Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SUV39H1 Gene 0 28.32 21.51 55.72 26.78 20.33 10.92 26.32 36.72 17.18 49.38 93.10 28.00 20.13 116.39 93.08 100.69 85.22 70.69 26.13 39.58 17.37 11.38 10.01 2 448548 Transcript 0 0.00 0.96 0.07 0.00 0.00 0.00 0.00 0.94 0.12 0.13 0.07 0.00 0.00 1.52 0.00 0.11 0.00 0.00 0.12 0.00 0.00 0.04 0.00 3 376687 Transcript 1 28.98 19.31 24.70 16.58 51.81 30.63 42.64 13.77 8.17 27.63 130.59 3.90 17.26 95.31 47.82 177.60 116.99 72.75 38.80 31.75 27.41 15.71 12.91 4 337852 Transcript 0 3.43 0.79 16.09 7.92 0.00 0.00 3.62 8.90 5.40 16.02 9.33 1.80 0.00 2.02 2.94 10.04 13.14 28.75 6.47 7.43 2.22 3.00 2.95 5 422496 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 6 453214 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 482260 Transcript 0 0.59 0.03 1.48 1.08 0.73 0.50 1.09 0.00 0.00 0.48 1.06 0.00 0.00 1.12 1.70 2.44 0.00 0.00 0.00 0.01 0.00 0.00 0.81 8 462786 Transcript 0 0.44 3.32 4.46 2.66 0.58 1.77 5.14 7.07 7.91 5.43 3.95 0.55 2.96 12.04 10.34 7.21 9.52 7.82 3.44 3.55 0.76 2.25 1.38 9 IG45_AR1 ActiveIntergenicRegion 0 0.00 0.78 13.79 2.96 0.76 7.04 0.76 2.71 6.74 7.66 0.00 2.06 0.00 0.26 0.00 0.00 0.00 5.82 3.07 5.08 2.50 0.00 2.26 10 ER1a ExonRegion 0 0.00 1.92 0.14 0.00 0.00 0.00 0.00 0.00 0.24 0.26 0.15 0.00 0.00 0.81 0.00 0.23 0.00 0.00 0.25 0.00 0.00 0.08 0.00 11 E1_Da NovelBoundary 0 0.00 3.35 22.80 0.00 0.00 2.44 0.00 2.09 2.89 8.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.68 8.75 5.75 0.00 0.00 0.00 12 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 2.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 ER2a ExonRegion 1 5.23 5.17 10.10 5.41 11.04 9.72 15.78 5.29 3.42 10.71 45.78 1.08 2.76 39.36 22.70 50.27 46.70 24.82 10.32 11.91 10.06 3.78 6.73 14 E2a_E3a KnownJunction 1 81.72 52.75 62.77 42.29 144.40 82.17 112.13 36.02 21.09 69.89 345.98 6.30 49.02 241.69 120.77 482.52 304.25 193.42 106.07 83.35 72.16 43.35 32.01 15 ER3a ExonRegion 1 25.40 17.29 57.04 37.35 49.06 34.97 37.61 30.54 24.64 52.57 156.01 10.10 27.81 96.79 37.03 223.19 135.10 155.04 56.73 36.93 24.87 21.23 15.59 16 E3_Ab KnownBoundary 1 0.00 3.22 51.74 43.98 8.66 5.11 1.85 34.09 29.08 41.21 31.17 6.00 26.30 14.77 14.46 58.79 13.28 98.70 16.00 25.25 0.00 2.39 3.76 17 ER3b ExonRegion 1 1.35 3.41 34.30 15.42 4.21 3.55 2.66 20.29 14.20 42.39 81.16 7.41 11.49 26.53 12.84 16.27 78.64 34.09 9.95 27.66 14.96 0.23 4.18 18 E3_Da NovelBoundary 1 0.00 0.00 41.45 11.69 8.49 2.78 1.81 30.15 16.41 66.91 201.26 28.51 13.64 32.84 4.45 17.17 207.39 17.62 4.61 27.29 