Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 OTUD5 Gene 0 166.70 79.69 226.87 140.94 107.15 104.73 70.46 157.78 163.00 150.79 176.28 119.23 127.25 165.48 242.47 199.02 165.16 115.51 126.44 66.30 228.67 160.52 132.14 2 428668 Transcript 0 11.15 6.13 21.93 7.72 11.90 7.08 8.12 15.87 19.08 16.05 10.51 3.65 4.55 10.57 25.51 28.43 14.70 23.28 24.66 18.96 41.60 25.06 33.35 3 156084 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 396743 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 376488 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 453548 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 455452 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 484499 Transcript 0 26.25 6.55 36.92 22.22 19.50 9.66 15.02 14.13 18.04 21.97 11.00 6.36 9.54 11.41 18.92 21.76 12.28 26.95 13.25 13.94 10.25 13.09 12.38 9 481142 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 IG6 Intergenic 0 6.04 1.38 11.42 1.66 5.82 2.49 1.62 10.16 4.76 11.16 6.57 2.91 2.03 8.98 16.06 10.51 6.73 5.38 6.93 7.52 6.29 3.68 4.39 11 IG6_SR1 SilentIntergenicRegion 0 6.08 1.39 11.48 1.67 5.85 2.51 1.63 10.21 4.78 11.22 6.61 2.92 2.04 9.03 16.15 10.57 6.77 5.40 6.97 7.56 6.33 3.70 4.42 12 ER1a ExonRegion 0 22.30 12.27 41.34 15.44 23.81 14.16 14.33 27.68 36.80 32.10 21.01 7.29 9.11 21.14 46.57 56.85 29.41 46.56 49.32 37.91 76.96 50.13 66.71 13 E1a_E3a KnownJunction 0 0.00 0.00 2.51 0.00 0.00 0.00 1.90 4.07 1.36 0.00 0.00 0.00 0.00 0.00 4.45 0.00 0.00 0.00 0.00 0.00 6.24 0.00 0.00 14 I1 Intron 0 4.90 5.08 23.83 11.84 12.14 27.33 7.60 20.74 19.25 28.16 24.51 8.86 12.39 27.82 39.38 58.32 31.47 32.56 30.37 18.51 55.25 32.21 38.33 15 I1_AR1 ActiveIntronRegion 0 4.92 5.10 23.92 11.89 12.18 27.43 7.63 20.82 19.31 28.26 24.60 8.90 12.44 27.92 39.51 58.53 31.58 32.68 30.48 18.58 55.45 32.32 38.45 16 ER2a ExonRegion 0 0.00 2.03 2.64 0.00 1.30 4.56 1.32 0.73 3.59 2.33 5.04 8.40 12.51 1.97 5.54 8.29 2.00 3.19 3.96 2.39 8.28 2.08 1.60 17 E2_Ab KnownBoundary 0 0.00 3.35 8.04 5.76 4.16 16.07 2.08 2.05 3.39 4.35 7.05 18.31 26.95 4.89 15.20 8.46 8.51 18.78 12.71 8.95 15.20 2.76 3.07 18 E2_Ac KnownBoundary 0 0.00 9.41 11.71 3.36 27.33 80.58 14.53 14.54 23.23 12.44 40.91 0.00 12.66 11.54 19.78 81.43 29.45 31.01 54.97 0.00 113.61 5.51 69.91 19 ER2b ExonRegion 0 0.00 6.80 6.13 0.00 13.38 48.18 9.22 8.28 14.48 6.76 28.06 8.96 11.81 8.18 26.21 47.35 18.10 12.04 29.33 4.26 71.13 6.75 39.90 20 ER2c ExonRegion 0 0.00 5.37 4.28 0.00 13.78 102.54 14.65 8.13 13.14 5.93 36.15 7.37 9.78 14.93 12.96 50.91 33.22 13.52 35.85 1.00 112.15 6.78 53.05 21 E2_Da KnownBoundary 0 0.00 0.00 3.78 1.70 0.00 0.00 0.00 2.26 3.47 1.58 4.63 10.95 0.00 0.00 4.45 28.03 13.84 7.92 23.53 5.88 40.71 10.35 20.57 22 E2a_E2d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER2d ExonRegion 0 0.00 0.03 0.52 0.00 0.18 1.73 0.18 0.14 0.88 1.12 