Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SHROOM4 Gene 0 11.16 4.91 12.82 8.93 10.84 5.12 4.78 10.25 15.77 10.38 0.31 0.46 0.70 0.64 1.76 0.51 0.62 2.11 2.00 3.67 6.28 15.70 14.56 2 289292 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 376020 Transcript 0 17.10 6.90 18.61 13.05 14.84 6.73 6.36 11.46 12.23 10.44 0.06 0.20 0.00 0.00 0.00 0.00 0.00 1.94 1.81 3.00 4.10 16.38 13.83 4 460112 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 484922 Transcript 0 0.00 1.09 0.00 1.42 0.95 0.00 0.71 0.00 0.35 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 1.14 0.38 0.00 0.04 0.00 6 421638 Transcript 0 0.72 0.41 3.48 1.63 2.53 0.50 0.36 3.12 4.58 6.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.28 1.19 7 483955 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 477217 Transcript 0 25.18 5.36 15.14 21.52 15.58 4.43 3.94 16.30 9.52 5.82 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.81 0.00 1.64 0.48 5.31 2.32 9 ER1a ExonRegion 0 0.00 0.00 0.33 0.02 0.00 1.31 0.00 0.00 0.35 1.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 2.28 3.30 5.87 6.57 10 E1a_E2a KnownJunction 0 0.00 0.00 3.90 0.00 0.00 0.00 0.00 2.30 2.95 2.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 2.59 11.51 16.13 11 ER2a ExonRegion 0 0.00 0.00 2.23 0.72 0.90 0.00 0.91 0.86 4.79 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 1.07 3.82 7.48 10.84 10.78 12 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E2a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 4.33 0.00 0.00 0.00 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 2.90 5.33 15.79 14 ER3a ExonRegion 0 0.00 2.18 0.00 2.84 1.91 0.00 1.42 0.00 0.69 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 2.27 0.76 0.00 0.09 0.00 15 ER4a ExonRegion 0 1.44 0.83 3.54 1.96 1.76 0.99 0.72 3.70 6.24 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.57 2.39 16 E4a_E5a KnownJunction 0 0.00 0.00 3.43 1.30 3.31 0.00 0.00 2.55 2.92 9.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 ER5a ExonRegion 0 0.96 0.00 2.57 3.71 0.16 0.29 1.35 4.28 12.14 8.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 4.60 8.75 7.89 7.37 18 E5a_E6a KnownJunction 0 3.04 0.00 2.25 4.93 0.00 2.90 1.90 9.16 17.97 8.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.95 0.00 0.00 2.53 11.21 12.80 19 ER6a ExonRegion 0 5.17 1.92 7.42 3.75 6.07 2.49 1.79 7.97 19.14 10.03 0.00 0.00 0.00 0.00 0.00 0.00 0.08 1.45 0.77 2.89 8.42 18.62 15.44 20 E6_Da KnownBoundary 0 18.23 9.01 26.88 22.01 32.51 2.61 10.73 23.33 30.58 17.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.20 11.24 93.81 30.99 21 ER6b ExonRegion 0 5.69 2.96 16.10 7.63 6.27 4.74 5.38 18.13 26.24 13.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 1.01 3.68 7.70 26.31 22.93 22 E6b_E7a KnownJunction 0 3.48 0.00 18.12 1.96 4.16 5.74 4.24 9.08 25.95 9.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.52 3.07 11.68 13.10 19.89 23 ER7a ExonRegion 0 5.70 0.69 15.59 3.12 14.76 5.59 2.35 7.44 17.29 11.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.32 1.92 8.42 16.00 13.93 24 E7a_E8a KnownJunction 0 6.22 3.35 14.61 6.66 31.92 15.05 1.99 8.34 19.44 20.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.88 5.93 39.92 12.63 25 ER8a ExonRegion 0 6.92 2.89 7.22 5.89 6.07 3.08 2.31 7.42 16.63 7.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.98 1.01 3.18 7.93 12.45 15.03 26 E8a_E9a KnownJunction 0 21.93 9.21 7.86 6.19 3.31 5.39 2.08 12.65 12.33 8.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 9.27 5.88 36.19 27 ER9a ExonRegion 0 8.03 3.11 15.11 8.85 6.96 4.15 3.62 12.65 19.15 13.