50.04 0.00 7.34 19 E3b_E4a KnownJunction 1 3.78 5.79 53.04 18.35 3.57 2.73 20.54 44.32 30.90 71.83 255.28 52.22 35.06 154.51 75.53 74.25 257.04 81.08 39.91 72.93 40.40 5.51 14.85 20 ER3c ExonRegion 1 0.00 0.00 43.30 9.99 2.68 1.83 3.97 30.54 17.70 66.14 248.06 30.31 14.07 61.18 14.51 26.75 236.56 33.26 14.87 44.68 52.89 2.08 0.00 21 ER3d ExonRegion 1 0.20 2.52 44.05 16.22 4.08 1.83 10.65 32.84 24.76 67.39 266.37 37.93 25.68 97.52 41.17 51.80 255.74 61.50 28.06 53.80 50.90 4.27 10.91 22 E4_Ab NovelBoundary 1 6.89 5.85 39.06 28.87 12.90 0.00 6.23 19.06 17.53 34.52 51.33 0.00 0.00 117.37 54.14 184.91 43.57 110.51 39.53 30.68 2.97 41.64 20.91 23 ER4a ExonRegion 0 3.62 6.78 47.38 22.66 10.59 0.23 15.78 36.08 26.92 62.27 199.73 35.90 22.67 190.90 94.53 159.01 186.78 111.10 55.48 64.01 27.64 32.99 36.10 24 ER4b ExonRegion 1 3.94 6.03 41.24 30.83 9.13 0.00 7.76 21.04 21.34 34.96 72.98 13.88 5.82 167.28 107.25 259.09 67.27 136.80 54.26 38.08 5.70 32.62 32.10 25 ER4c ExonRegion 0 0.94 7.99 16.15 7.68 14.91 13.53 26.79 7.99 5.75 17.75 18.41 4.50 5.32 21.77 15.75 50.03 24.40 45.67 7.60 11.76 0.72 1.66 5.01 26 E4_Db KnownBoundary 1 6.74 20.72 15.73 1.33 0.00 14.20 15.46 6.20 5.50 16.09 11.37 42.76 0.00 20.84 42.65 16.24 7.67 31.05 0.00 7.93 0.00 2.76 12.04 27 E4b_E4f KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 ER4d ExonRegion 1 7.16 14.67 1.55 0.00 4.46 3.19 3.97 1.73 0.00 3.80 0.05 17.63 9.16 7.42 11.54 14.72 0.00 12.36 0.00 1.27 0.00 0.69 5.45 29 E4_Dc KnownBoundary 0 10.00 12.56 0.00 1.50 3.40 5.45 0.00 0.00 0.00 4.35 2.16 0.00 0.00 2.71 0.00 11.02 4.68 3.86 0.00 0.00 2.59 0.00 0.00 30 E4c_E4c KnownJunction 0 0.00 0.00 0.00 1.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.71 0.00 0.00 0.00 0.00 0.00 31 E4_Ac KnownBoundary 0 6.59 2.96 0.00 0.00 8.23 0.00 1.85 0.00 0.00 1.42 2.68 0.00 0.00 2.41 0.00 0.00 0.00 2.32 0.00 0.00 0.00 0.00 4.18 32 ER4e ExonRegion 0 15.24 10.17 0.00 0.00 8.03 1.83 2.65 1.73 0.00 4.13 0.00 4.33 0.94 1.62 1.74 5.94 0.00 11.09 0.00 0.00 0.00 0.00 2.94 33 ER4f ExonRegion 0 18.99 8.53 0.00 0.00 5.05 7.44 5.08 0.58 0.00 1.27 0.00 0.00 0.00 1.17 0.00 0.50 0.00 5.70 0.00 0.00 0.00 0.00 2.61 34 E4_Ad KnownBoundary 0 26.89 6.38 4.32 0.00 3.23 17.72 8.04 4.19 0.00 2.90 9.84 0.00 0.00 2.65 0.00 4.19 4.77 2.11 4.33 0.00 0.00 0.00 4.10 35 ER4g ExonRegion 0 13.70 13.77 1.70 0.42 0.51 6.10 11.97 0.98 0.12 0.76 0.00 0.00 0.00 2.72 2.59 3.24 0.00 4.25 0.39 2.05 0.00 0.30 1.46 36 E4_Dd KnownBoundary 0 3.19 6.38 3.05 1.73 0.00 4.94 3.58 2.22 0.00 1.56 0.00 0.00 0.00 4.71 4.45 7.35 0.00 4.19 0.00 5.43 0.00 0.00 0.00 37 E4d_E4e KnownJunction 0 0.00 0.00 1.60 2.06 0.00 0.00 0.00 4.60 0.00 4.