Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CA5BP Gene 0 29.04 34.17 81.15 36.90 23.94 23.15 20.43 38.16 24.11 43.24 55.15 26.06 30.81 48.07 43.93 32.35 31.01 94.83 30.32 63.24 28.31 28.02 33.94 2 433273 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 432029 Transcript 0 0.00 2.03 10.42 5.45 0.00 0.92 0.66 1.73 1.24 6.31 2.90 0.00 2.35 2.44 8.70 4.46 0.00 5.54 3.19 3.19 3.31 2.08 4.40 4 380336 Transcript 0 8.16 13.48 13.60 13.58 9.31 5.90 11.12 11.68 11.53 15.93 22.96 19.05 14.86 27.31 15.24 12.62 14.14 53.33 19.18 33.22 13.30 16.49 20.73 5 448692 Transcript 0 1.05 0.55 0.90 2.12 2.43 0.45 1.88 1.40 1.90 1.23 4.88 3.15 4.62 5.42 4.99 2.16 1.35 3.84 4.31 3.09 1.58 1.33 2.16 6 380334 Transcript 0 0.16 1.51 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.84 0.11 0.00 0.00 0.41 0.47 0.47 0.00 0.00 0.00 7 380333 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 380331 Transcript 0 2.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 3.57 1.93 1.58 2.44 0.06 0.41 0.91 1.80 0.00 2.04 0.00 0.90 0.41 9 435806 Transcript 0 1.89 3.61 0.52 0.13 0.92 0.26 2.48 0.61 0.67 1.27 2.10 2.28 2.81 3.23 1.54 1.48 1.45 1.62 0.49 4.82 1.34 0.75 1.81 10 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 E1a_E4a KnownJunction 0 6.74 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 2.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 12 ER1b ExonRegion 0 2.03 0.85 0.51 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.56 4.33 0.00 0.68 3.02 0.00 0.00 0.85 0.13 0.27 0.18 0.00 0.00 13 E1b_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER1c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 ER2a ExonRegion 0 0.00 0.20 0.00 0.08 1.80 0.00 0.87 0.00 1.16 0.37 5.06 0.00 2.07 11.56 8.48 2.74 0.00 0.04 4.59 4.13 4.15 1.40 0.00 16 E2_Da NovelBoundary 0 16.97 0.00 7.18 1.80 8.49 13.23 0.00 0.00 4.57 0.00 16.37 0.00 0.00 25.96 13.35 6.66 0.00 28.44 30.59 14.45 8.83 2.76 15.02 17 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 3.99 0.00 2.12 0.00 1.56 1.21 4.69 0.00 6.82 0.00 4.82 0.00 0.00 5.89 4.80 0.00 0.00 2.88 0.00 18 I2 Intron 0 3.32 2.76 6.87 2.33 2.80 4.60 2.77 1.88 2.31 2.68 14.95 2.98 4.93 15.24 14.89 7.16 7.93 24.09 12.32 14.01 6.45 1.74 8.59 19 I2_AR1 ActiveIntronRegion 0 0.54 2.36 6.96 1.77 0.55 2.44 1.27 2.62 2.96 2.01 14.45 2.57 5.05 20.74 15.27 5.78 2.21 26.84 14.61 8.41 4.41 1.35 7.66 20 I2_SR2 SilentIntronRegion 1 2.31 0.72 9.14 1.11 0.56 5.07 1.39 2.57 1.32 3.34 15.41 5.32 6.13 10.58 11.75 2.44 2.61 20.71 4.86 7.01 2.29 0.39 4.39 21 I2_AR2 ActiveIntronRegion 1 10.94 7.98 5.74 6.14 10.50 10.30 8.61 1.15 3.21 5.79 20.83 4.66 9.02 18.63 20.88 16.08 25.90 34.05 18.62 28.02 17.35 5.11 17.52 22 ER3a ExonRegion 0 0.16 1.51 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.84 0.11 0.00 0.00 0.41 