4.08 2.49 4.95 4.61 4.65 4.93 11.17 2.35 5.24 3.15 22.31 0.74 10.58 24 E2_Ad KnownBoundary 0 0.00 0.00 1.80 1.50 0.00 2.84 0.00 0.00 4.14 2.36 10.53 5.70 0.00 2.35 13.47 0.00 8.60 5.60 4.05 3.26 19.58 0.00 8.45 25 ER2e ExonRegion 0 6.95 1.82 12.12 3.60 2.42 9.45 5.17 7.85 8.10 12.80 27.48 6.87 7.35 41.04 53.37 29.61 28.84 15.65 12.57 5.89 50.06 6.51 24.49 26 E2_Ae KnownBoundary 1 22.15 7.83 29.06 17.88 3.48 5.17 12.10 17.09 33.01 33.15 64.23 0.00 12.82 44.38 64.53 55.11 29.55 33.41 16.00 22.63 91.92 12.49 32.18 27 ER2f ExonRegion 1 46.18 15.32 58.98 31.40 16.09 37.63 24.14 39.96 60.90 62.06 95.85 12.11 29.55 106.46 147.94 78.71 89.60 48.92 28.72 39.51 135.95 47.42 50.96 28 E2_Af KnownBoundary 1 118.61 29.99 121.08 54.64 30.48 61.67 37.58 82.76 126.97 101.73 125.24 19.96 34.58 154.81 233.27 176.88 100.42 92.94 65.23 52.09 190.95 79.24 116.61 29 ER2g ExonRegion 0 93.95 29.93 112.46 53.95 44.70 69.17 53.03 85.16 115.43 106.14 177.08 69.10 68.35 180.80 286.95 146.86 185.99 58.96 101.63 59.66 218.96 135.40 98.01 30 E2b_E3a KnownJunction 0 3.70 0.00 6.18 3.60 0.00 0.00 5.83 2.55 6.08 5.80 7.79 0.00 0.00 0.00 0.00 8.20 9.35 9.33 4.71 0.00 11.37 0.00 0.00 31 E2c_E3a KnownJunction 1 134.47 43.41 198.75 78.51 91.26 101.70 84.66 137.27 173.23 132.67 277.81 44.86 74.67 274.18 372.95 218.40 309.12 97.83 144.38 94.41 341.63 139.61 129.67 32 ER2h ExonRegion 1 104.77 32.54 152.25 57.58 69.57 85.27 73.81 111.05 145.74 114.98 267.22 58.45 75.04 258.64 340.90 174.61 291.30 85.92 100.34 77.13 315.13 138.03 104.98 33 ER3a ExonRegion 0 128.00 69.31 194.93 90.46 108.37 96.68 82.66 145.26 197.50 150.95 313.91 106.03 144.29 260.43 316.92 262.78 311.90 140.11 140.73 99.03 396.93 166.06 140.30 34 E3a_E4a KnownJunction 0 26.75 2.96 24.42 5.49 3.57 2.67 0.00 4.23 7.99 17.25 10.16 5.85 0.00 11.48 18.91 12.65 0.00 26.45 3.86 9.52 0.00 13.17 0.00 35 E3a_E5a KnownJunction 0 136.17 64.59 207.68 116.24 84.21 112.04 62.98 144.99 226.10 125.96 295.65 230.18 193.33 260.88 435.01 357.43 270.69 174.10 148.43 93.32 379.62 156.45 202.23 36 I3 Intron 0 17.39 21.09 25.21 25.62 20.23 12.04 17.66 26.44 28.78 26.69 8.97 9.54 11.20 6.74 14.33 18.87 12.51 24.79 18.42 23.47 21.52 18.38 25.86 37 I3_SR1 SilentIntronRegion 0 14.59 17.50 18.53 20.78 18.22 10.42 14.60 20.01 21.53 19.49 6.54 4.33 6.68 6.02 11.06 19.37 11.58 22.14 19.29 24.44 16.84 13.75 24.40 38 I3_AR1 ActiveIntronRegion 0 26.29 33.25 29.37 33.53 28.52 15.20 24.42 33.22 39.84 31.35 12.31 15.22 17.03 8.03 14.82 15.09 15.30 18.87 18.46 21.34 17.57 27.17 22.68 39 I3_SR2 SilentIntronRegion 0 21.80 18.76 46.31 34.60 20.75 16.10 25.62 50.85 38.57 32.94 14.60 14.64 11.71 6.87 22.04 28.10 6.96 38.46 20.92 30.71 40.27 19.38 33.34 40 I3_AR2 ActiveIntronRegion 0 13.48 17.45 35.03 24.96 16.04 11.10 16.41 28.55 31.47 36.45 9.61 12.60 14.31 6.84 16.64 18.30 11.02 36.76 17.50 