Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GNL3L Gene 0 93.95 95.49 195.18 99.99 106.29 41.25 80.58 73.22 81.62 111.04 141.65 117.56 143.46 151.03 257.61 213.60 170.26 115.12 148.28 115.00 75.58 83.04 105.67 2 396246 Transcript 0 52.48 59.43 89.85 51.49 60.50 24.43 48.55 40.34 42.90 57.29 63.31 62.40 74.87 69.89 127.78 94.65 76.86 45.85 79.72 56.51 30.95 45.01 49.36 3 336470 Transcript 0 49.60 66.70 31.71 29.18 59.42 41.01 72.67 16.20 11.72 30.55 31.92 0.00 0.00 24.32 24.30 52.63 27.58 55.15 38.16 43.63 26.07 16.08 39.65 4 360845 Transcript 1 123.67 69.43 30.81 8.76 56.19 8.65 57.88 13.83 30.00 31.62 151.32 0.00 4.69 103.02 121.02 210.17 196.64 42.23 96.02 91.19 51.00 38.69 88.10 5 396243 Transcript 0 816.05 863.99 4172.69 4211.21 768.14 573.51 1101.12 3987.93 3848.42 3373.19 330.17 226.42 211.78 113.09 309.95 887.52 724.98 5624.13 761.06 1137.90 561.16 346.97 794.65 6 489691 Transcript 0 0.31 0.31 0.01 0.01 0.01 0.00 0.59 0.00 0.00 0.00 0.00 1.64 0.27 0.24 0.01 0.44 1.47 0.00 0.00 0.00 0.00 0.00 0.87 7 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 ER2a ExonRegion 0 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 1.17 0.00 0.36 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 9 E3_Ab NovelBoundary 0 60.83 108.01 10.50 22.91 40.41 42.48 81.48 14.58 15.10 23.64 23.11 0.00 0.00 26.78 36.71 46.57 30.01 44.98 75.67 58.68 34.97 10.35 67.95 10 ER3a ExonRegion 0 18.52 44.74 4.94 10.01 17.64 15.99 32.89 7.13 9.03 9.82 9.72 0.00 0.00 12.03 16.59 19.04 11.97 22.63 30.96 25.07 13.29 4.36 31.84 11 ER3b ExonRegion 1 99.37 131.44 44.99 40.25 117.24 108.35 133.19 21.69 29.93 47.81 62.53 0.00 0.47 93.71 75.58 137.66 83.35 98.27 102.52 92.27 52.41 51.78 115.70 12 E3_Da KnownBoundary 0 7.26 3.22 11.77 0.00 15.79 0.00 10.38 0.00 7.09 4.06 11.53 0.00 0.00 16.66 31.77 16.66 28.05 4.89 12.42 15.98 0.00 8.63 24.33 13 E3a_E4a KnownJunction 0 80.68 88.67 58.48 48.35 101.19 66.04 112.44 25.26 14.41 51.28 54.12 0.00 0.00 36.61 32.02 86.22 43.20 87.67 45.37 62.19 38.86 27.80 47.46 14 E3_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E3_Ad KnownBoundary 1 139.95 69.07 22.41 8.86 64.60 4.77 62.89 13.84 22.80 26.75 155.62 0.00 0.00 47.32 97.66 220.37 189.06 41.95 84.14 88.84 45.22 34.17 74.95 16 ER3c ExonRegion 1 123.67 69.43 30.81 8.76 56.19 8.65 57.88 13.83 30.00 31.62 151.32 0.00 4.69 103.02 121.02 210.17 196.64 42.23 96.02 91.19 51.00 38.69 88.10 17 ER3d ExonRegion 1 165.09 79.31 36.76 13.63 72.25 11.00 75.80 13.83 37.98 41.00 200.06 6.49 4.69 127.49 148.69 262.29 255.82 53.12 117.86 102.13 71.62 56.26 92.50 18 ER3e ExonRegion 1 74.46 26.97 26.03 8.91 29.48 3.41 30.15 9.03 26.42 27.24 