Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CXorf23 Gene 0 27.01 46.64 30.62 44.36 36.92 26.94 34.38 28.36 29.05 22.02 18.46 32.40 41.37 24.08 18.16 19.06 17.69 14.49 11.86 25.27 6.51 14.32 11.52 2 379682 Transcript 0 7.01 15.70 9.71 7.12 14.52 18.85 19.91 12.28 13.81 10.04 14.28 24.97 30.90 17.87 6.44 10.72 6.97 2.40 5.30 10.78 2.60 10.27 11.13 3 379687 Transcript 0 45.09 64.61 43.96 63.35 50.43 36.15 37.37 38.33 37.15 27.45 14.40 21.63 22.01 19.20 17.45 14.88 9.92 15.53 11.57 22.05 4.11 16.06 10.74 4 356980 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 472158 Transcript 0 3.17 4.69 3.22 7.87 2.90 4.49 5.59 3.32 3.39 2.67 1.58 2.96 4.82 5.01 2.75 4.28 1.12 3.00 1.95 3.90 0.60 0.71 2.39 6 340625 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 471203 Transcript 0 1.73 0.71 2.09 3.31 3.74 2.35 9.15 2.84 1.71 0.20 0.90 2.02 5.76 1.88 1.81 3.10 8.70 4.18 4.08 2.73 0.51 1.21 1.03 8 466702 Transcript 0 0.19 1.74 1.01 3.13 3.09 0.00 2.39 4.97 4.99 0.60 0.00 0.23 0.00 0.12 0.00 0.00 0.00 0.10 0.00 1.48 0.00 0.00 0.21 9 ER1a ExonRegion 0 2.78 2.61 2.70 1.83 9.63 5.19 0.87 2.91 2.51 0.00 3.42 2.47 7.50 4.13 2.16 12.06 3.21 5.28 11.19 3.77 4.85 1.49 4.78 10 E1_Ab KnownBoundary 0 7.19 9.47 6.24 26.00 17.15 8.52 5.43 15.32 8.71 9.05 11.74 6.30 20.45 6.83 9.64 25.55 9.16 12.02 34.73 11.76 16.37 5.88 16.30 11 ER1b ExonRegion 0 3.60 3.15 3.74 4.91 6.82 3.48 4.40 7.65 8.77 1.32 8.36 4.76 8.21 13.52 6.17 17.02 13.78 9.61 18.63 5.37 21.87 7.66 9.47 12 E1a_E2a KnownJunction 0 2.82 0.00 2.69 6.76 4.33 4.77 3.40 10.31 12.47 2.85 2.63 7.65 0.00 25.25 0.00 8.03 21.97 10.16 0.00 9.65 22.61 15.00 4.18 13 ER2a ExonRegion 1 8.21 12.39 14.75 26.33 20.54 19.59 25.50 22.57 21.71 17.32 30.70 41.71 53.62 47.15 14.66 29.25 39.87 22.59 19.56 35.23 19.04 14.75 21.26 14 E2a_E3a KnownJunction 0 23.93 20.33 18.04 35.43 40.07 48.61 59.49 17.83 25.23 26.70 22.53 64.97 53.89 60.86 32.26 45.63 63.96 52.27 39.81 66.60 37.19 16.84 54.03 15 ER3a ExonRegion 0 15.75 20.74 22.58 31.34 20.69 26.83 44.52 18.18 24.66 21.33 38.68 52.77 50.00 55.41 20.89 41.93 44.30 32.31 29.37 42.68 22.06 16.73 17.83 16 E3_Ab KnownBoundary 0 27.78 35.98 11.65 53.61 39.05 37.59 24.73 23.45 24.83 22.51 40.33 55.22 62.50 42.73 15.20 33.32 38.52 9.49 16.47 29.66 8.71 27.68 26.80 17 ER3b ExonRegion 