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.05 0.00 0.00 0.00 0.00 0.00 38 E4_Ae KnownBoundary 0 0.00 3.35 4.44 0.00 0.00 0.00 12.94 6.70 1.39 4.54 0.00 5.70 0.00 9.59 14.96 0.00 0.00 6.30 4.80 6.52 0.00 3.12 4.18 39 ER4h ExonRegion 1 5.93 9.76 7.60 1.64 2.68 3.67 10.59 6.22 1.24 4.59 0.00 0.00 0.94 32.48 20.31 20.80 0.00 17.00 3.19 8.94 0.00 5.42 2.94 40 ER4i ExonRegion 0 6.27 8.61 20.52 6.47 4.83 1.04 11.29 14.51 4.65 10.84 14.02 3.23 3.77 70.12 35.84 33.45 11.33 35.72 1.87 27.41 6.01 9.56 5.07 41 E4_Af KnownBoundary 1 17.56 14.80 42.61 20.48 19.61 2.44 8.08 24.19 11.92 20.20 42.91 18.16 0.00 102.77 33.01 63.40 47.59 72.58 0.00 39.25 11.55 11.21 11.01 42 ER4j ExonRegion 0 8.54 13.21 51.51 19.17 10.22 6.48 16.00 35.42 12.24 52.64 77.94 11.09 9.19 118.79 74.84 76.86 65.67 53.14 20.04 37.90 18.73 11.68 9.24 43 E4_De NovelBoundary 0 3.26 19.21 13.63 8.89 25.38 9.20 20.01 8.71 7.81 27.43 58.44 17.41 20.29 84.47 40.42 56.82 56.76 21.18 16.19 20.90 10.56 7.72 7.34 44 E4e_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45 E4f_E10a KnownJunction 0 27.86 26.31 96.33 38.49 6.28 5.39 34.49 36.39 27.60 72.15 118.08 48.17 45.29 257.46 137.71 145.69 111.27 133.19 21.55 68.58 39.17 7.41 7.85 46 ER4k ExonRegion 0 19.21 25.97 83.89 30.72 15.44 8.04 30.96 41.88 24.70 73.58 126.23 43.63 33.91 222.13 117.61 137.40 107.66 104.61 21.56 59.57 31.70 8.65 12.20 47 ER5a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.11 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.12 0.00 48 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 E6a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50 ER6a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51 ER7a ExonRegion 0 1.18 0.07 2.95 2.17 1.47 1.01 2.18 0.00 0.00 0.96 2.12 0.00 0.00 2.24 3.40 4.89 0.00 0.00 0.00 0.02 0.00 0.00 1.61 52 E7a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 ER8a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55 ER9a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56 E10_Da NovelBoundary 0 33.78 15.46 49.14 18.41 0.00 0.00 13.38 17.70 9.43 29.58 35.80 6.15 6.66 23.54 4.82 83.65 71.53 50.86 20.71 38.41 8.15 2.63 11.78 57 E10a_E10b KnownJunction 0 13.71 3.16 12.12 15.28 0.00 0.00 14.49 10.02 11.60 32.93 37.33 7.20 0.00 8.06 11.74 40.16 52.55 44.36 25.88 29.72 8.90 12.00 11.78 58 ER10a ExonRegion 0 28.47 24.21 70.79 29.90 3.71 2.31 26.01 25.70 21.04 65.56 103.44 37.71 25.11 183.47 