Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TBC1D25 Gene 0 35.30 43.89 93.66 55.14 32.61 44.25 25.09 52.44 46.72 56.58 73.58 23.27 29.03 47.05 52.52 57.29 43.18 74.92 41.01 50.26 48.10 37.07 36.14 2 376771 Transcript 0 17.77 27.57 31.95 21.28 18.10 15.37 12.11 20.07 17.02 17.26 18.91 7.55 7.10 11.69 16.12 13.75 9.30 15.57 10.99 15.12 11.97 10.49 11.39 3 481090 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 427713 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 494495 Transcript 0 0.00 0.00 5.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.11 0.00 0.00 2.47 4.70 0.00 0.00 0.00 0.00 0.00 7.72 2.39 0.00 6 476141 Transcript 0 3.57 4.70 14.02 7.84 6.69 6.56 2.33 8.54 5.62 8.06 2.58 1.45 2.45 6.47 3.20 6.28 9.43 10.38 2.92 6.78 2.80 3.42 4.38 7 418627 Transcript 0 1.79 0.46 1.81 2.38 0.08 0.67 1.62 3.40 1.13 1.78 2.39 0.18 3.06 2.01 1.48 2.06 0.84 2.87 0.42 1.61 1.53 0.34 2.70 8 ER1a ExonRegion 0 1.52 0.97 1.46 0.64 1.12 2.58 0.74 0.42 1.24 0.36 2.97 0.00 0.00 2.31 1.27 2.68 0.72 3.27 2.13 0.98 2.38 0.53 1.70 9 E1_Ab KnownBoundary 0 25.12 25.32 5.00 3.50 24.62 27.82 8.66 4.89 3.50 0.00 23.58 0.00 0.00 23.54 9.52 33.58 13.28 14.88 22.49 5.88 15.44 13.96 31.84 10 E1_Ac KnownBoundary 0 11.04 3.35 7.24 2.06 8.32 19.65 8.79 5.09 5.21 6.50 10.27 0.00 0.00 14.36 5.07 28.45 8.79 40.04 13.93 18.28 8.71 6.25 21.26 11 ER1b ExonRegion 1 19.31 23.39 12.56 7.61 22.74 37.97 13.52 8.35 8.90 12.42 32.78 4.69 13.68 38.03 9.31 41.36 24.48 56.20 27.34 20.92 21.30 14.41 33.89 12 E1_Ad KnownBoundary 0 0.00 0.00 0.00 1.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E1_Ae KnownBoundary 0 6.67 3.16 1.66 5.73 4.07 30.61 5.92 0.00 0.00 0.00 24.64 0.00 0.00 0.00 0.00 0.00 16.64 15.05 33.70 5.69 20.51 11.51 7.68 14 ER1c ExonRegion 0 30.34 26.44 20.15 10.45 38.35 72.33 32.66 20.55 22.92 30.84 59.49 8.66 28.14 35.19 23.85 68.03 53.55 99.57 44.60 37.59 33.30 23.61 47.31 15 E1_Af KnownBoundary 0 16.82 15.92 17.71 9.39 11.63 44.92 28.71 31.42 31.39 41.77 28.01 0.00 0.00 11.65 4.45 31.79 17.95 91.57 4.05 8.69 8.53 5.94 25.35 16 ER1d ExonRegion 0 27.51 24.40 20.83 10.90 34.78 73.35 33.10 20.74 23.47 32.11 52.19 8.66 28.14 29.23 23.21 68.36 56.12 105.32 44.60 38.30 33.06 22.92 49.92 17 ER1e ExonRegion 0 20.46 20.03 19.33 11.26 25.77 69.68 35.26 21.51 22.09 32.58 49.97 6.73 21.19 22.38 18.80 53.28 47.31 98.41 30.56 25.53 30.04 17.29 39.92 18 ER1f ExonRegion 0 6.97 9.65 20.20 7.40 2.83 8.69 5.74 15.32 20.32 26.61 39.47 9.65 5.31 19.82 10.44 16.03 28.46 33.64 6.97 14.44 32.82 7.79 12.25 19 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 E1a_E2b KnownJunction 0 0.00 13.42 30.75 16.41 4.33 4.94 0.00 34.09 41.06 62.40 100.39 18.91 20.45 59.63 37.09 54.00 65.36 73.37 30.49 25.95 61.84 27.98 44.39 21 E1a_E4a KnownJunction 0 0.00 0.00 5.