0 14.91 23.14 21.62 48.88 37.18 21.19 55.63 24.21 30.60 23.21 36.17 65.48 80.25 34.74 21.12 27.60 39.24 11.30 10.24 41.83 3.50 20.85 10.77 18 E3_Ac KnownBoundary 0 20.82 53.48 20.96 65.46 50.59 10.05 97.38 35.78 28.70 25.52 31.22 52.22 77.11 23.54 14.96 36.49 40.21 12.06 9.22 53.12 3.15 23.39 23.65 19 ER3c ExonRegion 0 17.23 32.43 12.40 36.73 34.16 24.61 49.81 17.67 20.91 15.89 26.11 69.54 99.73 36.03 18.80 25.90 39.78 10.01 15.73 31.09 6.97 22.11 10.34 20 E3_Da NovelBoundary 0 0.00 0.00 1.39 1.93 0.00 0.00 6.76 0.00 1.42 1.64 0.00 6.30 19.80 0.00 0.00 4.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 E3a_E4a KnownJunction 0 21.56 27.43 6.00 17.95 28.78 2.90 33.17 12.49 19.47 8.52 22.32 20.26 53.57 29.02 15.95 15.30 21.79 5.10 3.95 16.62 14.95 11.76 4.35 22 ER4a ExonRegion 0 12.99 27.59 17.02 26.36 23.32 22.39 29.89 19.42 19.49 17.21 36.56 57.78 94.55 35.36 18.00 33.77 28.41 12.57 10.17 23.54 11.22 18.15 10.56 23 E4_Da NovelBoundary 0 0.00 0.00 0.00 1.66 0.00 0.00 8.08 2.46 3.82 6.31 2.16 13.05 27.27 7.36 0.00 8.63 22.63 0.00 0.00 5.88 0.00 2.82 0.00 24 E4a_E5a KnownJunction 1 20.52 44.20 36.04 32.26 41.77 35.04 62.62 17.79 17.82 15.47 23.01 37.36 139.76 24.43 24.11 38.37 8.98 17.53 17.51 27.61 2.66 27.80 21.00 25 I4 Intron 0 3.82 5.81 0.88 3.48 5.41 2.66 7.16 3.40 2.91 2.63 3.31 14.90 25.07 6.27 3.47 7.97 5.66 1.86 2.80 7.20 2.33 1.37 1.55 26 I4_SR1 SilentIntronRegion 0 3.83 5.83 0.89 3.49 5.43 2.67 7.18 3.41 2.92 2.64 3.32 14.94 25.13 6.28 3.48 7.99 5.67 1.87 2.81 7.22 2.33 1.38 1.55 27 E5_Aa NovelBoundary 1 10.96 22.04 0.00 8.12 11.88 7.84 16.38 6.04 4.43 0.00 4.69 24.01 87.33 2.12 6.30 12.30 0.00 2.11 13.65 8.95 0.00 2.57 6.57 28 ER5a ExonRegion 0 18.85 52.43 32.54 32.48 46.67 36.26 56.37 26.72 26.97 26.75 42.36 60.69 134.05 46.12 25.86 35.28 34.13 13.64 15.10 38.69 7.28 21.36 13.48 29 E5a_E6a KnownJunction 0 27.26 21.77 38.14 42.79 68.17 30.21 63.51 30.52 30.41 18.78 43.91 117.34 73.05 35.67 25.96 36.40 29.27 10.78 0.00 40.59 5.75 26.02 7.68 30 ER6a ExonRegion 0 14.91 17.13 45.11 45.19 30.90 21.35 39.04 31.87 33.95 21.56 32.86 81.31 114.61 42.81 26.79 46.44 44.05 16.14 12.74 48.74 6.06 23.83 18.72 31 E6_Da NovelBoundary 0 0.00 0.00 2.54 6.29 18.25 0.00 22.61 10.10 1.53 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 32 E6a_E7a