0.47 0.47 0.00 0.00 0.00 23 I3 Intron 1 3.69 7.98 3.98 2.66 0.00 2.40 4.62 2.25 4.81 6.70 14.32 0.00 6.73 7.83 11.61 6.48 8.63 15.22 9.72 14.84 16.33 0.00 8.96 24 I3_AR1 ActiveIntronRegion 1 3.75 8.12 4.05 2.70 0.00 2.44 4.70 2.28 4.90 6.81 14.57 0.00 6.81 7.97 11.81 6.56 8.73 15.49 9.89 15.10 16.61 0.00 9.12 25 E4_Aa NovelBoundary 0 7.26 2.76 3.13 3.83 4.33 0.00 2.25 2.55 7.55 10.34 14.95 0.00 13.64 25.55 32.63 11.62 17.86 52.98 23.72 50.75 18.22 10.90 4.27 26 E4_Ab NovelBoundary 0 12.59 14.93 8.13 5.93 0.00 11.30 5.65 5.09 6.45 19.69 9.42 0.00 6.82 31.08 32.76 8.29 3.93 70.64 14.02 26.85 19.27 2.57 24.16 27 ER4a ExonRegion 0 8.55 8.92 4.29 3.72 6.28 5.50 4.99 1.40 3.18 6.70 13.60 0.33 5.59 14.55 17.07 8.80 16.63 32.48 16.42 16.04 11.95 4.65 15.36 28 ER4b ExonRegion 1 63.50 49.19 8.75 11.31 53.22 37.37 48.48 15.56 15.39 30.33 91.83 0.00 7.97 61.38 56.92 69.82 95.62 96.96 53.14 83.96 59.81 46.76 76.35 29 E4a_E8a KnownJunction 1 38.15 47.43 9.82 17.31 27.76 17.21 43.10 25.01 19.24 31.70 64.65 0.00 26.13 26.43 41.04 27.17 11.31 75.78 12.71 72.29 7.85 29.02 51.05 30 I4_AR1 ActiveIntronRegion 0 2.57 0.00 1.36 0.00 0.00 0.43 1.53 0.45 4.07 1.93 2.67 6.65 1.61 3.65 4.91 2.67 2.12 4.59 0.76 5.65 8.05 0.49 1.88 31 ER5a ExonRegion 0 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 1.07 3.95 2.14 3.92 0.00 1.65 3.66 1.51 0.00 3.45 0.00 0.00 1.63 32 E5_Da NovelBoundary 1 0.00 0.00 5.50 1.37 0.00 0.00 3.97 4.44 0.00 3.79 2.68 33.61 0.00 6.00 15.70 0.00 15.80 5.14 3.95 9.08 3.15 5.39 0.00 33 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 E6_Aa NovelBoundary 0 3.41 0.00 10.29 1.50 0.00 0.00 3.71 2.30 1.79 0.00 2.11 0.00 0.00 9.54 4.45 3.59 13.93 0.00 0.00 8.50 3.15 0.00 12.29 35 ER6a ExonRegion 0 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 3.74 3.78 4.19 1.59 0.25 0.00 0.00 1.26 0.00 1.45 0.00 0.71 0.00 36 E6a_E8a KnownJunction 0 6.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 9.48 0.00 0.00 4.24 0.00 0.00 0.00 4.44 0.00 3.26 0.00 2.88 0.00 37 ER7a ExonRegion 0 2.40 1.54 2.76 0.00 2.02 0.00 5.50 1.91 1.39 0.66 5.83 8.37 6.15 4.98 1.55 5.61 3.74 0.70 0.00 6.38 2.48 0.00 5.53 38 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 I7_AR3 ActiveIntronRegion 0 2.86 3.54 8.80 4.14 3.48 2.15 6.32 1.17 4.40 3.33 9.04 12.53 23.90 5.21 3.20 8.05 5.66 9.32 3.37 10.50 6.33 2.84 9.82 40 ER8a ExonRegion 1 20.29 23.63 27.04 21.50 13.53 7.40 13.40 31.48 21.76 36.31 61.84 9.66 15.82 36.57 35.74 40.33 49.90 67.06 36.58 65.54 31.03 40.01 38.71 41 E8a_E9a KnownJunction 0 0.00 0.00 0.00 1.90 0.00 0.00 0.00 2.55 1.50 0.00 2.05 0.00 0.00 2.24 0.00 0.00 3.55 0.00 0.00 0.00 0.00 0.00 0.00 42 E8a_E10a KnownJunction 0 16.82 17.23 36.40 39.46 14.26 21.41 15.24 33.76 14.29 24.04 9.11 12.60 8.28 9.65 0.00 8.63 16.46 50.74 17.79 29.98 