Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CCDC120 Gene 0 15.26 32.80 73.62 37.68 17.83 28.52 14.92 39.37 33.40 38.63 0.53 7.69 7.93 1.46 3.54 11.36 14.43 55.78 37.19 31.38 26.53 19.90 19.11 2 376396 Transcript 0 12.10 25.69 49.32 27.90 13.35 14.65 11.08 21.27 15.76 19.90 0.41 4.60 4.78 1.10 3.14 7.67 9.04 29.90 22.30 19.37 15.00 14.13 11.93 3 482476 Transcript 0 4.44 3.10 8.75 1.47 5.23 4.60 4.11 6.48 3.68 5.94 0.00 0.00 1.60 0.00 0.68 1.92 1.03 13.48 7.77 7.21 4.24 2.52 3.92 4 422185 Transcript 0 0.00 4.21 0.55 2.88 0.00 3.58 0.00 9.14 13.50 5.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.40 0.00 0.00 0.00 0.00 0.00 5 496529 Transcript 0 6.59 3.35 81.19 21.48 0.00 28.51 9.89 41.32 22.83 37.74 0.00 0.00 7.30 0.00 0.00 7.78 9.54 36.11 3.58 28.83 19.83 4.90 28.85 6 IG10_SR3 SilentIntergenicRegion 0 11.17 5.06 7.38 5.21 2.62 2.07 2.20 9.68 7.20 5.91 0.00 4.36 0.17 0.00 0.49 2.79 5.14 19.72 18.17 12.70 5.78 3.42 3.53 7 IG10_AR3 ActiveIntergenicRegion 0 13.83 7.69 15.95 5.30 7.07 2.72 6.54 18.82 13.87 9.89 0.00 7.79 10.71 0.00 0.70 5.25 4.93 34.32 26.59 20.95 12.62 3.73 12.97 8 IG10_SR4 SilentIntergenicRegion 0 6.68 5.70 12.86 3.65 5.09 2.06 5.35 6.11 5.85 4.85 0.00 3.91 3.14 0.00 0.25 1.70 4.41 19.09 16.21 15.83 4.27 3.05 4.20 9 IG10_AR4 ActiveIntergenicRegion 0 4.88 6.39 15.00 6.50 3.96 4.85 4.64 8.91 6.90 6.28 0.00 6.45 3.50 0.22 0.67 2.55 7.13 5.50 6.01 10.84 1.20 3.13 4.15 10 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 1.19 0.88 0.02 2.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 2.82 0.00 1.30 1.95 11 E1a_E2b KnownJunction 0 3.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 I1_SR1 SilentIntronRegion 0 4.13 5.10 13.31 3.95 4.42 2.00 3.48 10.83 5.26 4.32 0.00 0.00 2.07 0.00 0.00 2.66 2.95 16.11 11.40 8.94 3.16 2.61 7.36 13 I1_AR2 ActiveIntronRegion 0 1.70 7.12 11.78 5.47 4.59 2.85 5.61 12.22 6.72 10.03 0.00 0.90 0.00 0.00 0.00 3.16 2.25 27.85 10.92 15.45 6.70 2.64 6.84 14 I1_SR2 SilentIntronRegion 0 4.03 4.81 9.89 5.29 5.04 4.63 4.52 8.80 8.29 5.45 0.00 1.27 1.65 0.00 0.00 5.54 4.14 16.33 9.00 10.35 6.65 4.16 5.80 15 E2_Aa NovelBoundary 0 7.19 3.03 10.85 0.00 15.45 16.87 0.00 14.83 4.40 4.16 0.00 0.00 7.30 0.00 0.00 4.36 0.00 16.42 4.52 20.26 0.00 0.00 12.80 16 ER2a ExonRegion 0 6.58 6.22 7.89 2.26 5.84 5.70 4.80 8.18 3.72 7.94 0.00 0.00 4.80 0.00 1.27 3.55 2.86 14.71 9.44 11.96 6.56 5.21 2.79 17 E2_Ab KnownBoundary 0 10.59 8.29 15.43 5.26 4.33 11.30 3.97 14.91 6.83 11.20 0.00 0.00 0.00 0.00 0.00 0.00 4.68 29.43 4.14 8.18 3.09 0.00 4.35 18 ER2b ExonRegion 0 7.45 11.98 30.89 9.31 9.86 25.67 8.71 23.59 21.03 26.63 0.00 1.20 4.75 0.00 0.00 8.92 6.96 30.45 24.37 24.89 17.31 9.29 10.33 19 E2_Ac KnownBoundary 0 3.78 9.21 33.17 9.36 12.99 