KnownJunction 1 19.26 44.79 53.72 44.75 32.26 33.33 26.98 43.78 38.08 29.39 31.38 44.26 135.22 38.55 38.94 50.93 58.44 21.97 0.00 49.41 13.10 44.09 30.73 33 ER7a ExonRegion 0 24.89 32.47 31.07 33.56 33.12 38.21 50.90 31.22 31.47 29.35 46.02 63.04 139.08 43.95 27.84 44.30 41.52 15.45 15.49 47.34 14.76 29.24 21.65 34 E7a_E8a KnownJunction 1 7.04 21.25 30.42 33.76 28.01 28.51 45.09 27.52 23.93 22.78 35.22 42.61 153.72 36.97 59.34 26.15 40.02 15.88 3.67 45.89 11.06 20.02 12.29 35 E8a_E9a KnownJunction 0 14.89 23.88 24.19 22.08 25.21 24.53 41.03 14.13 11.11 19.29 25.32 40.21 32.47 34.73 22.99 27.94 25.90 7.21 23.62 45.38 6.30 10.84 15.28 36 ER8a ExonRegion 0 22.30 39.65 37.42 40.79 38.03 47.61 56.84 31.17 26.03 30.76 50.12 92.93 90.79 46.93 39.48 45.43 40.44 25.74 15.70 54.26 12.04 19.05 21.19 37 ER8b ExonRegion 0 10.39 28.89 9.49 11.44 13.84 24.41 22.37 12.28 13.91 6.70 18.51 23.39 41.35 23.86 8.44 8.71 9.45 4.80 3.08 12.42 2.31 9.22 11.17 38 E8_Db NovelBoundary 0 0.00 11.45 3.49 11.52 7.30 2.33 4.50 0.00 8.16 0.00 5.37 11.70 41.23 2.47 0.00 11.71 0.00 2.57 16.00 0.00 0.00 2.76 3.67 39 E8b_E9a KnownJunction 0 3.63 2.50 9.93 2.80 15.20 13.29 17.44 12.28 13.72 13.38 10.06 26.56 20.45 11.89 4.45 12.73 4.49 0.00 7.53 9.14 2.90 11.33 11.10 40 E9_Aa NovelBoundary 0 9.41 28.81 8.69 7.92 3.90 12.78 23.89 3.49 10.27 2.79 2.00 12.60 0.00 0.00 0.00 15.21 4.58 7.13 0.00 5.88 0.00 0.00 4.35 41 ER9a ExonRegion 0 22.01 30.84 35.18 31.00 45.04 38.39 45.76 27.04 22.12 26.19 34.17 63.84 64.20 33.75 23.18 33.75 29.08 16.67 13.80 51.91 13.98 23.64 22.32 42 E9_Da NovelBoundary 0 10.82 3.35 5.44 14.68 7.81 0.00 6.49 5.87 11.34 0.00 5.32 11.40 6.82 0.00 4.45 0.00 8.60 1.99 22.87 15.21 0.00 2.63 3.93 43 E9a_E11b KnownJunction 0 20.23 18.88 18.36 18.95 36.50 23.91 34.62 18.85 13.98 21.01 31.90 66.62 20.29 19.42 0.00 29.31 15.99 9.95 16.19 30.49 8.65 11.21 15.62 44 I9 Intron 0 9.49 8.55 4.09 7.97 7.50 6.68 16.70 7.22 4.64 2.87 1.62 9.99 4.79 1.87 2.30 3.33 1.85 4.13 2.68 7.15 0.00 1.17 2.47 45 I9_SR1 SilentIntronRegion 0 9.54 8.59 4.12 8.01 7.54 6.72 16.78 7.26 4.67 2.89 1.63 10.05 4.82 1.88 2.31 3.35 1.86 4.15 2.69 7.19 0.00 1.17 2.48 46 E10_Aa NovelBoundary 0 0.00 2.50 6.65 10.89 7.81 5.45 19.52 0.00 3.21 0.00 0.00 28.96 0.00 7.95 4.45 3.25 8.88 6.43 0.00 3.13 3.15 0.00 0.00 