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.90 3.01 6.10 17.67 21.24 28 E9a_E10a KnownJunction 0 6.59 8.95 23.36 9.36 14.18 2.21 1.68 9.24 28.18 14.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.49 0.00 7.86 7.72 19.72 39.69 29 ER10a ExonRegion 0 7.88 5.40 16.14 12.42 10.71 5.60 5.08 10.27 27.71 16.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.48 0.60 3.28 15.41 20.96 18.52 30 E10a_E11a KnownJunction 0 14.15 5.46 17.03 12.15 16.21 7.72 3.71 10.15 20.28 6.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.14 0.00 0.00 18.29 28.23 15.37 31 ER11a ExonRegion 0 11.37 5.26 17.46 11.20 13.24 7.41 4.56 15.20 25.39 19.68 0.00 0.00 0.00 0.00 0.00 0.83 0.00 4.13 6.25 5.18 10.46 23.48 22.75 32 E11_Ab KnownBoundary 0 19.26 5.99 12.86 10.82 7.39 0.00 1.85 18.48 22.19 15.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.38 0.00 2.94 17.30 14.27 30.82 33 ER11b ExonRegion 0 9.33 5.34 10.00 9.63 17.44 8.16 4.65 12.90 22.90 11.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.83 0.47 2.20 8.47 12.92 18.79 34 E11_Da KnownBoundary 0 34.75 9.14 9.08 11.19 8.32 17.09 8.48 20.50 17.68 14.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 2.88 5.75 16.84 12.89 35 E11a_E11d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER11c ExonRegion 0 23.40 8.61 6.97 8.33 6.13 10.14 9.34 12.70 17.49 10.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.31 2.08 4.22 4.85 21.10 13.03 37 E11_Ac KnownBoundary 0 10.37 9.74 2.60 5.19 8.15 5.68 12.98 2.55 14.44 4.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.42 2.43 3.15 25.72 16.99 38 ER11d ExonRegion 0 7.49 6.89 4.67 5.12 15.76 9.54 6.25 3.17 6.61 5.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 3.27 2.78 13.27 5.76 39 E11_Ad KnownBoundary 0 21.19 23.02 12.54 10.19 36.33 27.65 8.88 7.97 10.13 11.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.02 8.59 23.51 0.00 40 ER11e ExonRegion 0 20.55 13.82 16.06 17.29 20.21 21.12 5.89 23.39 24.58 18.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 2.61 5.51 5.95 22.79 13.27 41 E11_Db KnownBoundary 0 30.08 12.63 4.82 15.72 4.33 21.52 10.29 23.66 22.97 8.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.52 6.33 14.21 37.41 19.21 42 E11b_E11e KnownJunction 0 0.00 0.00 4.88 6.63 8.57 0.00 3.97 1.89 4.20 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.84 43 ER11f ExonRegion 0 17.10 6.90 18.61 13.05 14.84 6.73 6.36 11.46 12.23 10.44 0.06 0.20 0.00 0.00 0.00 0.00 0.00 1.94 1.81 3.00 4.10 16.38 13.83 44 E11_Ae KnownBoundary 0 3.41 0.00 7.92 3.30 3.57 0.00 1.85 4.64 5.01 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 0.00 3.12 8.28 45 ER11g ExonRegion 0 22.77 15.48 13.92 9.32 22.90 8.94 19.05 11.51 13.79 11.35 6.60 8.99 15.58 14.73 40.37 10.47 13.87 8.73 11.58 17.64 6.48 7.94 16.79 46 E11_Dc KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47 ER11h ExonRegion 0 2.03 0.00 8.30 8.21 7.14 0.00 4.88 6.01 4.81 2.65 0.00 0.00 1.66 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 11.89 1.28 48 E11_Dd KnownBoundary 0 7.48 9.27 53.58 64.93 7.98 0.00 34.58 23.00 26.36 16.12 2.21 0.00 6.66 0.00 0.00 3.59 7.85 0.00 4.24 8.76 0.00 19.96 4.35 49 ER11i ExonRegion 0 25.18 5.36 15.14 21.52 15.58 4.43 3.94 16.30 9.52 5.82 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.81 0.00 1.64 0.48 5.31 2.32 50 IG37_AR1 ActiveIntergenicRegion 0 0.00 13.81 0.00 0.71 3.17 4.35 12.50 0.00 2.18 2.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28.90 45.52 49.18 0.00 0.00 0.00