36.63 22.17 10.84 25.46 32.26 0.00 6.30 0.00 0.00 0.00 12.22 7.67 22.68 8.09 27.04 17.73 14.70 11.01 20 E2_Da KnownBoundary 0 3.78 9.67 16.38 4.13 0.00 11.13 0.00 17.83 0.00 9.97 0.00 0.00 0.00 0.00 0.00 0.00 9.54 2.57 9.60 9.78 12.60 0.00 0.00 21 E2a_E2e KnownJunction 0 0.00 3.35 4.23 1.76 0.00 0.00 1.72 0.00 5.64 6.47 0.00 0.00 0.00 0.00 0.00 0.00 4.21 2.32 0.00 0.00 3.15 0.00 0.00 22 E2_Ad KnownBoundary 0 3.70 9.60 31.73 11.62 4.33 25.16 5.74 5.09 8.77 19.05 0.00 6.30 0.00 0.00 0.00 4.02 0.00 22.26 18.73 28.12 27.24 3.12 8.54 23 ER2c ExonRegion 0 4.23 14.87 56.14 18.14 10.54 33.24 12.74 24.95 26.48 47.95 0.00 8.66 0.00 0.00 0.00 10.40 9.90 40.07 18.12 36.04 32.64 12.24 10.65 24 ER2d ExonRegion 0 2.82 11.69 51.87 15.90 8.25 25.67 8.16 20.89 20.38 38.99 0.00 10.82 0.00 0.00 0.00 5.45 6.60 44.96 20.44 34.93 31.22 5.90 12.48 25 ER2e ExonRegion 0 7.53 16.69 55.97 18.88 7.48 27.72 10.86 24.25 21.32 35.22 0.00 9.93 0.00 0.00 0.00 8.74 11.84 47.77 24.08 35.92 25.47 12.38 20.04 26 E2_Db KnownBoundary 0 6.45 15.66 10.73 6.86 8.66 16.30 11.04 5.96 8.94 11.68 0.00 0.00 0.00 0.00 0.00 7.78 17.48 23.01 17.41 18.47 5.62 16.10 0.00 27 E2b_E2e KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.03 0.00 0.00 0.00 0.00 0.00 28 E2_Dc KnownBoundary 0 3.78 3.16 15.14 1.50 4.33 2.84 0.00 0.00 4.75 5.53 0.00 0.00 0.00 0.00 0.00 8.12 0.00 15.42 9.60 3.26 0.00 3.12 0.00 29 E2c_E2e KnownJunction 0 6.59 3.35 81.19 21.48 0.00 28.51 9.89 41.32 22.83 37.74 0.00 0.00 7.30 0.00 0.00 7.78 9.54 36.11 3.58 28.83 19.83 4.90 28.85 30 ER2f ExonRegion 0 10.91 15.49 64.66 19.29 8.44 28.35 10.39 27.52 21.28 31.85 0.00 1.67 0.00 0.00 1.12 14.86 13.20 45.20 18.87 31.26 17.63 12.34 22.82 31 ER2g ExonRegion 0 5.04 3.07 16.19 1.58 5.08 8.11 5.43 10.74 7.31 8.49 0.00 0.00 0.00 0.00 0.76 2.22 0.22 25.24 11.99 9.27 6.16 2.35 6.50 32 E2_Ae KnownBoundary 0 3.63 0.00 26.29 0.00 4.33 0.00 11.08 9.90 7.00 7.47 0.00 0.00 0.00 0.00 0.00 0.00 3.83 19.86 8.00 0.00 0.00 0.00 0.00 33 ER2h ExonRegion 0 5.62 12.81 73.52 27.06 10.91 27.49 10.68 41.60 37.07 53.41 0.00 5.44 5.58 0.00 0.00 17.54 11.41 82.00 44.06 29.13 31.51 9.19 28.78 34 E2_Dd NovelBoundary 0 3.63 0.00 22.80 4.79 4.24 0.00 0.00 8.71 1.42 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.53 0.00 5.24 2.78 0.00 0.00 35 E2d_E3a KnownJunction 0 3.78 9.01 75.63 17.81 3.82 7.55 8.61 45.22 30.27 55.82 0.00 6.30 12.99 0.00 0.00 21.36 4.30 96.30 52.80 27.68 37.07 16.78 25.27 36 ER3a ExonRegion 0 1.97 6.63 64.47 20.99 6.73 11.11 7.83 27.31 28.66 39.85 0.00 10.37 5.50 0.00 0.00 5.83 16.87 58.73 28.45 29.44 25.90 13.34 21.83 37 E3_Da KnownBoundary 0 0.00 0.00 4.70 1.93 4.07 0.00 0.00 2.05 0.00 4.