47 ER10a ExonRegion 0 3.45 1.42 4.19 6.62 7.48 4.70 11.94 4.15 3.43 0.40 1.80 4.03 11.52 3.76 3.62 6.20 12.63 8.35 8.16 5.45 1.03 2.43 2.05 48 E10a_E11b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 6.36 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.77 0.00 0.00 0.00 0.00 0.00 0.00 49 E11_Aa NovelBoundary 0 183.22 188.91 169.01 182.56 143.12 162.52 289.00 175.22 145.20 121.77 23.48 58.07 53.57 28.19 64.28 103.99 96.03 146.54 68.05 186.70 132.02 40.05 84.34 50 ER11a ExonRegion 0 12.50 11.54 10.23 11.32 12.30 11.41 17.43 9.27 9.06 11.77 5.41 17.06 21.07 10.11 24.95 15.46 18.12 17.02 8.65 14.42 7.65 2.70 12.86 51 E11_Ab KnownBoundary 0 10.67 3.35 4.58 7.09 20.12 10.79 7.33 4.89 5.09 5.94 0.00 0.00 20.94 2.47 10.51 19.91 7.95 7.30 0.00 11.89 2.90 2.51 7.34 52 ER11b ExonRegion 0 14.77 19.37 25.30 28.98 39.31 36.76 27.27 23.54 23.97 21.30 33.55 62.88 65.77 39.56 15.82 38.00 16.98 21.82 14.11 26.29 10.49 10.81 28.95 53 E11_Ac KnownBoundary 0 13.26 36.97 28.15 40.82 31.15 17.66 34.14 30.15 31.13 21.97 32.06 90.78 74.02 31.20 22.99 24.18 9.54 25.45 16.85 30.36 19.77 7.96 34.40 54 ER11c ExonRegion 0 24.54 47.35 39.42 29.65 42.76 32.86 41.31 31.33 33.92 28.93 36.88 41.95 47.61 42.80 19.77 34.53 34.91 26.54 16.04 44.79 19.35 21.30 23.55 55 E11_Da KnownBoundary 0 0.00 9.87 5.17 15.78 3.31 13.51 27.65 4.81 6.51 4.62 6.74 11.55 26.95 9.42 10.63 0.00 14.12 6.05 4.33 20.07 3.15 2.33 0.00 56 E11a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57 E11a_E14a KnownJunction 0 20.60 27.17 37.61 13.12 35.14 24.76 13.69 24.11 28.27 23.29 37.43 13.50 19.80 36.08 37.83 27.77 24.87 16.54 22.78 29.72 5.93 20.33 27.15 58 ER11d ExonRegion 0 6.98 14.50 11.28 32.46 10.89 5.74 20.19 8.21 8.48 6.09 6.54 24.19 32.60 5.77 8.17 7.92 5.06 4.04 3.98 17.87 1.18 4.25 2.61 59 E11_Db NovelBoundary 1 10.15 61.37 10.44 50.88 21.14 11.36 20.67 26.74 9.90 3.68 4.58 26.56 89.93 7.95 35.23 4.36 8.70 14.51 19.20 38.80 2.90 0.00 12.63 60 I11 Intron 0 11.40 18.73 16.81 32.79 12.83 13.16 21.19 10.50 10.62 8.20 9.77 11.99 26.08 11.69 12.45 18.82 13.78 22.16 14.87 20.21 7.60 5.83 11.17 61 I11_SR1 SilentIntronRegion 0 11.09 13.67 12.84 24.73 11.37 8.48 16.12 6.51 7.78 4.83 6.95 10.03 19.27 10.14 9.74 12.36 9.47 13.64 11.64 14.81 6.01 6.39 9.06 62 I11_AR1 ActiveIntronRegion 0 15.31 22.98 