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.11 0.00 0.00 2.47 4.70 0.00 0.00 0.00 0.00 0.00 7.72 2.39 0.00 22 ER2a ExonRegion 0 3.59 0.91 3.63 4.76 0.16 1.35 3.24 6.81 2.27 3.56 4.77 0.35 6.13 4.01 2.96 4.12 1.68 5.73 0.85 3.21 3.06 0.68 5.39 23 E2_Ab KnownBoundary 0 13.63 2.83 16.23 7.33 0.00 2.84 4.02 17.95 4.51 4.57 4.79 0.00 6.82 4.94 0.00 11.79 0.00 8.95 4.80 12.46 3.09 0.00 7.68 24 ER2b ExonRegion 0 11.20 21.53 62.52 36.85 24.13 20.37 11.95 44.45 48.72 63.36 79.51 23.71 34.34 58.63 49.77 95.52 58.78 120.63 53.16 71.85 43.06 39.01 68.30 25 E2_Da NovelBoundary 1 3.70 2.83 27.79 16.18 26.91 24.30 28.79 21.15 11.83 27.75 12.63 46.67 12.99 2.47 8.90 7.01 8.79 14.26 0.00 14.76 12.11 3.00 3.84 26 E2a_E3a KnownJunction 0 0.00 19.34 27.32 11.95 26.15 32.37 14.44 30.52 24.54 27.29 48.85 32.71 56.17 27.02 22.25 30.59 17.11 44.81 31.53 29.15 42.56 8.82 28.08 27 E2a_E4a KnownJunction 0 0.00 0.00 2.84 15.38 12.73 13.51 4.24 4.39 11.34 19.74 25.37 0.00 0.00 17.19 14.22 0.00 4.77 17.29 8.94 27.61 16.68 8.82 3.24 28 Ix Intron 0 13.59 12.33 21.49 26.51 15.46 7.72 16.05 16.36 13.79 14.02 8.55 7.39 7.65 7.86 8.40 13.36 7.06 9.44 6.59 13.81 5.03 8.77 7.54 29 Ix_AR1 ActiveIntronRegion 0 3.08 10.55 11.52 10.18 7.49 5.24 13.64 15.38 10.71 6.65 6.24 0.00 6.70 8.05 5.26 5.56 4.81 2.93 2.14 13.40 2.77 4.88 4.66 30 Ix_SR1 SilentIntronRegion 0 9.79 8.59 16.97 26.38 14.15 4.26 12.39 11.18 12.77 10.02 7.09 9.55 7.32 4.79 8.06 10.09 4.24 2.91 4.94 10.48 1.20 7.17 5.97 31 Ix_AR2 ActiveIntronRegion 0 22.80 18.97 31.79 31.58 19.97 14.06 22.78 25.12 16.42 22.68 11.62 6.07 8.52 12.83 9.91 20.95 12.32 21.91 10.57 19.41 11.88 12.53 10.95 32 E3_Aa NovelBoundary 0 26.15 29.73 48.22 33.76 41.51 26.29 12.67 47.32 18.81 42.01 22.64 6.90 0.00 12.77 18.30 20.08 16.83 25.74 21.55 41.67 14.09 5.69 15.88 33 ER3a ExonRegion 0 41.59 28.72 74.91 40.97 27.09 47.26 30.06 45.94 50.42 56.25 97.73 32.54 39.73 60.01 57.30 79.77 64.27 81.01 55.59 51.34 58.96 41.03 31.11 34 E3a_E4a KnownJunction 1 71.64 34.14 75.96 35.06 34.55 14.59 11.92 42.14 38.95 38.49 103.29 6.30 55.35 48.86 61.93 61.27 36.37 117.19 46.21 58.10 75.49 39.92 26.80 35 E4_Aa NovelBoundary 0 23.34 20.85 38.38 15.52 15.03 20.39 14.31 14.79 18.23 24.01 0.00 0.00 0.00 5.00 4.45 4.36 4.77 17.58 12.42 9.08 5.25 11.51 18.52 36 ER4a ExonRegion 0 51.92 33.79 94.49 71.26 35.06 48.95 30.16 62.95 65.98 78.53 124.02 26.79 57.16 78.49 83.75 86.70 63.90 124.67 64.28 92.62 94.23 64.10 43.36 37 E4_Da KnownBoundary 0 17.04 5.85 13.81 4.53 11.12 0.00 2.12 6.08 6.71 11.04 4.53 0.00 13.31 10.18 0.00 12.13 3.65 8.42 0.00 5.94 6.30 5.76 8.19 38 E4a_E4b KnownJunction 0 49.56 25.32 60.85 47.01 21.48 31.18 26.32 61.73 62.67 65.54 91.02 18.91 40.91 105.36 68.61 74.85 66.85 130.37 30.87 96.07 88.47 68.34 45.93 39 ER4b ExonRegion 0 3.57 