.22 2.24 7.59 6.14 10.41 0.31 4.24 1.15 9 ER1b ExonRegion 0 5.40 7.26 16.18 4.75 6.16 10.75 5.99 15.14 7.91 10.64 13.02 4.93 3.01 13.77 11.76 7.88 19.81 20.72 7.39 22.76 3.01 5.73 1.13 10 E1_Da NovelBoundary 0 28.23 6.12 20.79 11.82 17.06 0.00 15.24 12.77 1.74 22.73 4.69 0.00 6.82 16.19 0.00 0.00 9.54 31.75 3.95 23.59 0.00 0.00 3.93 11 E1a_E2a KnownJunction 0 3.78 3.35 4.38 0.00 3.57 0.00 0.00 3.45 1.56 2.93 7.69 0.00 0.00 0.00 5.19 0.00 4.11 7.92 0.00 3.26 0.00 0.00 0.00 12 E1a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E2_Aa NovelBoundary 0 16.89 8.55 18.57 21.08 20.46 0.00 4.06 10.31 5.73 20.04 2.68 24.61 6.82 19.07 9.27 10.42 12.62 37.31 8.85 35.92 0.00 0.00 7.85 14 ER2a ExonRegion 0 8.21 7.16 8.01 1.09 10.54 0.22 4.85 6.05 1.56 7.09 10.01 3.64 0.00 5.98 4.70 4.34 7.53 9.35 9.68 17.45 1.54 0.46 4.29 15 E2_Da NovelBoundary 0 0.00 3.35 11.56 5.53 0.00 5.00 8.70 0.00 3.41 7.36 1.95 0.00 0.00 9.71 9.64 4.36 17.48 5.93 0.00 2.94 0.00 0.00 3.93 16 E2a_E3a KnownJunction 0 21.86 19.47 10.47 3.86 19.61 0.00 8.17 11.54 3.15 9.08 7.53 0.00 0.00 2.47 4.45 4.36 8.60 14.18 12.89 26.27 3.15 2.57 4.35 17 E3_Aa NovelBoundary 0 0.00 8.55 12.33 18.71 0.00 10.90 2.25 1.97 2.66 10.02 6.90 6.30 0.00 12.36 4.45 3.42 13.09 8.91 8.66 12.21 0.00 0.00 0.00 18 ER3a ExonRegion 0 11.62 17.80 5.65 5.05 11.41 15.60 8.94 9.46 3.25 11.47 9.60 4.25 0.00 14.22 8.55 7.20 7.99 14.23 2.85 16.87 4.56 6.29 4.02 19 E3_Da NovelBoundary 0 13.63 19.21 19.28 3.33 27.50 5.05 36.13 3.90 7.55 15.26 5.37 13.50 20.45 19.66 6.30 23.75 9.44 39.55 9.41 23.65 0.00 0.00 4.35 20 E3a_E4a KnownJunction 0 16.45 15.98 4.32 8.32 0.00 2.67 8.35 11.95 4.60 16.01 10.11 6.30 0.00 4.94 5.19 3.42 3.83 9.53 0.00 15.92 0.00 9.12 0.00 21 E4_Aa NovelBoundary 0 7.04 26.71 16.97 12.85 11.71 0.00 14.62 4.11 9.06 11.98 10.53 0.00 0.00 14.72 10.63 0.00 4.30 4.10 22.40 11.82 2.35 0.00 0.00 22 ER4a ExonRegion 0 10.90 23.90 16.86 7.65 10.35 7.34 12.69 7.10 8.32 17.39 13.66 10.91 2.70 21.10 11.92 13.80 14.51 22.25 2.73 30.08 3.06 2.78 3.20 23 E4_Da NovelBoundary 0 2.96 8.49 10.02 5.49 0.00 2.44 1.81 4.35 5.90 7.23 0.00 0.00 8.28 2.47 10.26 7.60 17.95 15.50 0.00 15.40 2.47 0.00 0.00 24 E4a_E5a KnownJunction 0 16.82 18.88 28.89 8.99 11.97 13.57 12.63 5.91 17.45 16.33 19.95 6.30 0.00 28.96 10.75 11.19 17.67 22.92 4.80 24.48 0.00 10.65 3.50 25 I4 Intron 0 5.82 8.24 15.46 4.55 9.68 4.25 10.06 7.08 2.53 9.02 3.50 2.04 3.15 4.91 4.46 6.67 8.60 10.04 5.78 13.85 0.16 0.45 1.70 26 I4_SR1 SilentIntronRegion 0 5.83 8.26 15.50 4.57 9.71 4.26 10.08 7.10 2.54 9.05 3.51 2.05 3.16 4.93 4.47 6.68 8.62 10.07 5.80 13.89 0.16 0.45 1.70 27 E5_Aa NovelBoundary 0 20.52 18.29 15.61 5.83 