17.19 38.20 13.53 16.20 26.00 13.16 12.78 13.42 13.48 14.48 39.67 14.40 13.03 28.19 17.14 28.76 22.77 25.71 12.72 5.17 15.91 63 I11_AR2 ActiveIntronRegion 0 8.66 9.89 16.65 44.94 13.78 14.16 30.60 22.75 11.84 8.49 11.16 13.64 36.29 14.94 18.91 21.04 15.10 24.96 20.82 22.74 11.45 5.87 14.93 64 I11_SR2 SilentIntronRegion 0 12.16 18.57 16.37 37.13 11.52 14.60 26.17 11.47 10.86 8.12 11.16 10.68 27.53 10.91 11.86 20.68 17.82 22.02 16.54 21.29 4.81 5.06 6.79 65 I11_AR3 ActiveIntronRegion 0 6.17 22.45 18.87 29.93 13.91 13.56 19.05 10.70 9.50 6.13 6.73 11.93 21.04 11.09 12.57 16.61 12.44 19.65 8.01 17.43 5.45 5.57 10.05 66 I11_AR4 ActiveIntronRegion 0 15.52 20.17 24.22 45.21 13.38 16.59 12.01 8.91 17.24 10.37 9.84 14.74 15.63 10.26 11.68 13.52 14.48 30.61 9.33 24.09 6.71 6.53 11.19 67 I11_SR3 SilentIntronRegion 0 8.68 23.75 25.08 32.10 16.03 16.62 19.30 9.11 13.04 8.13 11.41 12.37 16.16 10.72 18.45 17.00 14.18 34.39 11.63 24.29 5.34 7.21 12.76 68 E12_Aa NovelBoundary 0 16.89 17.37 19.54 48.81 3.74 2.56 12.81 11.50 15.71 8.19 2.05 11.70 20.78 9.89 8.90 8.03 4.49 10.69 4.61 24.99 14.02 0.00 3.59 69 ER12a ExonRegion 0 9.50 14.06 9.66 23.61 8.69 13.47 16.77 9.96 10.16 8.01 4.73 8.88 14.45 12.32 8.24 12.83 3.37 8.99 5.85 11.69 1.80 2.13 7.17 70 E12_Da NovelBoundary 0 3.19 0.00 32.32 50.91 3.23 5.28 22.88 17.58 14.21 7.71 12.32 12.15 27.27 7.53 19.04 15.72 9.54 3.94 4.52 20.96 0.00 5.33 0.00 71 E12a_E14a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 72 I12 Intron 0 21.65 34.71 35.59 51.72 26.74 16.20 26.38 31.98 24.93 17.19 9.31 16.95 35.78 12.24 13.78 15.20 10.63 12.24 12.37 17.52 4.75 7.68 6.83 73 I12_AR4 ActiveIntronRegion 0 6.14 8.13 11.76 10.36 12.84 14.12 26.74 3.46 9.02 0.46 5.03 10.82 1.41 1.30 2.32 5.94 3.63 0.00 1.27 7.02 1.32 5.42 2.06 74 I12_AR5 ActiveIntronRegion 0 50.58 76.38 64.21 96.13 40.24 21.51 46.25 59.80 43.48 34.92 18.51 35.18 67.45 16.76 26.33 25.89 22.37 17.68 20.41 33.13 6.37 14.92 14.02 75 I12_SR2 SilentIntronRegion 0 9.41 17.40 24.64 34.50 21.42 14.38 18.53 21.15 17.39 9.87 5.57 8.39 23.20 10.99 8.59 11.63 6.13 10.93 9.71 11.25 4.46 4.36 4.10 76 I12_AR6 ActiveIntronRegion 0 12.07 17.70 14.59 22.25 21.15 10.78 12.85 14.51 17.59 10.79 4.49 22.00 19.14 4.74 9.57 0.84 0.98 0.27 2.20 9.23 0.00 8.87 0.63 77 E13a_E14a KnownJunction 0 0.00 0.00 0.00 3.33 4.07 0.00 0.00 6.49 6.45 1.