95.15 25.85 38.58 51.11 67.69 133.30 132.85 29.77 39.82 40.71 37.23 25.12 33.22 19 E3b_E4a KnownJunction 1 10.30 0.00 30.60 2.06 0.00 0.00 0.00 4.27 24.54 17.89 36.75 11.10 83.27 21.84 42.77 18.29 49.56 0.00 0.00 10.48 20.57 0.00 6.83 20 ER4a ExonRegion 1 28.35 36.48 89.54 35.56 57.41 23.45 37.57 35.09 59.25 72.20 201.93 62.78 72.41 87.26 67.21 113.21 262.82 68.84 81.71 98.74 87.61 25.03 36.57 21 E4a_E5b KnownJunction 0 6.45 12.10 111.73 52.07 31.49 8.63 14.53 48.63 69.94 93.72 164.46 54.32 54.38 155.04 134.00 155.34 233.10 82.74 133.84 115.88 84.88 62.83 42.51 22 ER5a ExonRegion 0 2.12 5.42 34.31 14.54 8.03 3.06 3.97 15.56 22.23 28.29 61.21 30.31 25.01 48.18 45.45 46.56 75.92 24.64 44.60 39.01 31.59 18.75 17.62 23 ER5b ExonRegion 0 23.28 45.24 137.12 71.47 47.24 11.03 28.87 48.99 69.21 114.20 173.90 115.33 54.82 169.44 219.45 258.14 212.83 121.44 138.80 209.80 107.26 71.97 103.65 24 E5a_E6a KnownJunction 0 17.86 41.18 203.33 107.01 52.46 10.22 35.68 52.86 80.44 136.11 163.88 117.94 45.78 201.25 213.36 243.27 227.12 185.46 153.23 225.69 105.52 54.93 143.24 25 ER6a ExonRegion 0 26.10 57.62 156.60 82.39 123.43 39.70 88.83 65.17 70.21 108.75 169.50 157.62 76.73 213.42 195.46 278.42 205.45 141.39 116.86 171.14 127.55 68.97 149.52 26 E6a_E7a KnownJunction 0 82.09 176.02 191.77 84.70 234.89 144.24 168.13 59.27 70.40 128.96 252.54 289.74 132.13 236.33 201.62 232.33 220.94 114.62 111.06 226.97 169.52 59.09 136.75 27 ER7a ExonRegion 0 98.28 130.22 165.47 79.89 106.85 78.68 110.32 66.35 69.31 137.31 207.61 179.84 121.46 208.90 222.48 251.82 239.22 134.46 117.04 180.25 138.44 76.09 137.62 28 E7a_E8a KnownJunction 0 136.99 156.75 215.31 92.30 55.18 16.47 55.25 92.25 93.49 155.02 235.59 178.56 100.64 292.43 243.28 313.68 298.36 166.39 177.61 165.16 142.64 116.10 130.69 29 ER8a ExonRegion 0 105.98 104.85 207.31 109.86 87.60 23.23 70.28 91.61 80.09 137.82 257.97 211.83 100.50 296.65 233.93 334.97 324.35 188.56 210.84 152.30 167.80 87.38 170.57 30 E8a_E9a KnownJunction 0 93.94 82.68 183.94 127.42 81.49 41.23 69.11 102.32 77.95 163.62 223.64 183.81 102.27 218.73 217.81 361.70 332.02 211.70 208.10 138.25 140.91 103.48 142.04 31 ER9a ExonRegion 0 58.30 59.48 210.48 90.48 79.47 32.87 52.31 86.75 85.47 142.79 200.07 146.21 115.32 220.61 230.91 311.37 301.89 179.10 175.90 153.61 139.01 89.25 153.16 32 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 E9a_E11a KnownJunction 0 67.42 64.73 215.40 127.92 83.79 32.94 88.19 123.76 105.64 172.83 227.64 144.05 126.29 296.02 300.76 457.91 374.29 247.97 199.44 226.14 163.52 71.52 208.97 34 ER10a ExonRegion 0 0.94 0.92 0.02 0.04 0.02 0.00 1.78 0.00 0.01 0.01 0.00 4.93 