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 4.14 2.68 2.29 0.00 0.00 38 E3a_E4a KnownJunction 0 0.00 5.59 80.42 22.61 4.33 50.99 8.52 29.29 34.75 28.88 0.00 18.76 0.00 0.00 0.00 7.26 4.49 54.47 26.35 18.92 17.67 17.33 11.87 39 ER3b ExonRegion 0 1.69 0.00 2.18 0.57 4.77 0.00 2.11 0.51 0.00 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 1.89 0.40 0.00 0.00 2.48 40 ER4a ExonRegion 0 2.81 12.35 65.94 18.31 5.20 33.00 9.90 29.24 29.38 40.75 0.00 5.96 5.49 0.48 0.00 6.98 13.72 60.08 37.39 22.32 24.73 11.02 12.56 41 E4a_E5a KnownJunction 0 3.04 9.93 62.48 19.38 11.71 27.88 14.13 32.37 58.85 32.74 0.00 18.46 0.00 0.00 0.00 12.22 16.83 87.05 22.21 19.81 26.13 19.78 7.60 42 ER5a ExonRegion 0 5.54 14.88 43.13 11.83 2.41 31.21 6.80 27.02 29.91 32.21 0.00 6.85 10.55 0.00 0.00 3.17 3.47 45.15 22.35 27.20 29.38 17.43 9.05 43 E5_Da KnownBoundary 0 6.00 29.34 39.21 15.15 0.00 7.55 4.02 33.52 11.26 27.80 0.00 18.31 0.00 0.00 0.00 12.22 0.00 38.30 7.53 20.58 14.46 10.72 11.01 44 ER5b ExonRegion 0 2.76 12.24 52.69 17.80 4.66 20.92 5.85 32.05 27.95 27.29 0.00 5.36 2.93 1.94 0.00 6.22 19.72 51.38 25.10 27.95 30.32 14.28 15.82 45 E5_Db NovelBoundary 0 0.00 6.18 30.31 8.92 0.00 10.68 0.00 11.67 10.16 7.98 0.00 0.00 6.82 0.00 0.00 0.00 0.00 23.42 8.56 5.31 16.12 5.63 4.35 46 E5b_E6a KnownJunction 0 3.26 11.58 65.20 32.70 0.00 28.39 1.94 67.61 42.91 36.45 0.00 0.00 6.82 0.00 0.00 15.12 22.53 78.26 21.65 29.08 30.77 35.45 23.65 47 I5 Intron 0 5.82 3.63 27.36 8.93 5.89 8.32 3.28 8.50 9.36 9.64 0.00 0.98 0.00 0.66 0.00 1.63 2.72 24.12 11.38 9.94 9.09 3.72 4.84 48 I5_SR1 SilentIntronRegion 0 8.29 4.43 30.51 11.11 6.14 6.51 2.52 9.83 10.62 9.15 0.00 0.73 0.00 0.74 0.00 0.73 2.72 24.97 11.73 9.86 8.44 4.07 2.53 49 I5_AR1 ActiveIntronRegion 0 0.73 2.02 21.20 4.51 5.44 12.25 4.92 5.82 6.86 10.83 0.00 1.53 0.00 0.49 0.00 3.57 2.77 22.72 10.84 10.28 10.61 3.06 9.80 50 E6_Aa NovelBoundary 0 0.00 2.50 26.26 15.35 8.15 8.01 8.66 14.95 6.71 25.33 0.00 0.00 0.00 0.00 0.00 3.33 0.00 32.96 9.41 26.40 10.93 8.51 8.71 51 ER6a ExonRegion 0 0.44 10.10 67.51 32.80 8.49 23.23 5.34 53.50 33.19 42.58 0.00 0.00 6.92 0.21 0.00 17.27 15.04 74.00 48.08 22.69 30.54 25.33 23.91 52 E6_Da NovelBoundary 0 0.00 0.00 30.84 8.22 7.47 5.56 0.00 15.98 7.61 12.73 0.00 0.00 6.82 0.00 0.00 18.80 0.00 38.84 41.79 9.52 16.25 2.82 12.98 53 E6a_E7a KnownJunction 0 0.00 9.14 81.22 40.02 0.00 28.22 1.90 41.20 39.32 59.42 0.00 0.00 0.00 0.00 0.00 22.05 0.00 95.67 33.60 29.59 33.85 5.39 12.21 54 I6 Intron 0 4.56 2.34 9.97 4.67 2.31 5.01 3.23 5.18 3.70 6.63 0.28 0.51 1.11 0.00 0.29 4.70 2.37 10.29 10.07 7.03 7.28 1.20 7.17 55 I6_AR1 ActiveIntronRegion 0 6.04 2.37 10.19 3.05 4.36 1.73 0.88 3.30 1.72 3.82 0.00 0.00 0.00 0.00 0.00 3.91 0.00 4.86 3.83 5.91 8.37 3.47 7.56 56 I6_SR1 SilentIntronRegion 0 4.67 2.53 10.69 