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 78 ER13a ExonRegion 0 0.38 3.49 2.01 2.92 2.10 0.00 4.78 3.46 3.53 0.00 0.00 0.46 0.00 0.23 0.00 0.00 0.00 0.20 0.00 2.96 0.00 0.00 0.42 79 I13 Intron 0 12.62 27.46 24.40 44.50 27.35 20.55 23.30 27.29 26.71 16.76 14.72 19.59 40.57 15.55 10.65 14.53 13.58 8.69 5.03 22.31 3.32 7.78 7.17 80 I13_AR1 ActiveIntronRegion 0 11.30 27.04 28.35 51.42 25.69 22.37 22.86 30.96 31.36 17.89 11.50 22.90 39.46 15.47 11.93 12.55 13.70 7.65 6.22 24.13 3.02 9.11 5.93 81 I13_SR1 SilentIntronRegion 0 15.08 28.43 17.47 32.39 30.55 17.43 24.28 20.91 18.56 14.86 20.62 13.79 42.88 15.82 8.44 18.21 13.48 10.65 2.95 19.22 3.89 5.46 9.46 82 E14_Aa NovelBoundary 1 11.19 17.96 34.65 42.62 53.23 26.29 39.79 21.85 21.06 12.71 29.74 0.00 45.61 9.48 22.62 7.52 4.58 12.44 12.14 14.32 0.00 5.88 3.50 83 ER14a ExonRegion 0 34.29 72.18 43.64 48.35 59.52 32.63 48.10 37.63 46.17 34.50 39.80 46.07 82.62 37.27 21.62 32.49 42.45 22.73 15.27 36.17 6.07 22.16 12.84 84 E14_Da KnownBoundary 0 46.53 122.54 64.49 66.89 117.91 59.06 86.87 46.13 75.55 33.93 48.43 70.37 74.83 47.97 53.53 42.21 34.03 14.59 16.66 40.72 8.59 31.23 8.71 85 ER14b ExonRegion 0 35.89 119.95 44.04 59.46 66.43 29.31 52.69 44.64 50.23 42.56 26.17 68.21 90.92 31.92 26.59 19.01 16.96 6.09 12.63 30.44 3.97 21.53 11.37 86 E14_Db KnownBoundary 1 61.42 185.16 45.44 41.69 32.43 29.13 68.54 34.34 39.26 35.32 20.43 57.17 140.41 34.38 41.16 15.47 8.88 16.08 8.38 34.13 0.00 20.27 3.50 87 ER14c ExonRegion 0 21.92 92.87 47.40 59.29 61.23 42.08 48.36 52.19 57.51 30.50 19.68 50.61 67.59 31.89 30.97 16.47 13.95 7.86 9.34 35.59 1.80 24.53 10.70 88 E14_Dc KnownBoundary 0 7.41 19.86 17.47 23.54 31.83 7.27 26.14 9.65 23.64 9.72 2.47 0.00 21.43 4.47 0.00 7.86 15.24 7.30 3.76 16.49 3.09 0.00 4.01 89 E14_Dd KnownBoundary 0 24.67 37.56 0.00 11.99 14.86 18.11 23.05 9.16 22.66 14.91 2.58 6.00 6.49 4.94 0.00 0.00 0.00 0.00 0.00 6.20 2.41 5.45 12.21 90 ER14d ExonRegion 1 21.17 58.97 14.70 35.44 44.60 28.12 59.14 23.62 48.99 26.00 7.09 21.65 51.59 13.53 0.00 14.86 16.50 9.24 8.49 29.79 4.41 9.72 19.58 91 ER14e ExonRegion 0 45.09 64.61 43.96 63.35 50.43 36.15 37.37 38.33 37.15 27.45 14.40 21.63 22.01 19.20 17.45 14.88 9.92 15.53 11.57 22.05 4.11 16.06 10.74