Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ASMTL Gene 0 30.79 30.29 97.99 52.39 21.17 4.43 12.14 36.84 44.48 10.04 170.42 33.19 19.29 65.16 78.69 88.68 47.87 39.93 7.11 32.01 92.23 50.21 54.94 2 381333 Transcript 0 6.02 5.96 8.10 4.78 7.65 1.75 3.48 1.39 3.57 0.00 20.45 0.00 1.73 10.12 10.05 9.78 5.82 3.66 2.26 6.83 12.91 9.96 21.56 3 416733 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 4.11 2.22 1.42 0.00 0.00 0.00 0.00 2.30 0.00 0.00 0.00 1.70 0.00 0.00 2.41 2.82 0.00 4 381317 Transcript 1 13.56 21.25 78.38 37.62 15.70 5.34 2.12 17.87 36.23 6.31 156.36 12.15 15.10 79.17 93.08 59.90 80.79 17.95 7.81 30.68 87.11 28.23 51.99 5 474865 Transcript 0 2.87 1.75 6.66 6.53 3.43 0.31 3.78 2.30 7.19 0.44 4.54 9.77 5.52 8.78 9.76 7.89 2.28 1.82 0.00 5.85 2.32 7.87 5.08 6 462195 Transcript 0 1.47 1.69 7.01 3.40 1.18 0.25 1.75 3.83 4.75 1.19 9.44 2.08 1.61 4.10 9.34 15.28 9.22 3.75 3.10 3.88 8.58 3.59 7.23 7 463763 Transcript 0 1.08 0.22 1.53 3.44 0.94 0.01 0.71 0.76 0.70 0.43 3.62 2.98 0.42 1.76 1.70 3.14 1.45 1.16 0.40 1.14 0.96 1.73 2.80 8 ER1a ExonRegion 1 12.03 11.92 16.21 9.56 15.30 3.51 6.97 2.79 5.83 0.00 40.90 0.00 3.46 20.23 20.11 19.55 11.64 5.38 4.53 13.66 25.83 19.92 43.12 9 E1_Ab KnownBoundary 0 0.00 6.18 20.14 14.22 4.07 2.16 6.18 4.60 8.13 0.00 22.74 0.00 0.00 15.30 9.64 4.10 4.49 9.37 4.52 8.37 17.42 11.39 30.82 10 E1_Ac KnownBoundary 0 0.00 0.00 11.65 1.93 3.31 2.27 1.77 5.18 3.65 0.00 39.01 0.00 0.00 16.42 5.19 20.76 7.57 4.97 0.00 9.08 13.28 15.19 18.18 11 ER1b ExonRegion 1 25.40 18.30 26.96 14.99 21.41 5.50 15.89 10.37 11.12 0.00 112.11 0.00 0.00 51.97 66.73 83.22 36.31 11.09 9.56 23.40 48.48 50.00 82.23 12 ER1c ExonRegion 1 10.26 6.51 33.16 15.09 6.28 3.70 6.42 16.39 17.47 1.48 128.97 5.55 5.98 36.03 37.93 61.46 37.64 11.12 3.08 17.67 53.97 23.47 34.29 13 E1a_E2a KnownJunction 0 3.70 8.81 47.01 26.27 4.24 0.00 0.00 15.94 25.52 2.66 133.03 6.00 6.66 21.84 23.98 19.48 15.05 18.61 0.00 14.13 91.06 7.47 16.99 14 ER2a ExonRegion 1 8.16 11.72 77.76 40.95 6.59 0.64 4.96 26.74 41.68 4.93 238.35 15.28 9.42 78.41 72.99 103.15 56.79 26.09 2.75 36.83 106.58 60.67 66.41 15 E2_Da KnownBoundary 0 3.04 0.00 9.22 3.43 0.00 0.00 1.90 2.30 4.17 0.00 6.32 0.00 0.00 2.71 0.00 0.00 0.00 3.65 0.00 0.00 2.72 5.69 11.10 16 E2a_E3a KnownJunction 1 9.11 19.01 88.29 40.89 11.46 0.00 13.56 42.92 38.05 9.78 127.87 0.00 6.17 47.44 29.30 72.80 27.96 15.46 12.33 39.82 84.39 29.82 30.90 17 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.95 0.00 0.00 0.00 0.00 0.00 18 ER2b ExonRegion 0 2.87 1.75 6.66 6.53 3.43 0.31 3.78 2.30 7.19 0.44 4.54 9.77 5.52 8.78 9.76 7.89 2.28 1.82 0.00 5.85 2.32 7.87 5.08 19 ER3a ExonRegion 0 5.60 17.54 59.71 20.61 8.47 2.41 9.96 19.84 27.71 7.53 112.83 11.00 16.32 74.71 68.66 47.80 38.92 7.78 3.12 23.14 72.45 29.91 32.61 20 E3a_E4a KnownJunction 0 13.56 21.25 78.38 37.62 15.70 5.34 2.12 17.87 36.23 6.31 156.36 12.15 15.10 79.17 93.08 59.90 80.79 17.95 7.81 30.68 87.11 28.23 51.99 21 E3a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 4.11 