Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ELK1 Gene 0 30.29 63.80 148.19 49.55 44.83 49.46 30.19 44.29 36.94 73.50 151.93 68.68 62.33 161.34 100.77 101.78 143.57 83.28 98.06 54.76 122.06 155.74 142.21 2 468956 Transcript 0 3.93 0.54 4.17 0.54 1.56 0.29 2.38 1.23 0.39 1.20 1.33 1.97 2.05 1.68 2.73 2.21 3.32 0.82 2.03 1.47 1.40 2.73 2.96 3 343894 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 376985 Transcript 0 1.83 0.02 0.90 0.00 0.00 2.13 1.13 0.89 0.33 0.00 0.00 0.00 1.60 0.46 0.00 0.00 1.05 0.98 0.00 0.00 0.55 2.92 5.81 5 480157 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 376983 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 247161 Transcript 0 0.00 0.00 4.90 0.00 0.00 0.00 0.00 0.00 1.24 1.15 1.93 0.00 0.00 3.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 8 ER1a ExonRegion 0 0.00 2.91 3.94 0.00 1.91 5.50 2.93 0.00 1.24 0.74 3.45 0.00 0.00 3.48 4.35 2.76 10.14 1.58 4.78 0.61 5.19 6.85 10.91 9 ER1b ExonRegion 1 13.44 24.64 16.26 4.41 21.54 36.57 15.45 3.19 9.99 12.05 50.54 1.47 0.59 58.33 42.84 50.76 74.09 12.79 40.61 28.07 50.73 57.69 124.51 10 E1_Ac KnownBoundary 0 3.04 48.48 39.44 16.15 28.86 54.91 29.54 18.65 21.18 27.21 43.48 5.85 6.17 42.73 23.36 63.74 68.16 4.15 53.08 53.43 45.28 64.17 136.84 11 ER1c ExonRegion 0 4.10 20.18 26.47 10.27 14.04 17.69 6.03 7.95 9.84 19.46 28.01 2.20 8.15 25.94 28.30 22.18 41.90 9.41 29.16 28.31 34.82 31.25 46.53 12 E1a_E2a KnownJunction 0 3.78 14.67 13.45 1.40 3.90 14.59 0.00 1.73 1.24 13.81 25.43 5.85 12.01 2.47 13.72 3.33 36.84 6.51 12.33 5.31 35.40 20.33 11.18 13 E1a_E4a KnownJunction 0 8.82 9.41 44.65 17.11 3.06 13.97 6.05 8.54 10.36 25.60 34.17 0.00 0.00 41.91 41.41 29.05 69.28 19.61 38.97 36.94 53.38 35.64 37.82 14 ER2a ExonRegion 1 6.53 5.58 18.54 7.84 4.49 5.24 1.64 12.46 11.14 21.86 83.26 26.83 6.37 52.81 34.35 37.71 48.67 22.36 56.04 17.26 56.53 49.24 67.46 15 E2a_E3a KnownJunction 0 0.00 0.00 3.02 0.00 0.00 0.00 1.99 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.62 0.00 0.00 0.00 3.12 0.00 16 E2a_E4a KnownJunction 0 0.00 0.00 25.22 18.51 8.15 2.50 2.03 16.84 15.25 34.60 59.96 25.06 12.66 92.65 62.55 54.60 43.48 42.74 100.24 32.15 55.35 82.73 158.52 17 ER3a ExonRegion 0 7.85 1.08 5.32 1.08 3.12 0.58 2.77 2.46 0.78 0.72 2.66 3.94 4.10 3.36 5.46 4.41 6.65 0.03 4.05 2.93 2.79 2.33 5.92 18 E3_Da NovelBoundary 0 19.78 5.66 1.18 4.89 0.00 0.00 6.32 6.53 1.79 1.26 5.00 0.00 20.45 2.41 15.70 11.79 