Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NCRNA00105 Gene 0 53.16 11.74 55.67 28.94 26.08 8.72 14.53 35.64 24.10 25.02 26.14 22.71 21.25 64.74 105.93 62.38 50.13 42.50 19.02 33.12 33.16 17.46 44.21 2 449700 Transcript 0 38.73 14.13 33.31 16.72 21.82 10.95 16.15 23.45 17.59 15.40 14.66 17.52 19.82 42.99 79.75 49.19 34.79 22.96 20.74 30.37 26.26 16.13 42.58 3 425740 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 443929 Transcript 0 8.69 2.93 1.36 1.27 0.93 0.09 1.36 0.23 1.39 0.82 0.44 0.13 0.06 0.87 4.04 1.08 3.16 1.74 0.02 1.61 3.50 1.98 1.17 5 419737 Transcript 0 15.81 3.15 14.12 7.57 9.22 3.43 6.58 12.16 3.72 8.23 8.46 9.05 8.03 23.79 33.11 23.40 20.59 13.68 7.91 11.70 5.70 5.64 11.10 6 420411 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 ER1a ExonRegion 0 71.88 12.52 104.96 43.39 42.03 8.60 16.72 53.07 47.84 35.39 50.09 50.17 31.88 117.32 159.04 98.48 77.48 73.76 21.51 44.62 65.61 28.29 82.80 8 E1_Ab KnownBoundary 0 57.71 17.63 89.91 47.85 37.44 17.26 23.01 65.96 37.33 30.62 33.96 24.61 14.61 130.14 147.48 101.17 87.42 82.45 12.99 39.12 58.50 24.19 85.02 9 ER1b ExonRegion 0 76.60 11.28 83.86 42.32 53.39 10.62 17.83 54.69 42.21 32.32 47.51 18.14 27.92 101.15 174.78 85.74 57.14 69.87 17.39 33.20 59.56 21.66 63.41 10 E1_Ac KnownBoundary 0 95.50 17.96 57.09 36.53 32.34 7.61 6.71 49.25 35.79 31.43 46.49 24.46 41.72 93.47 180.85 84.76 74.52 50.32 24.66 27.87 54.67 8.45 52.93 11 ER1c ExonRegion 0 108.24 18.11 75.89 34.27 28.10 4.76 15.13 56.38 44.49 32.52 48.14 20.31 20.77 97.02 151.69 82.94 49.28 57.54 17.75 24.21 53.94 30.21 64.33 12 E1_Da KnownBoundary 0 187.00 43.54 88.20 47.61 34.80 6.93 31.00 70.40 44.47 36.13 55.12 19.81 6.82 102.60 166.76 113.56 42.64 74.82 17.13 26.14 69.38 55.72 89.89 13 E1a_E1d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER1d ExonRegion 0 169.24 29.07 90.16 48.86 23.19 10.19 19.88 61.04 42.15 28.08 46.68 13.31 10.34 94.56 181.97 88.83 64.67 71.21 17.64 46.34 70.97 31.29 76.57 15 E1_Ad KnownBoundary 0 182.70 22.36 70.22 47.38 24.87 18.11 25.66 40.91 30.24 17.19 44.38 30.61 35.39 117.66 211.76 65.20 45.07 41.54 7.91 42.82 48.56 20.08 47.89 16 E1_Ae KnownBoundary 0 70.01 20.19 74.51 49.61 41.85 2.73 10.51 29.66 31.77 27.56 19.11 11.85 0.00 69.16 181.59 41.87 21.04 33.41 23.25 45.89 23.17 8.63 49.17 17 ER1e ExonRegion 0 105.34 18.69 88.70 58.50 35.61 7.48 17.92 46.07 34.92 26.95 27.36 20.32 21.47 100.51 189.59 49.27 40.25 50.81 13.48 51.39 39.58 18.67 49.70 18 ER1f ExonRegion 0 57.98 11.45 100.96 56.22 32.98 12.58 13.57 52.73 46.28 27.31 35.75 17.56 18.40 98.39 200.58 86.49 77.90 62.35 18.78 48.22 48.42 27.47 60.67 19 E1_Db NovelBoundary 1 17.41 26.51 69.51 24.21 12.14 2.16 3.97 