11.54 0.00 13.38 1.97 2.92 10.42 4.79 0.00 0.00 4.94 5.19 8.72 11.50 10.53 9.60 12.59 0.00 0.00 0.00 28 ER5a ExonRegion 0 14.19 19.03 25.63 12.02 13.24 7.41 12.39 12.46 9.02 19.11 15.18 3.78 0.00 17.61 12.77 7.79 14.07 17.82 6.07 25.78 1.99 6.25 4.54 29 E5a_E6a KnownJunction 0 6.00 21.64 18.18 6.53 8.32 2.90 4.46 10.23 10.39 15.71 15.11 12.15 0.00 9.54 14.59 7.95 4.68 21.89 0.00 26.72 8.59 0.00 0.00 30 E6_Aa NovelBoundary 0 3.56 6.64 6.80 1.30 0.00 0.00 1.72 4.03 3.15 5.61 0.00 6.00 0.00 0.00 10.63 3.50 0.00 16.25 0.00 2.62 0.00 0.00 0.00 31 ER6a ExonRegion 0 9.07 29.38 25.67 10.39 6.74 4.75 7.75 5.80 9.22 12.19 17.57 6.73 0.00 23.11 20.52 12.68 10.73 24.38 0.00 27.93 2.68 1.12 1.73 32 E6_Da NovelBoundary 0 3.19 0.00 9.43 1.93 0.00 0.00 5.30 4.85 6.60 4.89 0.00 0.00 0.00 4.24 4.45 3.76 8.70 19.15 0.00 11.19 0.00 0.00 4.27 33 E6a_E7b KnownJunction 0 27.12 25.39 32.17 18.61 4.24 5.00 5.92 8.05 10.19 17.08 21.11 6.30 0.00 15.01 28.56 14.70 19.82 19.57 0.00 37.71 0.00 3.12 4.18 34 E7_Aa NovelBoundary 0 14.30 0.00 6.36 0.00 4.33 2.78 6.67 2.55 3.91 1.99 0.00 0.00 0.00 2.47 0.00 8.46 0.00 11.44 0.00 8.88 0.00 0.00 0.00 35 ER7a ExonRegion 0 2.12 3.16 3.00 1.67 0.59 0.41 2.80 0.77 1.10 2.93 2.36 0.48 0.00 2.53 2.58 1.98 1.83 2.87 0.00 6.38 0.00 0.23 0.33 36 ER7b ExonRegion 0 28.85 33.87 22.91 12.01 6.84 5.32 7.34 14.30 10.06 15.57 18.09 2.47 0.00 18.00 17.82 14.82 12.50 28.88 4.51 42.58 7.43 4.76 4.70 37 E7_Da KnownBoundary 0 9.93 0.00 5.29 0.00 6.45 0.00 0.00 4.07 4.86 1.10 0.00 0.00 0.00 0.00 0.00 7.60 11.87 8.83 0.00 11.82 0.00 0.00 4.10 38 E7a_E7d KnownJunction 0 20.97 36.51 27.82 12.59 7.47 11.07 5.61 18.48 4.63 8.62 17.16 6.30 0.00 22.72 14.96 8.46 4.77 17.20 9.60 27.04 17.05 8.33 3.84 39 ER7c ExonRegion 0 4.10 10.51 3.77 4.03 12.53 0.98 6.72 4.64 3.94 4.88 4.50 0.50 0.00 2.39 6.69 2.28 6.46 10.97 1.71 13.35 0.00 0.00 2.44 40 E7_Ac KnownBoundary 0 0.00 9.87 5.35 8.22 37.95 0.00 8.57 2.51 4.34 10.48 4.84 0.00 0.00 0.00 13.35 0.00 4.30 11.23 0.00 12.14 0.00 0.00 0.00 41 E7_Ad KnownBoundary 0 3.78 0.00 8.69 3.06 8.66 0.00 5.56 5.09 0.00 4.70 0.00 12.60 0.00 5.06 6.30 4.27 0.00 2.57 0.00 15.15 0.00 0.00 4.35 42 ER7d ExonRegion 0 3.28 6.91 9.68 7.97 28.63 0.37 7.75 6.05 2.96 11.01 3.58 8.44 0.00 3.98 9.72 3.27 2.64 12.01 0.48 18.62 0.66 0.31 3.23 43 ER7e ExonRegion 0 12.19 27.05 32.97 17.36 11.84 6.33 8.61 15.75 9.43 20.59 20.42 3.63 0.14 20.93 21.28 14.17 15.30 25.89 4.92 44.83 4.74 1.33 5.75 44 E7b_E8a KnownJunction 0 9.56 19.01 26.40 21.31 12.65 7.21 0.00 24.32 3.94 17.70 2.37 6.30 0.00 14.36 17.80 11.88 4.58 16.58 0.00 36.43 5.87 0.00 4.10 45 E8_Aa NovelBoundary 0 12.82 5.99 16.74 3.73 4.07 0.00 4.02 