15.81 11.76 0.00 43 E8a_E12a NovelJunction 0 0.00 6.51 0.00 0.00 3.48 2.67 0.00 1.73 1.77 2.28 7.84 6.30 6.82 7.06 0.00 0.00 0.00 2.03 4.80 3.26 2.66 2.82 11.27 44 E8a_E13a NovelJunction 0 3.19 0.00 14.19 1.76 11.29 2.44 2.03 5.46 5.79 3.14 9.63 0.00 6.82 13.95 24.72 0.00 0.00 7.05 4.80 3.26 13.59 19.53 10.93 45 Ix Intron 0 8.29 7.40 14.11 12.73 8.99 3.59 7.63 10.53 4.74 4.40 6.93 18.15 26.43 6.75 5.32 5.66 7.02 6.28 4.28 13.46 3.95 4.78 5.26 46 Ix_SR1 SilentIntronRegion 0 9.66 8.36 16.32 14.83 10.30 4.19 8.89 12.26 5.52 5.13 8.07 21.14 30.79 7.79 5.93 6.59 8.18 7.19 4.78 15.40 4.46 5.57 6.13 47 E9_Aa NovelBoundary 0 21.41 3.29 19.87 11.99 7.13 0.00 6.36 14.79 5.53 8.06 6.63 12.90 13.64 5.30 5.56 13.07 0.00 5.64 4.80 9.46 5.81 2.88 0.00 48 ER9a ExonRegion 0 4.19 1.99 3.59 6.51 3.94 1.80 4.54 3.06 3.38 3.35 7.73 12.61 9.61 7.87 6.67 5.89 1.84 9.45 7.84 8.24 2.16 1.02 8.64 49 E9_Da NovelBoundary 0 14.52 8.95 22.06 10.55 11.80 2.90 3.80 6.41 0.00 8.65 10.42 6.15 18.67 10.24 9.64 12.30 13.37 14.01 9.60 9.01 9.14 13.96 16.56 50 ER10a ExonRegion 0 47.05 46.07 45.10 49.04 59.06 42.20 38.20 48.94 38.28 49.04 65.01 33.51 40.99 43.02 43.58 35.57 46.66 61.17 33.78 99.11 27.64 30.69 26.37 51 E10_Da NovelBoundary 0 19.56 14.41 26.67 13.12 4.07 0.00 6.76 2.14 7.41 9.32 2.68 0.00 13.64 7.30 15.08 4.36 4.11 6.14 16.47 5.37 0.00 2.51 7.60 52 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 E10a_E12a KnownJunction 0 26.08 36.31 30.25 46.21 19.44 5.00 34.01 20.74 17.65 23.88 54.70 36.16 27.11 40.97 11.13 38.45 19.64 26.94 7.91 56.69 19.89 11.94 14.51 54 E10a_E13a KnownJunction 0 24.75 5.79 9.46 13.48 12.31 0.00 1.63 9.90 16.78 14.59 16.79 6.00 38.96 14.19 15.45 30.68 22.44 4.15 17.13 6.07 13.47 27.86 7.68 55 Ix Intron 0 5.93 12.74 4.75 5.28 8.74 1.47 4.85 3.26 2.58 3.99 6.57 8.68 5.63 9.83 4.92 6.54 2.86 7.91 3.61 9.79 2.35 5.00 7.24 56 Ix_AR1 ActiveIntronRegion 0 2.90 13.97 0.79 5.01 11.07 0.64 2.94 1.90 5.88 4.21 4.16 0.63 1.43 10.07 3.38 5.92 5.36 18.33 4.36 7.65 4.14 4.32 11.26 57 Ix_SR2 SilentIntronRegion 0 5.44 19.71 7.57 8.63 10.52 1.94 4.98 6.45 3.60 7.98 10.57 15.51 4.73 11.02 3.65 10.32 4.56 9.81 2.86 17.93 3.19 9.32 11.43 58 E11_Aa NovelBoundary 1 13.63 18.75 22.18 18.88 4.33 0.00 9.54 8.38 3.07 10.05 5.05 45.46 12.99 11.89 4.45 6.92 3.93 7.54 3.48 11.76 2.90 8.08 3.84 59 ER11a ExonRegion 0 5.14 8.20 0.08 0.00 2.17 0.00 3.22 0.00 0.18 0.00 3.16 5.29 2.98 5.23 1.66 2.41 0.00 2.84 0.00 11.62 1.78 1.69 2.42 60 E11_Da NovelBoundary 0 2.82 22.56 14.55 18.81 7.72 2.67 5.43 13.14 3.24 5.51 12.42 12.60 15.10 9.83 10.75 11.96 3.65 15.46 0.00 20.39 0.00 4.78 7.60 61 E11a_E12b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 62 E12_Aa NovelBoundary 0 8.89 19.93 15.79 22.44 14.60 10.11 28.44 5.05 8.77 18.27 36.59 37.81 39.28 21.13 5.07 31.62 