23.82 31.67 17.81 28.68 41 I3_SR3 SilentIntronRegion 0 22.41 23.09 14.48 39.70 29.28 13.53 23.13 36.97 29.88 39.44 12.77 13.24 18.33 10.29 31.71 39.25 22.69 35.43 23.32 33.68 40.55 26.89 53.13 42 E4_Aa NovelBoundary 0 52.82 30.46 24.69 21.18 75.30 141.85 209.77 32.65 27.26 15.58 29.27 27.16 20.45 9.54 13.35 12.22 26.93 26.53 19.20 5.75 59.06 32.09 19.72 43 E4_Ab NovelBoundary 0 38.08 9.08 52.93 51.08 95.42 31.63 123.26 36.02 34.69 37.63 17.90 6.30 15.10 9.89 18.91 15.72 13.09 49.45 16.94 29.85 16.37 20.39 40.97 44 ER4a ExonRegion 0 22.96 4.68 27.94 14.38 40.40 11.19 38.00 12.10 19.95 23.68 9.95 6.93 6.33 13.32 19.87 16.20 5.28 36.40 13.70 18.51 5.40 17.08 11.31 45 ER4b ExonRegion 0 33.09 16.75 87.15 45.59 49.61 18.70 32.05 40.00 45.42 50.76 24.45 21.03 28.74 16.67 31.33 32.81 23.17 67.07 35.30 28.32 38.59 32.67 51.41 46 E4_Da NovelBoundary 0 0.00 18.42 23.95 40.02 15.03 0.00 6.18 65.02 51.74 46.20 7.16 35.56 40.42 6.89 22.25 41.70 8.79 64.09 64.66 25.06 35.71 60.25 67.69 47 E4a_E5a KnownJunction 0 26.52 14.80 59.22 18.01 26.83 4.83 21.86 17.29 16.64 37.36 17.32 30.46 26.62 24.49 18.30 28.03 8.60 45.76 18.35 12.34 6.24 29.64 25.27 48 I4 Intron 0 47.12 34.75 29.75 46.54 30.13 17.73 22.80 44.70 28.53 35.55 14.59 8.63 15.31 8.97 17.88 20.87 14.43 32.86 20.25 16.63 29.48 27.60 31.51 49 I4_SR1 SilentIntronRegion 0 48.33 35.62 30.97 49.16 30.05 18.53 23.70 46.35 30.09 37.20 15.33 8.67 16.01 9.52 18.29 21.73 15.49 34.22 20.54 17.70 30.81 28.56 30.99 50 I4_AR2 ActiveIntronRegion 0 36.04 26.86 18.09 21.00 31.79 10.09 14.25 28.98 13.19 19.56 7.45 8.28 8.55 3.58 14.16 12.59 3.98 19.78 17.89 6.07 16.72 18.51 37.74 51 E5_Aa NovelBoundary 0 42.60 30.13 28.41 28.07 33.11 22.77 14.75 35.20 31.94 28.88 9.27 25.06 53.24 11.77 28.80 23.67 7.57 37.18 18.17 20.13 19.34 9.25 16.99 52 ER5a ExonRegion 0 243.63 108.00 361.69 235.74 176.85 182.73 100.87 301.34 364.09 271.98 426.49 264.76 212.64 371.47 571.01 483.63 438.46 292.94 323.58 142.49 479.76 331.70 265.74 53 E5a_E6a KnownJunction 0 375.77 176.22 490.11 362.22 255.18 219.36 171.48 451.32 464.75 352.29 586.25 325.91 271.57 460.95 728.48 570.11 694.06 315.83 481.99 224.16 672.38 474.25 345.38 54 ER6a ExonRegion 0 220.90 129.81 453.72 284.08 219.00 203.45 159.89 357.71 381.91 297.57 467.55 360.50 410.63 405.30 520.19 454.87 431.49 254.42 319.31 157.54 511.95 346.74 276.14 55 E6_Da KnownBoundary 0 45.64 17.56 41.04 46.21 16.38 26.92 15.46 21.65 41.61 26.43 24.48 11.70 39.12 18.89 33.99 33.41 4.30 15.96 9.22 15.40 18.66 13.04 16.22 56 E6a_E6b KnownJunction 0 244.04 117.68 484.37 271.16 250.00 195.97 154.08 358.00 370.31 296.26 451.85 345.56 377.25 344.58 500.16 421.17 355.12 198.73 263.35 175.52 443.93 259.87 255.66 57 E6_Db KnownBoundary 0 28.00 12.43 41.69 41.95 24.02 5.51 2.25 11.91 22.37 31.19 5.26 6.15 35.22 2.47 11.50 11.96 23.00 25.70 4.80 