94.99 133.55 119.36 100.08 30.21 61.91 29.22 11.29 14.87 59 E10_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 60 E10_Ac KnownBoundary 1 9.78 20.19 9.85 8.62 0.00 0.00 10.11 11.21 11.95 26.35 58.38 0.00 6.33 44.26 38.45 61.86 46.94 30.76 18.92 10.99 20.45 2.82 4.10 61 ER10b ExonRegion 0 23.99 28.47 67.40 29.07 2.68 0.00 21.62 29.96 18.53 62.32 108.24 33.19 25.01 138.05 98.64 134.74 106.73 89.31 35.04 49.65 30.85 14.58 14.68 62 ER10c ExonRegion 0 25.40 29.69 67.64 28.89 2.68 0.00 20.12 33.53 17.79 67.21 96.64 32.90 28.14 145.20 97.48 130.18 120.15 87.58 35.04 42.98 28.65 14.58 14.68 63 ER10d ExonRegion 0 21.81 29.54 56.53 30.20 17.89 13.40 20.85 61.78 27.25 96.57 153.99 38.52 25.45 198.41 132.81 130.83 145.06 123.41 46.04 52.17 29.79 14.64 11.26 64 E10_Db KnownBoundary 0 0.00 5.53 6.18 3.70 0.00 0.00 3.62 3.57 8.88 0.00 4.90 0.00 0.00 13.95 19.41 8.63 3.65 8.42 9.41 5.62 2.90 0.00 3.84 65 E10b_E10d KnownJunction 0 28.75 32.17 47.60 36.79 39.47 11.07 22.61 62.68 31.31 81.39 156.41 41.41 19.97 223.91 225.23 142.95 148.76 111.80 83.58 61.62 30.21 12.80 11.87 66 ER10e ExonRegion 0 0.44 3.32 4.46 2.66 0.58 1.77 5.14 7.07 7.91 5.43 3.95 0.55 2.96 12.04 10.34 7.21 9.52 7.82 3.44 3.55 0.76 2.25 1.38 67 E10_Ad KnownBoundary 0 0.00 0.00 4.41 5.99 0.00 2.90 17.00 5.50 7.58 8.92 4.95 0.00 0.00 10.18 13.85 8.46 9.54 7.30 3.76 9.46 0.00 5.76 0.00 68 ER10f ExonRegion 0 22.60 18.96 62.51 34.37 30.16 23.50 40.95 48.81 31.95 69.38 151.42 30.53 33.31 177.85 142.51 117.17 139.09 117.47 48.91 56.98 25.21 18.01 14.09 69 E10_Dc KnownBoundary 0 18.00 13.75 46.21 19.88 14.35 12.15 24.02 22.59 13.69 32.69 68.02 5.55 8.12 26.84 26.33 61.10 59.09 75.11 30.40 26.72 11.00 14.51 12.72 70 E10c_E10e KnownJunction 0 0.00 0.00 50.65 12.59 0.00 0.00 0.00 20.99 10.01 26.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55.88 0.00 0.00 0.00 0.00 0.00 71 E10_Ae KnownBoundary 0 15.78 11.77 34.50 9.79 4.07 13.63 14.09 23.25 8.62 24.98 49.85 31.06 13.15 54.74 38.94 74.08 53.67 50.95 4.05 17.00 5.87 11.08 3.59 72 ER10g ExonRegion 0 21.17 21.56 68.62 29.44 26.22 20.54 30.45 49.09 25.94 67.44 141.87 58.01 45.96 182.88 117.79 153.36 133.36 128.23 38.22 46.38 19.83 20.84 13.51 73 ER10h ExonRegion 0 19.34 22.49 68.56 36.29 29.43 8.86 27.42 64.22 25.01 75.75 154.54 66.94 54.55 242.17 185.81 226.38 138.79 156.26 43.81 58.79 20.82 24.26 12.24 74 E10_Dd NovelBoundary 0 14.97 2.96 8.96 0.00 11.29 0.00 6.23 1.68 1.62 6.61 10.16 0.00 0.00 14.13 4.45 8.72 12.25 8.83 4.80 8.18 2.53 11.88 3.76 75 E10d_E11a KnownJunction 0 10.22 18.15 