12.34 14.26 11.86 19.56 7.60 9.92 3.59 63 ER12a ExonRegion 1 27.44 53.01 33.25 43.39 20.25 17.05 38.57 21.43 26.14 32.57 69.65 61.62 73.32 61.28 16.44 48.35 21.57 41.51 38.01 78.79 23.36 33.89 33.18 64 ER12b ExonRegion 1 21.63 55.46 22.57 40.76 35.58 34.56 32.94 29.08 27.44 53.78 87.38 71.90 71.46 76.16 32.11 42.45 31.56 91.43 38.51 97.09 23.47 37.07 45.42 65 E12_Db KnownBoundary 0 20.37 30.72 32.26 54.11 91.68 30.44 71.68 32.78 32.15 64.52 77.86 58.67 71.59 63.16 56.74 45.89 29.83 173.90 54.78 102.01 8.71 33.80 75.55 66 ER12c ExonRegion 0 24.48 40.43 40.80 40.75 27.94 17.71 33.36 35.03 34.60 47.80 68.89 57.15 44.57 81.92 42.82 37.86 42.41 159.98 57.53 99.66 39.89 49.46 62.20 67 E12_Ab KnownBoundary 1 17.71 59.66 33.74 36.56 21.22 35.43 25.22 28.51 33.10 63.88 89.86 113.14 32.63 92.12 31.77 54.86 55.35 189.44 91.86 165.10 56.28 73.05 62.23 68 ER12d ExonRegion 0 15.06 40.06 35.45 23.03 27.82 29.89 30.17 22.10 21.50 30.46 62.70 27.82 35.98 72.73 35.89 38.03 37.01 109.36 39.69 94.40 32.33 35.69 43.12 69 E12_Dc NovelBoundary 1 19.26 41.90 15.70 14.82 11.54 7.89 58.29 12.36 13.83 21.36 59.96 46.82 20.78 56.57 4.45 20.93 32.26 68.40 50.82 73.76 29.78 28.23 16.39 70 E12_Dd NovelBoundary 0 10.52 29.34 24.75 18.98 31.75 11.92 28.40 14.66 18.00 27.56 49.01 36.91 40.74 36.44 24.72 11.28 17.39 92.11 29.84 74.08 11.43 35.52 30.05 71 ER12e ExonRegion 0 3.78 11.91 0.26 0.78 1.34 1.57 6.15 1.73 2.47 6.96 3.59 0.00 7.71 9.16 6.01 0.85 4.95 6.20 2.96 10.94 3.78 2.83 2.94 72 Ix Intron 0 49.50 114.26 139.18 77.27 64.87 40.34 52.67 57.31 30.88 62.39 38.91 59.19 58.86 38.76 36.05 20.52 18.39 78.57 35.17 88.31 14.47 46.93 27.26 73 Ix_AR1 ActiveIntronRegion 0 12.57 37.64 19.56 22.69 27.72 26.90 35.45 18.59 20.79 29.45 33.98 70.23 83.63 37.96 14.51 14.53 10.76 32.04 16.31 74.07 5.13 42.69 17.78 74 Ix_SR1 SilentIntronRegion 0 4.06 23.39 17.50 19.47 33.86 21.10 21.83 14.82 14.12 21.64 14.08 69.04 108.36 24.07 12.17 4.56 3.80 6.72 8.55 65.29 0.85 29.55 6.76 75 Ix_AR2 ActiveIntronRegion 0 66.39 151.52 177.84 101.42 84.41 46.57 63.74 74.95 36.04 77.12 42.94 61.04 52.99 40.44 42.91 23.29 21.43 90.02 43.00 98.12 16.50 53.17 31.66 76 Ix_AR3 ActiveIntronRegion 0 36.34 69.76 188.41 57.66 26.08 36.93 31.01 40.97 26.35 53.06 36.52 19.49 20.52 38.08 46.88 23.49 21.78 136.38 35.85 65.20 27.20 24.26 28.62 77 E13_Aa NovelBoundary 0 78.75 115.44 332.42 116.40 56.37 18.57 50.17 86.79 34.66 88.64 29.06 23.86 7.30 41.44 49.57 70.24 33.66 222.07 32.94 102.14 21.00 30.31 42.85 78 ER13a ExonRegion 0 61.05 57.41 244.68 82.53 36.65 44.44 24.98 90.21 45.07 90.45 84.90 29.79 44.56 72.40 97.01 49.17 41.36 191.96 42.63 86.63 50.31 39.99 47.98 79 ER13b ExonRegion 0 0.00 2.03 10.42 5.45 0.00 0.92 0.66 1.73 1.24 6.31 2.90 0.00 2.35 2.44 8.70 4.46 0.00 5.54 3.19 3.19 3.31 2.08 4.40