4.97 1.36 5.61 6.26 17.71 6.82 5.47 20.27 0.00 0.00 7.96 8.28 5.43 0.00 0.00 6.91 46 ER8a ExonRegion 0 23.63 32.20 35.28 16.72 14.38 1.57 14.59 27.08 4.12 20.50 13.13 6.85 7.91 16.55 12.93 30.71 9.56 29.37 10.68 37.06 7.80 7.21 9.91 47 E8_Da KnownBoundary 0 41.93 61.77 43.61 19.18 11.04 0.00 27.95 35.57 9.61 27.37 29.53 11.85 0.00 22.43 11.74 25.21 15.61 44.11 31.25 53.05 8.96 11.76 15.62 48 ER8b ExonRegion 0 22.77 39.62 42.28 22.12 20.07 13.98 15.71 26.24 10.84 31.99 23.40 4.46 0.00 24.80 20.57 12.38 15.90 41.60 13.80 50.39 2.24 3.22 9.17 49 E8_Db KnownBoundary 0 7.26 6.25 29.98 12.45 6.62 0.00 1.77 11.58 4.40 2.39 2.58 0.00 0.00 2.47 13.35 12.99 4.02 17.99 22.02 24.86 0.00 0.00 4.18 50 E8b_E8b KnownJunction 0 24.60 25.26 33.80 11.09 24.62 2.78 21.20 13.68 9.17 25.38 17.95 0.00 0.00 16.89 26.70 8.37 4.77 20.19 7.15 35.79 3.15 2.82 11.18 51 ER8c ExonRegion 0 13.91 13.32 27.62 9.80 5.68 1.06 10.26 11.46 4.22 13.00 3.62 2.42 2.44 3.77 10.21 8.83 12.92 19.37 12.45 16.30 0.36 0.13 4.16 52 E8_Ab KnownBoundary 0 29.63 21.05 25.37 8.89 19.78 2.61 16.25 15.90 5.64 11.66 2.26 0.00 0.00 4.94 17.80 19.40 12.34 14.80 0.00 23.78 2.84 2.69 0.00 53 ER8d ExonRegion 0 17.07 43.72 48.76 18.33 38.80 7.28 25.97 23.03 13.98 25.90 24.38 1.89 0.00 17.94 32.52 23.92 18.74 39.94 8.63 45.47 4.94 3.26 16.86 54 E8_Dc KnownBoundary 0 6.37 26.38 32.76 8.79 32.77 10.90 7.82 13.14 6.45 18.27 1.95 7.65 0.00 4.94 4.45 12.30 0.00 17.00 4.80 35.73 0.00 0.00 11.52 55 E8c_E9a KnownJunction 0 6.45 15.19 3.34 11.62 11.88 7.44 2.25 8.75 6.45 3.63 12.90 0.00 0.00 16.89 18.17 10.94 8.88 23.88 0.00 8.95 0.00 5.33 7.51 56 ER8e ExonRegion 0 13.29 15.25 41.87 14.32 18.17 2.50 13.86 13.87 7.70 18.27 6.85 0.59 2.23 10.28 14.83 13.18 2.26 17.25 7.74 40.38 0.63 1.80 4.96 57 E8_Dd KnownBoundary 0 17.41 15.19 22.32 2.90 20.12 6.47 18.68 5.91 8.62 6.80 2.53 0.00 0.00 14.30 15.08 7.43 4.68 12.31 0.00 43.14 0.00 0.00 3.24 58 ER8f ExonRegion 0 12.74 10.87 9.84 7.20 15.05 4.33 14.39 6.76 2.96 4.26 4.86 0.00 3.98 8.30 17.55 11.44 6.17 9.24 3.28 15.37 1.14 1.07 1.72 59 E8_De NovelBoundary 0 92.76 80.25 48.34 22.81 24.62 5.39 23.41 14.05 4.43 21.79 4.32 6.00 0.00 9.54 4.45 19.57 4.68 10.57 17.22 24.16 0.00 3.06 0.00 60 I8_SR1 SilentIntronRegion 0 10.53 13.91 1.14 0.00 11.65 2.28 10.67 1.60 0.00 2.11 4.81 0.00 2.40 4.22 5.63 1.85 2.05 1.69 0.00 10.56 0.00 2.59 0.00 61 E9_Aa NovelBoundary 0 22.52 12.50 18.07 10.59 3.65 0.00 12.81 5.42 4.25 7.39 2.68 0.00 0.00 9.77 10.14 0.00 4.11 15.67 0.00 29.98 0.00 0.00 0.00 62 ER9a ExonRegion 0 8.87 17.25 31.99 16.56 15.45 8.32 11.86 14.79 8.37 21.31 15.02 5.39 7.47 14.27 22.62 13.80 10.37 21.32 7.17 36.47 3.02 5.62 2.37