4.02 2.57 16.57 8.69 3.09 8.94 19.72 19 ER4a ExonRegion 0 5.72 18.67 130.60 38.40 30.28 35.63 15.53 49.11 45.69 91.67 188.25 71.67 68.01 165.17 127.17 97.11 168.52 80.38 94.88 83.93 179.30 137.85 144.24 20 E4_Da KnownBoundary 0 14.22 0.00 2.96 1.73 0.00 0.00 1.85 5.09 1.79 0.00 0.00 0.00 0.00 4.94 0.00 0.00 3.74 5.06 0.00 0.00 3.15 11.70 23.65 21 E4a_E5a KnownJunction 0 3.78 39.53 214.57 60.00 45.33 75.64 52.82 77.30 52.00 103.88 244.85 87.18 106.49 273.06 119.17 138.00 248.62 149.61 76.71 113.39 263.54 151.25 173.37 22 ER4b ExonRegion 0 3.66 0.03 1.80 0.00 0.00 4.25 2.27 1.78 0.65 0.00 0.00 0.00 3.20 0.91 0.00 0.00 2.10 1.96 0.00 0.00 1.10 5.84 11.61 23 E4_Db NovelBoundary 0 13.78 0.00 3.93 0.00 4.33 5.79 0.00 2.46 1.74 4.84 0.00 5.40 0.00 0.00 0.00 4.36 0.00 0.00 0.00 2.94 2.41 11.14 3.93 24 E4b_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 ER5a ExonRegion 0 23.14 65.96 192.85 58.97 25.78 67.09 31.82 62.40 61.28 111.36 283.07 112.21 80.12 275.29 149.61 168.97 256.97 215.42 186.72 100.74 252.73 205.40 236.20 26 E5_Da KnownBoundary 0 56.60 88.01 222.61 84.90 43.89 76.66 17.53 70.77 83.85 131.30 334.30 139.85 126.13 317.56 223.25 266.68 304.07 269.49 246.31 137.10 261.75 294.23 315.59 27 E5a_E7b KnownJunction 0 5.70 22.76 50.56 5.19 3.31 23.51 8.61 17.58 16.84 36.08 110.55 27.91 25.97 60.69 13.72 29.05 93.22 45.14 29.55 29.15 79.82 58.66 72.13 28 ER5b ExonRegion 0 12.72 46.36 171.25 46.08 24.60 54.61 21.11 57.46 50.74 96.93 197.00 79.00 72.51 232.85 145.19 128.45 215.54 141.70 126.22 88.82 196.22 192.06 174.40 29 E5b_E6a KnownJunction 0 27.49 93.47 192.28 43.65 29.97 66.04 26.23 79.60 53.36 91.14 179.94 80.13 107.30 244.04 197.17 137.91 223.66 137.58 113.98 59.00 157.47 210.03 212.30 30 ER6a ExonRegion 0 18.61 51.93 141.26 30.87 22.22 52.42 25.75 57.46 36.06 91.69 178.39 51.98 75.72 217.36 111.73 120.39 185.53 131.28 94.43 55.34 174.23 173.08 181.70 31 E6a_E7a KnownJunction 0 16.97 61.17 211.76 42.35 22.58 58.21 53.39 96.15 41.90 147.02 247.80 92.58 111.68 396.08 210.77 254.89 182.14 249.26 212.24 78.75 200.28 330.78 430.66 32 I6_AR1 ActiveIntronRegion 0 9.45 2.70 12.02 7.34 7.30 5.10 3.35 4.60 7.28 5.91 15.50 3.28 3.84 5.49 11.45 14.04 11.58 17.66 18.94 6.42 8.93 16.91 20.93 33 E7_Aa NovelBoundary 0 29.63 3.35 24.63 12.29 4.24 0.00 0.00 9.32 8.74 14.59 17.27 0.00 0.00 9.83 15.20 4.19 0.00 17.45 27.20 8.88 12.11 36.68 20.40 34 ER7a ExonRegion 0 14.11 61.59 217.36 45.91 25.87 70.00 