27.44 19.27 18.37 5.37 6.30 6.82 18.72 116.45 36.23 35.81 51.03 8.94 30.17 19.21 16.41 27.57 20 E1b_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 2.63 0.00 21 E1b_E2b KnownJunction 0 88.46 0.00 43.55 28.10 39.05 6.98 2.25 45.06 9.29 17.38 11.06 19.36 8.28 73.11 151.68 48.96 42.45 24.71 3.95 15.28 29.78 10.84 47.21 22 I1 Intron 1 9.42 3.48 15.63 7.66 4.58 0.00 2.72 1.76 2.52 1.75 1.98 2.27 5.29 6.83 27.05 9.16 11.30 9.75 5.45 9.47 9.79 2.85 8.04 23 I1_SR1 SilentIntronRegion 0 9.73 3.60 16.17 7.92 4.74 0.00 2.81 1.82 2.61 1.82 2.05 2.35 5.47 7.05 27.98 9.47 11.67 10.09 5.64 9.78 10.13 2.95 8.32 24 E2_Aa NovelBoundary 1 50.68 17.17 214.95 115.74 46.18 5.56 16.38 73.60 87.61 19.37 268.86 23.41 12.99 71.11 165.77 142.70 75.64 77.48 12.71 70.37 114.23 76.54 116.01 25 ER2a ExonRegion 0 17.38 5.86 2.71 2.55 1.86 0.17 2.73 0.47 2.79 1.65 0.89 0.25 0.11 1.74 8.09 2.17 6.33 3.48 0.04 3.23 4.46 1.32 2.35 26 E2_Ab KnownBoundary 1 51.34 42.89 168.06 54.97 28.61 11.36 28.66 63.30 74.83 23.24 134.46 18.31 13.47 43.03 150.57 38.62 51.33 42.45 12.42 49.66 80.68 68.46 38.33 27 ER2b ExonRegion 0 65.74 8.52 54.11 35.65 19.23 17.65 9.97 49.75 21.54 26.41 26.03 13.26 9.82 76.03 170.99 39.66 66.84 23.62 20.11 21.74 45.80 10.87 42.58 28 E2_Da KnownBoundary 1 14.08 2.89 38.11 31.70 0.00 2.90 6.01 28.34 22.60 15.85 12.48 5.40 6.82 17.78 83.07 35.97 30.48 23.30 4.14 10.87 13.96 2.69 17.67 29 ER2c ExonRegion 0 52.96 8.71 77.69 42.12 21.52 12.02 17.23 63.37 33.40 31.17 31.91 11.39 24.88 115.14 211.44 80.15 75.56 53.02 11.63 31.75 47.95 24.25 54.62 30 E2_Db NovelBoundary 0 26.97 0.00 19.13 3.10 0.00 0.00 0.00 8.34 4.98 1.37 7.26 0.00 0.00 2.47 0.00 11.36 4.77 17.16 4.80 11.57 3.15 0.00 11.44 31 E2b_E3a KnownJunction 0 68.90 16.05 77.88 41.45 15.53 5.79 9.23 56.97 22.31 31.32 35.22 0.00 18.99 78.76 107.92 78.44 72.18 56.29 16.00 26.40 49.36 30.68 35.25 32 Ix_AR1 ActiveIntronRegion 0 10.32 0.00 7.54 2.73 7.66 0.00 2.93 5.11 3.34 1.98 0.71 2.46 0.00 2.65 16.34 4.48 12.04 2.93 4.95 4.71 4.51 0.19 5.11 33 E3_Aa NovelBoundary 0 25.26 38.48 99.38 41.49 17.49 10.16 5.48 24.36 36.83 9.72 139.19 42.01 13.47 32.90 50.19 56.31 23.09 18.82 12.71 40.08 78.46 45.86 28.94 34 ER3a ExonRegion 0 76.72 5.43 66.50 34.10 25.82 9.11 11.66 45.18 26.39 32.12 31.73 14.71 19.92 102.98 142.20 66.47 48.22 46.60 12.96 31.38 52.48 20.51 57.12 35 E3_Da KnownBoundary 0 104.54 23.94 73.30 39.39 36.08 9.31 8.26 13.97 35.73 29.47 24.27 0.00 13.15 61.57 108.91 31.70 56.01 56.67 18.54 41.93 32.12 14.70 99.62 36 E3a_E4a KnownJunction 0 6.74 0.00 1.39 3.63 0.00 0.00 2.25 3.98 1.65 1.29 4.69 5.25 0.00 7.00 10.26 4.36 8.98 0.00 0.00 0.00 0.00 5.20 3.59 37 ER3b ExonRegion 0 59.89 10.77 65.95 34.46 27.22 