17.90 12.48 14.94 19.38 58 E6b_E6b KnownJunction 0 16.45 3.16 1.54 5.59 17.66 7.44 4.42 8.67 22.16 15.58 22.43 0.00 0.00 14.19 14.34 31.79 16.36 1.82 8.85 2.81 16.43 14.70 7.85 59 ER6b ExonRegion 1 47.13 20.88 59.72 65.33 31.57 23.23 13.06 29.96 61.26 50.39 32.73 17.61 48.46 21.65 46.23 48.35 37.19 32.89 17.20 25.53 34.82 27.22 31.13 60 ER6c ExonRegion 1 51.60 18.57 89.13 65.42 34.02 24.78 16.25 37.66 38.16 41.14 16.08 12.68 31.83 20.86 36.89 50.00 34.50 35.61 30.75 27.74 24.24 22.12 38.21 61 E6_Ab KnownBoundary 0 61.42 21.11 105.17 44.35 66.30 51.22 28.88 35.82 26.97 29.76 7.42 17.86 6.49 36.91 22.25 47.17 16.36 15.21 29.74 23.84 19.40 20.39 14.94 62 E6_Dc KnownBoundary 0 525.50 186.61 473.25 367.02 347.62 306.02 240.38 405.20 393.72 327.07 458.80 374.37 508.25 469.07 808.95 551.99 550.16 227.54 397.94 175.07 545.74 471.13 350.24 63 ER6d ExonRegion 0 354.94 152.86 518.25 319.05 298.97 266.63 196.03 392.94 389.51 326.10 478.33 347.37 450.56 437.48 590.50 513.98 479.40 238.67 352.62 181.56 510.01 397.88 309.62 64 ER6e ExonRegion 0 325.62 162.79 490.48 336.56 240.79 193.50 151.74 355.18 370.21 304.19 403.70 443.48 441.02 369.56 474.99 405.44 384.61 221.13 258.82 143.62 440.69 378.44 242.75 65 E6d_E7a KnownJunction 0 431.78 153.53 556.40 338.35 269.52 225.38 144.94 335.21 370.19 319.36 361.78 379.47 337.80 342.22 423.02 398.44 403.65 213.36 222.41 115.31 406.06 252.83 272.82 66 I6_SR1 SilentIntronRegion 0 28.14 16.39 17.03 13.47 14.81 5.09 11.40 13.15 10.90 11.04 3.94 6.97 15.44 3.87 10.75 9.84 8.85 7.96 8.57 8.29 8.12 9.29 11.67 67 ER7a ExonRegion 0 431.93 180.14 458.53 292.04 231.23 225.15 159.78 297.18 312.01 290.12 346.37 285.60 335.88 323.46 430.45 366.49 309.72 193.22 210.13 112.13 400.55 299.80 227.55 68 E7_Da KnownBoundary 1 514.46 220.29 400.93 279.52 224.45 153.95 153.24 262.38 274.97 292.85 208.47 302.20 299.49 288.01 419.80 356.74 252.36 259.95 152.85 83.28 344.10 261.65 220.41 69 ER7b ExonRegion 0 331.05 189.36 366.85 195.69 148.03 156.13 108.73 209.50 218.62 236.51 234.50 229.81 210.73 252.15 363.06 265.85 248.86 174.47 112.44 88.24 351.02 262.55 189.19 70 E7b_E8a KnownJunction 0 464.90 202.99 395.26 218.72 158.15 225.15 142.47 222.25 225.03 229.21 259.33 165.65 195.93 256.52 403.49 239.42 255.07 157.44 133.37 101.82 366.77 231.28 196.68 71 ER8a ExonRegion 0 307.00 147.04 425.20 220.67 147.17 162.45 113.76 269.37 264.22 238.94 293.50 170.39 213.37 271.79 401.81 315.10 271.64 204.12 162.08 88.45 365.24 292.20 210.89 72 E8_Da NovelBoundary 0 29.63 15.33 96.57 50.81 16.55 34.30 17.80 37.13 19.53 41.50 9.69 0.00 6.82 9.36 11.25 0.00 22.72 30.97 4.33 18.22 3.15 0.00 11.52 73 E8a_E9a KnownJunction 0 432.82 177.73 456.40 209.63 164.86 154.68 118.31 356.44 310.24 284.92 289.07 210.67 389.10 403.62 514.62 449.88 236.00 254.69 172.24 112.30 362.88 222.28 311.06 74 E9_Aa