0.82 0.73 0.03 1.32 4.42 0.00 0.00 0.00 0.00 0.00 2.60 35 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER11a ExonRegion 0 44.91 55.01 216.74 105.45 61.73 39.87 83.40 81.22 90.46 158.69 230.52 116.85 108.25 234.80 245.56 324.65 322.50 218.88 178.48 176.32 157.98 84.13 170.41 37 E11b_E12a KnownJunction 1 65.42 72.22 270.87 130.52 88.79 31.18 56.04 94.84 98.96 144.92 196.84 38.11 41.39 287.95 289.51 355.29 311.17 228.91 166.50 191.75 144.19 93.44 174.82 38 ER11b ExonRegion 1 50.27 65.07 238.03 112.44 98.33 27.05 51.97 92.04 98.50 133.33 206.34 55.20 76.21 263.11 258.21 329.91 292.95 231.89 172.01 168.62 143.24 81.26 143.90 39 ER12a ExonRegion 1 73.04 68.40 221.59 100.31 78.45 27.47 51.58 77.41 94.69 137.22 214.07 64.02 65.27 247.01 263.37 339.40 265.39 210.97 155.38 164.75 148.65 83.48 151.61 40 E12a_E13a KnownJunction 0 62.60 41.83 206.91 59.03 61.88 29.64 30.96 59.23 64.00 105.22 133.45 56.42 52.43 142.33 193.96 203.11 185.88 126.23 138.45 145.41 123.99 63.32 100.13 41 I12 Intron 0 25.44 6.85 22.20 18.50 17.52 3.33 19.14 7.71 8.90 12.69 6.92 16.37 24.37 6.52 21.95 16.44 17.37 17.55 16.42 17.68 12.36 6.62 11.06 42 I12_SR2 SilentIntronRegion 0 25.68 6.93 22.54 18.78 17.79 3.38 19.40 7.78 9.01 12.87 6.99 16.63 24.74 6.62 22.22 16.65 17.61 17.73 16.64 17.84 12.46 6.67 11.09 43 E13_Aa NovelBoundary 0 13.71 8.68 6.74 6.09 3.57 0.00 7.86 5.59 7.55 21.76 4.42 0.00 6.01 13.89 17.80 11.62 16.92 32.13 25.13 21.73 15.88 2.33 3.59 44 ER13a ExonRegion 1 49.11 71.59 179.28 84.64 67.78 24.71 54.00 57.51 73.04 123.21 173.13 52.30 55.91 196.15 243.80 276.10 227.05 187.08 167.41 139.80 116.00 65.96 132.92 45 E13a_E14a KnownJunction 0 50.23 106.10 247.33 89.43 80.14 51.05 122.37 76.19 93.84 175.84 230.48 89.28 67.04 248.69 368.38 385.88 270.22 271.98 161.42 166.57 159.32 97.54 190.87 46 ER14a ExonRegion 0 47.77 58.35 197.03 77.60 74.69 41.70 61.82 61.31 81.69 138.71 174.99 87.31 81.37 205.54 290.69 289.71 232.10 245.05 170.63 136.07 142.12 74.77 127.67 47 E14a_E15a KnownJunction 1 34.97 59.92 258.98 100.75 54.75 37.88 71.23 89.05 117.88 216.45 221.42 68.72 80.19 253.87 367.64 338.97 232.63 255.89 208.85 155.45 156.42 101.28 148.45 48 ER15a ExonRegion 0 59.63 61.11 237.19 93.92 81.28 35.15 67.82 76.40 103.98 176.20 198.30 77.72 123.15 224.54 302.72 288.03 230.97 205.33 161.83 144.81 139.84 74.53 119.36 49 E15a_E16a KnownJunction 0 191.00 127.21 291.47 121.16 154.92 53.32 130.41 112.79 132.46 223.44 238.06 100.23 223.20 315.21 460.72 376.23 258.44 242.38 260.15 183.57 185.95 139.18 174.74 50 E16_Aa NovelBoundary 0 24.60 3.35 10.11 10.19 12.22 2.16 6.76 13.92 6.48 3.33 10.27 0.00 6.82 2.41 8.90 12.22 