34.21 98.99 65.48 148.30 364.61 75.11 110.25 327.14 199.22 198.99 283.98 243.96 179.44 93.04 240.45 263.48 332.49 35 E7_Ab KnownBoundary 0 23.19 80.58 253.51 42.75 50.00 86.88 40.23 127.95 75.90 149.86 421.05 105.78 157.29 310.03 194.08 172.35 373.91 215.52 124.33 108.79 275.03 210.03 296.64 36 ER7b ExonRegion 0 27.14 58.14 234.55 38.40 28.49 74.86 27.41 93.34 66.04 122.99 375.66 82.51 124.42 279.83 157.86 130.25 304.07 187.17 102.12 96.87 240.59 169.13 250.13 37 E7b_E8a KnownJunction 0 61.27 72.03 270.51 42.35 26.40 74.22 16.96 72.13 55.09 106.99 252.17 69.62 132.78 264.11 114.96 97.92 221.32 126.76 99.67 81.81 182.92 116.77 138.46 38 ER7c ExonRegion 0 40.60 60.45 231.37 32.15 19.22 59.18 17.87 77.62 49.40 116.83 299.34 74.39 121.73 244.28 96.14 98.22 223.41 153.62 87.60 77.37 193.02 128.99 162.45 39 ER8a ExonRegion 0 43.45 74.29 254.42 53.22 34.40 70.99 41.24 78.92 63.21 140.52 228.96 136.91 141.34 253.72 166.19 143.27 211.17 131.76 135.77 81.80 196.81 228.83 206.79 40 E8_Da KnownBoundary 0 29.78 45.12 332.34 90.46 45.93 97.44 65.67 87.73 91.29 146.67 207.89 92.28 117.85 210.08 159.22 93.91 234.31 89.79 132.05 57.33 182.18 202.44 150.50 41 ER8b ExonRegion 0 78.83 147.22 309.44 134.24 123.81 108.48 73.81 73.30 65.93 114.74 263.80 158.43 135.54 272.64 143.41 193.29 239.82 130.12 200.58 78.83 171.17 300.60 245.27 42 E8_Db KnownBoundary 0 234.63 423.87 435.97 209.93 181.66 119.25 116.10 80.67 68.89 143.52 293.60 133.24 89.93 221.03 195.81 179.35 204.58 118.02 302.03 101.63 136.65 399.67 345.29 43 ER8c ExonRegion 0 38.40 89.23 128.98 43.86 55.65 36.82 31.95 33.15 28.82 60.78 94.37 46.56 23.18 104.99 98.17 71.97 80.23 29.76 65.12 42.82 64.45 135.72 93.16 44 ER8d ExonRegion 0 0.00 0.00 4.90 0.00 0.00 0.00 0.00 0.00 1.24 1.15 1.93 0.00 0.00 3.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 45 IG47 Intergenic 0 4.67 9.93 19.79 7.36 11.24 5.27 6.81 8.52 10.60 5.18 2.71 5.49 4.02 3.71 3.59 2.29 6.41 8.69 8.87 8.64 5.01 6.64 7.04 46 IG47_SR2 SilentIntergenicRegion 0 4.13 9.97 21.13 6.75 8.96 3.61 6.15 8.36 11.82 5.21 2.68 6.52 4.69 4.78 4.30 3.89 8.65 11.16 7.77 11.04 7.54 6.58 8.57 47 IG47_AR1 ActiveIntergenicRegion 0 4.87 9.80 26.40 8.52 14.55 6.30 9.21 10.59 13.76 6.90 3.18 8.13 3.81 4.55 4.97 1.03 7.25 11.90 13.35 11.31 5.81 7.82 8.88 48 IG47_SR1 SilentIntergenicRegion 0 5.01 10.02 13.05 6.96 10.60 5.94 5.44 6.97 6.84 3.71 2.33 2.35 3.58 2.03 1.77 1.87 3.67 3.73 6.15 4.21 2.02 5.74 4.11