4.70 14.02 7.84 6.69 6.56 2.33 8.54 5.62 8.06 2.58 1.45 2.45 6.47 3.20 6.28 9.43 10.38 2.92 6.78 2.80 3.42 4.38 40 E4_Ab KnownBoundary 0 2.82 0.00 12.89 6.79 0.00 0.00 6.54 7.56 6.05 10.02 0.00 0.00 6.82 0.00 4.45 0.00 0.00 8.75 13.46 3.26 5.93 0.00 4.35 41 ER4c ExonRegion 0 36.15 32.71 130.91 77.05 33.91 71.98 32.05 70.13 65.81 89.39 135.55 37.90 64.62 95.78 84.76 82.91 77.78 159.17 68.97 116.38 100.69 58.16 64.86 42 E4_Db KnownBoundary 0 26.08 21.90 116.64 56.60 18.59 48.21 29.59 38.98 30.87 47.44 75.60 18.46 53.08 24.07 26.82 49.22 38.06 103.63 36.42 58.16 62.15 29.76 36.79 43 E4_Dc KnownBoundary 0 27.56 13.35 86.22 29.83 19.95 54.17 16.38 39.88 34.03 38.44 64.65 24.76 6.82 25.13 17.80 56.40 26.27 74.78 40.57 69.86 49.11 35.64 11.44 44 E4c_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45 ER4d ExonRegion 0 31.75 24.63 155.35 70.42 24.38 71.31 31.92 63.38 52.15 67.79 115.76 36.56 50.03 74.53 61.57 74.30 69.69 125.85 56.63 103.55 94.02 50.70 31.98 46 ER4e ExonRegion 0 15.41 15.65 126.79 59.68 16.76 33.94 19.88 63.92 56.12 66.35 85.92 52.53 29.73 56.97 61.97 50.69 62.03 83.71 36.12 76.72 54.14 36.60 20.45 47 E4d_E5a KnownJunction 0 12.74 17.96 144.82 78.78 34.89 26.86 19.52 80.79 65.94 81.15 67.07 88.38 28.57 60.98 44.38 54.00 72.28 84.81 42.64 58.23 37.44 49.60 23.47 48 ER5a ExonRegion 0 25.10 25.14 159.84 96.12 24.34 49.95 18.68 78.84 65.10 96.95 91.89 44.38 53.48 82.22 98.08 76.82 66.16 103.17 70.70 90.51 78.23 46.97 39.85 49 E5_Da KnownBoundary 0 52.38 47.82 163.30 101.69 28.78 89.89 23.23 63.83 65.19 96.43 142.19 41.86 78.08 104.48 122.38 155.86 65.54 157.94 104.85 97.41 89.76 88.60 62.74 50 ER5b ExonRegion 0 58.75 30.50 190.13 101.22 20.76 70.63 25.23 70.45 72.60 106.04 126.53 43.76 45.13 104.29 83.04 108.12 72.62 140.98 74.90 102.36 88.80 65.10 60.72 51 E5_Db KnownBoundary 0 85.05 15.26 181.84 88.40 24.45 74.11 38.86 62.43 63.31 84.21 111.50 73.07 27.27 68.22 67.87 87.84 67.60 140.20 57.13 98.11 65.11 43.29 52.16 52 ER5c ExonRegion 0 49.00 50.16 166.87 100.08 40.72 93.14 34.10 79.70 80.38 100.61 125.14 32.71 34.12 92.54 86.49 102.86 71.81 184.99 58.77 78.70 86.86 51.49 69.67 53 E5_Dc KnownBoundary 0 29.41 61.04 170.93 104.28 62.05 90.40 38.64 75.95 77.75 104.25 96.34 12.45 41.56 70.40 88.63 99.12 79.85 177.88 92.90 114.03 72.71 66.56 70.00 54 ER5d ExonRegion 0 52.05 60.02 163.28 89.30 46.24 75.08 37.04 86.26 74.85 94.89 130.74 37.44 50.74 79.68 90.91 104.29 76.38 128.74 74.37 78.09 82.94 67.62 60.33 55 E5_Dd KnownBoundary 0 47.56 51.18 105.94 68.32 33.53 31.06 29.19 66.87 49.77 57.81 83.23 67.37 12.50 47.62 64.78 84.93 52.27 72.58 53.93 46.15 65.55 48.13 27.40 56 ER5e ExonRegion 0 34.03 54.18 62.44 41.92 35.07 28.15 23.49 39.73 32.80 34.15 34.85 15.10 14.21 21.07 30.97 24.83 17.88 27.87 19.85 29.26 21.55 20.45 21.08