17.95 32.91 46.68 15.02 14.02 3.12 21.60 51 ER16a ExonRegion 0 70.08 59.69 317.70 144.91 72.34 41.55 69.53 87.24 120.87 159.80 260.81 103.88 182.19 281.89 369.26 378.76 292.89 208.54 211.19 170.03 186.35 104.48 132.45 52 E16a_E17a KnownJunction 0 58.23 91.30 274.77 160.42 42.87 42.36 42.26 70.15 137.85 133.18 201.00 79.83 187.49 196.19 371.59 323.33 210.75 260.45 130.73 139.28 141.72 97.91 88.52 53 I16_AR3 ActiveIntronRegion 0 6.35 3.81 4.90 5.45 21.07 0.00 6.62 8.64 8.95 9.18 7.73 17.32 13.48 6.50 13.42 2.97 16.09 3.00 9.56 20.21 17.35 10.42 14.68 54 I16_AR4 ActiveIntronRegion 0 4.66 2.03 3.68 5.04 13.91 0.55 5.43 7.61 9.88 8.26 7.92 9.52 5.16 3.41 11.02 2.97 16.50 3.70 2.23 21.91 18.73 10.00 12.92 55 ER17a ExonRegion 0 117.14 84.76 342.26 135.26 88.95 35.90 73.75 90.07 133.72 142.20 233.02 118.45 187.71 244.96 381.76 339.70 286.77 202.59 173.43 172.27 153.21 94.56 130.52 56 E17a_E18a KnownJunction 0 181.29 121.56 293.43 151.50 78.52 24.64 73.49 92.38 126.59 125.04 231.06 98.28 136.84 250.87 387.42 248.31 277.05 156.69 156.15 214.25 158.52 79.48 94.75 57 ER18a ExonRegion 0 90.73 84.16 302.43 137.90 86.62 40.51 58.25 73.00 99.64 112.62 134.46 96.25 115.87 175.75 308.54 274.57 185.36 157.71 162.19 139.86 91.42 80.06 112.59 58 E18a_E19a KnownJunction 1 78.61 44.66 480.38 259.01 53.99 21.29 32.95 118.50 128.24 141.59 135.67 92.13 65.74 283.30 472.22 840.21 218.89 331.59 606.51 176.35 78.52 270.28 279.82 59 ER19a ExonRegion 0 138.06 103.89 402.32 162.26 96.02 46.05 73.44 90.52 97.48 138.87 232.59 98.85 88.26 206.60 362.49 383.26 240.19 227.45 317.70 122.80 108.27 127.45 164.01 60 E19_Da KnownBoundary 0 70.90 89.00 170.19 69.12 61.80 42.53 33.87 49.90 36.28 41.53 106.29 54.47 72.56 140.68 293.34 171.24 159.42 90.04 100.24 77.34 38.86 34.41 111.57 61 E19a_E19b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 62 E19_Db KnownBoundary 0 3.78 5.99 17.95 4.10 12.99 8.18 7.60 0.00 6.94 10.42 13.06 23.71 14.77 31.26 31.40 22.73 49.28 16.13 84.52 28.57 0.00 11.88 32.78 63 ER19b ExonRegion 0 36.87 40.35 102.42 45.91 22.25 19.01 13.59 28.02 24.77 26.92 73.25 46.03 46.41 115.14 231.95 112.00 135.16 66.42 100.26 55.77 23.08 29.39 79.91 64 ER19c ExonRegion 0 22.14 23.64 45.50 26.39 26.02 18.78 27.02 27.46 36.46 28.20 43.49 58.07 57.73 63.69 133.16 71.30 89.79 64.83 91.56 52.73 25.03 31.05 71.42 65 E19_Dc KnownBoundary 0 76.16 67.82 46.39 14.88 70.63 13.12 35.37 23.86 16.15 23.53 47.70 20.11 34.41 60.86 38.20 79.89 64.14 19.57 137.13 16.30 29.41 16.84 17.67 66 ER19d ExonRegion 0 83.39 110.44 282.66 140.01 143.75 51.07 86.69 85.13 93.70 124.69 174.78 119.95 116.21 159.96 307.48 274.19 196.67 165.31 206.28 