81.25 49.24 37.78 8.12 42.40 81.08 29.05 101.73 162.41 68.27 99.51 281.12 194.94 227.46 125.76 185.88 70.59 92.17 29.90 31.66 7.26 76 Ix Intron 0 3.44 2.59 5.17 2.15 2.84 1.82 4.12 4.01 1.56 6.53 13.54 8.16 8.00 25.14 14.24 17.03 15.88 9.81 5.63 5.72 2.96 2.95 1.45 77 Ix_SR1 SilentIntronRegion 0 4.04 2.89 5.50 2.39 3.10 2.34 4.88 4.60 2.03 8.38 15.12 9.78 6.81 26.99 14.37 21.22 16.39 11.47 7.48 5.85 3.15 3.30 1.81 78 E11_Aa NovelBoundary 0 6.67 2.76 7.72 1.86 0.00 11.24 0.00 6.16 1.56 5.83 7.21 0.00 13.15 23.31 13.85 3.85 30.48 8.91 3.95 2.75 0.00 0.00 0.00 79 ER11a ExonRegion 0 12.53 19.20 86.09 37.45 22.89 11.42 40.95 63.66 28.53 77.50 186.74 68.57 59.14 230.81 136.87 162.77 152.99 146.77 44.93 69.85 26.21 19.83 11.14 80 E11_Da KnownBoundary 1 27.19 25.98 117.06 44.92 27.42 11.02 52.33 86.46 32.70 101.97 102.76 77.13 26.30 248.75 209.28 256.86 93.88 199.43 35.30 52.60 17.17 23.39 16.65 81 ER11b ExonRegion 0 19.86 31.62 82.69 35.14 27.01 14.68 33.73 46.00 24.95 71.66 179.38 73.04 56.72 237.79 175.32 215.72 155.69 104.48 48.70 67.25 24.80 24.10 19.07 82 E11_Ab KnownBoundary 1 3.11 8.75 83.08 24.47 27.16 10.85 24.82 40.83 13.60 57.48 42.70 101.73 50.81 149.69 109.03 69.81 85.65 36.52 3.95 47.30 19.95 18.61 0.00 83 ER11c ExonRegion 0 27.14 34.73 72.54 35.48 27.82 11.94 54.62 41.27 20.08 67.45 134.63 69.67 34.21 194.66 112.52 159.37 130.78 97.53 32.89 43.38 28.78 12.94 9.49 84 E11_Db KnownBoundary 0 21.26 42.62 62.56 24.01 43.46 5.74 55.42 31.26 8.91 39.43 81.28 90.03 26.13 113.66 82.45 85.19 83.12 68.27 12.89 30.42 24.59 3.12 11.87 85 E11_Dc KnownBoundary 1 50.38 39.07 38.11 24.31 33.19 5.79 47.17 40.58 12.01 50.98 86.86 44.71 0.00 73.17 90.98 146.37 118.28 69.14 22.68 35.09 21.50 21.62 8.71 86 ER11d ExonRegion 0 58.29 57.41 86.91 44.14 41.78 15.80 72.00 66.61 19.10 82.22 150.32 99.58 49.06 191.90 156.67 221.99 186.63 113.85 42.88 55.48 47.46 27.41 28.01 87 E11_Dd KnownBoundary 0 59.57 36.11 44.44 25.97 29.88 13.91 68.89 36.19 15.02 44.27 135.19 87.18 35.06 177.94 170.47 151.16 142.50 47.26 35.11 47.75 49.17 17.88 41.15 88 ER11e ExonRegion 0 58.88 46.77 86.17 44.85 38.07 14.00 70.47 64.97 22.46 81.53 154.63 91.71 37.31 185.81 187.26 215.61 200.45 109.27 40.11 58.61 55.69 30.21 34.04 89 ER11f ExonRegion 0 59.06 34.22 88.48 43.41 32.51 15.05 35.61 56.47 24.61 68.29 114.05 33.62 22.37 143.04 141.77 123.23 102.44 84.84 34.10 56.01 22.24 14.28 12.39 90 ER11g ExonRegion 0 0.00 0.00 1.23 2.04 0.00 0.00 0.00 0.00 0.00 2.29 0.00 4.33 0.00 4.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00