9.95 12.62 33.00 29.24 24.81 22.88 14.34 15.34 80.24 114.77 59.58 48.67 40.29 11.19 38.11 34.99 22.97 69.03 38 E3_Db KnownBoundary 0 41.56 33.74 161.50 109.88 70.29 5.74 22.57 116.03 112.56 78.95 14.74 18.01 6.98 89.29 141.54 73.40 60.50 146.79 34.07 33.81 35.40 26.82 70.17 39 E3b_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 ER3c ExonRegion 0 38.73 14.13 33.31 16.72 21.82 10.95 16.15 23.45 17.59 15.40 14.66 17.52 19.82 42.99 79.75 49.19 34.79 22.96 20.74 30.37 26.26 16.13 42.58 41 E3_Dc NovelBoundary 0 91.87 9.74 58.84 49.91 32.60 7.50 56.53 61.53 19.24 27.86 16.64 20.26 25.97 47.50 84.80 130.48 54.14 44.85 47.25 34.07 19.34 16.17 40.38 42 E4_Aa NovelBoundary 0 354.73 127.15 288.10 184.69 155.43 35.32 67.22 159.29 185.91 154.75 60.59 67.52 38.80 69.81 187.53 218.75 163.07 238.56 146.36 129.50 60.85 54.99 122.24 43 ER4a ExonRegion 0 118.45 41.57 72.68 59.79 44.25 15.30 27.03 49.00 42.53 62.60 45.49 55.71 48.58 78.64 131.71 119.72 94.78 67.36 60.70 59.16 45.00 30.07 50.47 44 E4_Da KnownBoundary 0 103.35 11.77 81.78 46.55 35.99 9.31 28.84 61.90 24.10 39.38 36.11 57.32 40.91 55.68 130.29 116.21 47.59 53.10 36.80 51.39 25.14 11.57 85.02 45 ER4b ExonRegion 0 57.38 9.42 58.25 27.74 31.95 8.60 18.73 45.08 13.51 25.61 25.71 27.21 26.98 55.38 90.42 69.21 59.25 41.23 21.87 38.41 21.49 13.12 31.82 46 E4_Db NovelBoundary 0 41.49 6.12 36.10 25.50 43.63 8.23 11.61 45.63 15.45 12.52 20.32 5.40 19.64 26.84 40.79 42.38 39.55 23.79 21.74 33.24 20.94 2.33 21.08 47 E4b_E5a KnownJunction 0 6.82 0.00 0.00 1.53 0.00 2.90 1.81 1.68 0.00 1.18 7.05 0.00 0.00 36.38 42.28 19.31 17.86 4.44 3.58 3.26 0.00 8.88 8.62 48 Ix Intron 0 41.57 5.15 13.30 8.36 7.63 3.49 9.23 18.78 6.41 14.08 7.35 12.26 7.34 17.79 46.38 32.95 24.05 12.51 13.14 16.18 9.06 5.94 12.09 49 Ix_SR1 SilentIntronRegion 0 42.09 5.22 13.47 8.47 7.72 3.53 9.34 19.01 6.49 14.25 7.44 12.42 7.43 18.01 46.95 33.37 24.35 12.66 13.30 16.38 9.18 6.01 12.25 50 E5_Aa NovelBoundary 0 14.08 3.29 35.24 18.41 8.66 17.38 25.75 20.87 3.50 19.21 4.79 20.26 0.00 14.54 36.96 15.47 13.09 29.47 23.25 23.71 8.40 3.12 15.54 51 ER5a ExonRegion 0 9.76 4.72 11.60 7.78 10.38 4.54 9.73 11.60 3.86 14.36 9.17 15.46 13.15 22.34 29.93 27.87 25.86 22.36 14.09 16.84 7.01 6.20 14.46 52 E5_Ab KnownBoundary 0 83.50 106.49 87.55 59.97 101.61 47.19 137.04 87.57 61.54 72.04 19.95 29.56 26.78 14.83 33.75 135.09 74.99 143.01 60.05 110.45 65.05 25.60 56.51 53 ER5b ExonRegion 0 9.80 3.38 23.43 7.33 5.75 3.05 5.79 16.93 4.75 12.93 10.35 13.68 10.09 14.77 34.29 25.71 18.15 28.16 9.01 19.42 7.94 4.14 6.16 54 ER5c ExonRegion 0 5.08 1.63 0.74 0.82 3.75 1.10 2.65 2.42 1.24 0.00 0.39 2.60 0.00 4.87 2.90 0.59 0.00 0.37 0.00 0.00 0.00 0.00 0.59