114.28 90.50 94.03 128.04 67 E19_Ab KnownBoundary 0 96.46 88.27 248.54 239.03 112.39 30.61 127.10 152.51 196.82 195.07 49.12 52.22 51.78 24.55 100.50 140.65 88.27 332.83 193.89 133.52 79.51 65.76 149.13 68 ER19e ExonRegion 0 72.83 63.54 220.92 102.54 115.89 45.94 87.58 72.72 88.05 112.48 171.39 125.75 202.08 177.75 407.32 288.27 201.85 153.36 200.71 164.97 86.73 86.20 158.81 69 E19_Dd KnownBoundary 0 87.27 62.09 164.66 91.43 64.18 76.60 120.83 115.46 78.56 121.95 74.70 66.47 100.81 107.48 169.73 143.81 95.00 115.95 90.83 116.52 22.49 47.33 92.19 70 E19d_E19c KnownJunction 1 25.71 53.41 21.11 48.18 27.76 12.95 26.94 15.94 25.26 32.85 7.74 28.81 56.49 4.53 19.90 11.96 8.32 23.96 8.00 30.62 22.24 8.33 29.96 71 E19d_E19d NovelJunction 1 6.52 12.50 28.30 26.47 0.00 26.58 33.17 24.07 13.37 21.11 5.11 24.46 39.28 4.77 0.00 20.51 4.68 29.85 18.26 15.28 2.84 0.00 4.01 72 ER19f ExonRegion 1 162.81 140.81 199.12 112.69 151.03 47.29 109.12 93.74 91.36 128.16 134.96 184.11 268.14 147.09 282.77 175.19 152.41 61.10 130.26 105.62 48.96 108.44 92.98 73 E19_Ac KnownBoundary 0 448.67 422.82 317.73 188.39 343.80 281.77 423.96 220.03 377.05 160.07 148.99 96.03 156.65 146.21 186.66 397.76 349.04 270.61 425.33 334.67 169.39 185.90 329.50 74 ER19g ExonRegion 0 55.60 48.34 45.58 37.67 59.48 47.33 82.57 46.79 40.40 35.82 57.47 69.03 58.05 87.83 165.99 142.40 76.47 74.97 87.99 82.56 36.02 49.25 73.07 75 E19_De KnownBoundary 0 1059.08 911.09 570.20 601.95 1057.13 736.05 1417.45 660.55 593.25 512.18 365.36 339.26 427.41 274.41 553.68 957.78 741.75 771.45 944.97 1119.38 787.97 419.94 889.23 76 E19e_E19d KnownJunction 0 2422.43 2538.56 12496.96 12585.45 2276.66 1707.60 3276.43 11947.86 11519.99 10086.72 982.78 650.46 578.86 334.75 909.95 2650.59 2166.62 16848.44 2275.17 3383.07 1661.26 1032.58 2353.97 77 ER19h ExonRegion 0 78.05 78.69 44.91 33.01 60.89 46.55 77.48 38.18 40.34 49.13 60.78 51.42 60.22 114.69 224.99 140.99 91.16 56.61 136.83 86.38 40.58 65.91 92.60 78 E19_Ad KnownBoundary 0 207.00 239.96 251.09 249.75 272.84 185.01 272.70 182.49 201.53 184.57 97.97 70.82 60.55 57.45 143.77 216.52 147.92 216.68 230.12 263.02 96.81 114.51 205.47 79 ER19i ExonRegion 0 68.03 123.65 143.16 114.83 95.75 30.48 85.02 79.77 109.27 117.36 65.94 77.93 93.63 81.22 194.75 84.39 67.54 38.70 68.33 127.43 21.91 74.25 47.98 80 E19_Df KnownBoundary 0 35.12 136.75 78.53 101.35 53.40 14.20 54.41 75.86 102.63 112.07 16.95 44.26 54.87 16.83 62.30 26.57 30.95 9.82 43.86 101.76 8.03 44.03 15.28 81 ER19j ExonRegion 1 41.01 80.64 67.49 60.17 59.77 23.08 62.56 49.75 52.68 70.74 11.21 51.03 53.34 19.29 33.39 25.59 21.83 13.08 40.06 50.29 5.01 27.95 14.29