NovelBoundary 0 34.67 23.55 110.35 45.91 20.54 9.60 18.20 44.77 15.45 40.32 2.47 0.00 12.99 9.71 8.90 11.02 12.81 31.46 7.81 8.37 2.59 11.08 7.60 75 ER9a ExonRegion 0 358.42 139.76 400.40 212.07 157.59 169.40 91.49 299.52 272.97 281.26 310.26 168.39 229.32 263.14 415.90 349.64 256.77 241.91 213.48 96.90 372.62 275.13 228.98 76 E9a_E10a KnownJunction 0 264.71 110.84 264.75 166.25 194.31 117.83 79.67 205.16 230.61 196.76 212.05 165.50 201.45 181.35 361.21 309.41 181.02 205.28 170.08 69.03 272.99 228.95 219.21 77 I9 Intron 0 31.07 14.77 45.87 31.35 15.39 12.21 13.22 38.20 16.99 26.90 4.97 1.62 2.46 6.27 7.54 14.39 9.49 18.36 14.46 5.80 10.67 5.99 8.44 78 I9_AR1 ActiveIntronRegion 0 31.25 14.86 46.14 31.53 15.47 12.28 13.29 38.42 17.09 27.06 5.00 1.63 2.48 6.31 7.59 14.48 9.54 18.47 14.55 5.83 10.74 6.03 8.49 79 E10_Aa NovelBoundary 0 40.45 8.68 60.91 77.45 28.18 11.41 23.94 53.48 16.44 34.01 8.53 7.65 7.79 5.12 0.00 13.67 11.69 23.26 26.17 2.43 16.80 11.51 4.35 80 ER10a ExonRegion 0 383.46 137.57 410.73 266.43 153.96 172.78 110.55 307.72 331.52 310.23 351.19 244.22 254.24 308.02 501.19 474.96 308.93 217.74 255.89 117.57 427.30 319.97 306.33 81 E10_Da KnownBoundary 0 232.93 150.63 361.05 239.36 113.33 123.62 91.51 271.01 304.77 265.02 252.70 163.55 138.14 192.71 418.57 290.35 177.37 252.45 184.10 86.74 350.52 175.31 189.59 82 E10a_E10b KnownJunction 0 9.93 5.26 18.89 18.51 12.14 5.28 4.06 6.53 4.40 8.57 43.01 24.76 13.15 66.04 110.02 94.51 50.77 6.59 0.00 0.00 19.27 46.78 10.76 83 ER10b ExonRegion 0 234.50 104.43 331.51 212.93 137.28 169.91 100.03 210.76 221.08 203.44 230.33 150.92 146.80 198.14 325.92 296.48 178.63 203.88 222.48 78.99 346.92 203.14 214.36 84 E10_Ab KnownBoundary 0 188.11 63.74 295.11 202.67 268.25 170.58 153.82 143.10 144.07 130.76 136.61 130.24 88.63 150.22 300.88 230.62 116.22 162.08 195.68 57.46 232.59 142.06 226.13 85 ER10c ExonRegion 0 166.55 94.72 230.40 163.30 138.34 112.02 71.57 162.99 148.34 154.69 120.11 78.10 62.11 134.42 208.84 150.75 119.28 75.11 110.50 60.95 179.67 150.95 102.00 86 E10_Db KnownBoundary 0 16.82 9.87 7.18 9.82 3.40 4.20 0.00 15.28 3.85 7.20 0.00 0.00 0.00 2.18 13.72 3.85 6.92 3.81 4.52 10.16 6.86 9.80 3.16 87 E10_Dc KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 88 E10_Dd KnownBoundary 0 7.11 9.34 2.31 3.43 0.00 5.39 3.75 1.97 2.37 4.94 0.00 0.00 0.00 0.00 0.00 3.25 0.00 0.00 0.00 3.07 0.00 9.12 0.00 89 ER10d ExonRegion 0 35.98 30.50 17.16 20.44 16.05 29.34 13.24 25.93 13.59 18.35 7.73 0.00 0.00 12.99 5.80 20.80 9.90 12.93 19.11 12.77 13.22 20.84 5.87 90 ER10e ExonRegion 0 22.01 16.27 13.97 16.08 11.77 12.84 8.74 22.12 8.65 16.52 5.41 0.00 0.00 7.80 3.48 14.86 9.24 11.09 15.29 11.91 9.26 17.08 3.52 91 ER10f ExonRegion 0 6.93 4.71 7.74 8.07 3.91 8.06 2.08 5.64 5.29 8.18 2.70 1.02 1.11 2.69 2.41 4.69 2.23 6.42 7.77 4.82 4.95 4.81 2.77