5.39 2.11 6.08 3.96 5.66 4.30 7.75 0.36 0.66 1.42 0.00 0.38 5.26 2.90 12.07 11.94 7.85 7.59 0.86 7.72 57 ER7a ExonRegion 0 7.40 18.88 63.74 30.89 7.61 23.28 9.45 49.10 39.67 47.57 0.00 6.68 8.98 0.33 0.00 10.09 17.09 53.69 34.64 30.87 25.44 20.94 15.27 58 E7a_E8a KnownJunction 0 11.63 23.02 63.69 32.06 23.77 17.83 14.79 49.78 35.76 52.49 0.00 0.00 0.00 0.00 0.00 20.25 13.18 93.02 62.68 16.49 20.88 24.80 12.72 59 ER8a ExonRegion 0 3.27 11.22 47.37 19.63 13.95 24.64 5.44 30.36 34.22 39.89 0.00 12.33 11.94 0.00 0.00 9.43 9.14 64.62 35.88 31.96 15.65 18.44 18.48 60 E8a_E9a KnownJunction 0 3.63 13.42 25.13 15.08 8.66 19.76 4.42 20.54 30.96 25.30 0.00 20.11 6.82 0.00 0.00 11.11 4.58 59.07 26.64 31.83 16.62 19.78 19.72 61 I8 Intron 0 7.61 6.29 24.30 12.27 7.89 13.85 5.62 13.90 12.97 11.93 0.00 2.93 1.11 0.10 0.00 3.85 2.61 8.99 14.21 11.48 4.12 3.00 4.01 62 I8_AR1 ActiveIntronRegion 0 9.67 7.87 33.08 16.71 12.89 14.37 7.53 21.12 18.91 17.65 0.00 4.82 1.11 0.00 0.00 4.55 3.31 11.42 18.61 12.30 3.66 4.20 5.05 63 I8_SR2 SilentIntronRegion 0 9.41 7.03 31.35 16.35 5.37 16.35 5.12 14.40 15.23 12.33 0.00 2.24 2.43 0.00 0.00 4.97 4.16 11.65 19.27 19.19 6.52 3.24 3.70 64 E9_Aa NovelBoundary 0 0.00 6.38 48.08 10.35 7.22 26.52 3.71 26.21 7.96 12.87 0.00 0.00 0.00 2.24 0.00 7.86 0.00 13.27 4.52 9.40 11.37 0.00 7.43 65 ER9a ExonRegion 0 5.11 11.76 38.86 16.49 5.04 17.93 5.75 21.93 25.44 28.79 0.00 3.56 4.17 0.14 0.11 8.27 9.64 36.79 27.60 18.62 21.10 11.30 8.91 66 E9_Da KnownBoundary 0 9.48 38.02 64.19 18.08 12.73 19.08 12.28 24.60 10.56 36.96 0.00 12.30 6.33 0.00 0.00 3.33 13.18 45.18 28.05 20.84 30.64 19.53 23.13 67 E9a_E9b KnownJunction 0 0.00 8.42 1.09 5.76 0.00 7.15 0.00 18.28 27.00 11.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.78 0.00 0.00 0.00 0.00 0.00 68 ER9b ExonRegion 0 21.88 64.20 136.07 75.53 32.13 29.85 27.42 43.10 19.14 44.50 0.05 11.52 8.68 0.45 3.90 23.96 20.42 84.41 61.96 50.62 42.41 43.07 28.12 69 E9_Ab KnownBoundary 0 43.12 92.94 141.18 64.63 62.56 29.02 25.17 33.31 12.15 43.06 2.16 38.11 6.49 0.00 10.01 27.77 3.83 59.11 76.33 16.17 31.75 22.53 27.23 70 ER9c ExonRegion 0 21.43 56.60 100.71 59.21 29.54 49.64 24.42 57.45 53.77 58.51 0.44 12.95 8.30 0.38 2.50 11.93 15.29 87.52 41.27 37.93 34.45 26.09 24.30 71 E9_Db KnownBoundary 0 57.12 94.06 187.43 76.28 28.52 124.64 54.50 51.10 74.33 85.80 0.00 0.00 6.49 0.00 0.00 15.38 21.97 81.75 114.92 66.35 34.72 34.17 36.96 72 ER9d ExonRegion 0 35.19 60.91 106.30 62.22 34.61 42.23 25.38 63.22 51.58 48.50 2.01 11.50 15.24 5.04 11.78 14.37 20.60 61.51 49.52 43.40 29.43 26.26 29.57 73 IG11_SR1 SilentIntergenicRegion 0 1.35 4.54 11.64 3.24 4.26 4.68 2.53 5.75 2.35 7.08 2.46 3.87 0.00 0.00 1.58 0.00 1.05 2.06 7.09 12.89 6.32 1.99 12.17