2.22 1.42 0.00 0.00 0.00 0.00 2.30 0.00 0.00 0.00 1.70 0.00 0.00 2.41 2.82 0.00 22 I3_SR1 SilentIntronRegion 0 4.00 3.84 10.97 7.68 5.05 0.31 1.14 5.31 3.79 1.45 9.29 5.79 4.93 4.18 9.49 13.78 8.50 5.36 1.09 2.17 2.63 6.08 11.10 23 I3_SR3 SilentIntronRegion 0 12.58 2.55 17.14 8.26 8.37 1.15 4.97 6.45 5.18 1.60 12.70 5.58 1.21 7.08 9.34 9.30 8.26 10.35 2.99 4.66 12.41 5.22 7.35 24 E4_Aa NovelBoundary 0 10.30 0.00 30.66 22.27 0.00 0.00 7.86 4.76 6.94 1.24 25.48 0.00 20.45 12.24 4.45 15.12 8.88 2.32 0.00 3.26 6.12 5.20 12.21 25 E4_Ab NovelBoundary 1 45.34 48.48 137.78 67.42 39.81 8.06 18.95 42.63 70.43 8.57 263.75 17.11 33.93 76.52 90.12 158.59 60.59 62.30 8.94 29.02 183.60 63.19 62.57 26 ER4a ExonRegion 1 23.83 32.27 96.73 40.93 15.80 6.33 9.44 21.80 43.03 6.84 201.71 12.99 26.02 77.33 82.55 102.87 58.46 32.78 6.27 24.50 125.47 42.34 55.42 27 ER4b ExonRegion 1 36.04 42.88 146.29 60.01 31.87 2.10 12.23 34.98 60.19 5.70 306.42 20.12 23.31 90.57 88.83 129.81 53.30 58.80 8.71 33.67 206.82 69.86 78.86 28 E4_Da NovelBoundary 0 3.63 0.00 16.44 7.16 0.00 0.00 2.16 6.37 5.27 1.34 0.00 0.00 0.00 4.71 6.18 3.76 18.23 2.53 0.00 0.00 5.81 0.00 8.37 29 E4a_E5b KnownJunction 0 34.52 49.40 169.69 72.35 49.07 0.00 12.28 43.74 67.30 5.56 382.41 38.71 21.10 127.14 74.91 107.66 60.50 61.23 14.31 50.94 226.66 84.26 108.50 30 ER5a ExonRegion 0 2.16 0.43 2.89 6.89 1.87 0.01 1.42 1.26 1.39 0.86 7.23 5.97 0.83 3.06 3.41 5.42 2.89 2.32 0.80 2.28 1.91 3.46 5.61 31 E5_Ab KnownBoundary 0 9.56 0.00 3.40 4.03 0.00 0.00 1.85 4.23 3.41 0.00 5.37 0.00 0.00 5.00 0.00 3.85 0.00 0.00 4.80 0.00 2.90 5.76 0.00 32 ER5b ExonRegion 0 30.53 35.84 171.31 78.53 32.72 6.76 19.03 56.56 69.77 3.93 371.75 58.91 24.83 118.99 124.56 140.66 85.44 79.94 7.00 53.71 188.44 102.06 65.81 33 E5a_E6a KnownJunction 0 44.23 73.93 184.68 90.80 33.96 8.57 12.32 63.75 84.69 6.29 400.36 82.23 46.59 117.49 156.75 174.66 117.44 86.97 4.52 51.13 204.30 105.20 82.89 34 ER6a ExonRegion 0 29.46 28.30 172.06 115.68 30.73 7.25 18.51 55.03 88.37 9.28 388.05 42.86 40.27 142.07 144.56 166.85 87.49 64.23 7.69 52.22 205.23 99.28 103.73 35 E6_Da KnownBoundary 0 0.00 0.00 10.29 5.53 3.40 0.00 3.89 9.36 5.06 0.00 7.37 5.85 0.00 2.12 10.38 3.67 8.98 5.89 0.00 2.36 5.31 3.12 12.04 36 E6a_E7a KnownJunction 1 20.45 27.50 185.03 93.26 22.24 0.00 24.51 51.55 61.37 1.21 403.26 24.46 45.94 96.95 49.69 109.97 40.02 79.09 4.42 60.08 183.17 75.26 99.36 37 ER6b ExonRegion 0 1.47 1.69 7.01 3.40 1.18 0.25 1.75 3.83 4.75 1.19 9.44 2.08 1.61 4.10 9.34 15.28 9.22 3.75 3.10 3.88 8.58 3.59 7.23 38 E7_Aa NovelBoundary 0 3.63 0.00 30.10 12.62 4.33 0.00 2.08 3.78 6.71 1.67 14.32 0.00 12.82 9.71 8.90 24.61 0.00 0.00 0.00 2.43 26.81 6.06 4.35 39 ER7a ExonRegion 0 44.05 51.31 128.11 62.40 24.24 4.51 18.79 35.59 54.52 10.26 238.84 32.56 20.26 102.60 109.49 133.55 75.24 56.08 4.93 35.93 143.45 71.85 84.25 40 E7a_E8a KnownJunction 1 97.80 95.77 188.14 96.36 48.90 8.35 21.60 80.55 91.12 14.67 361.72 24.91 13.15 121.31 172.82 199.43 99.77 78.97 4.14 94.73 258.23 111.51 164.75 41 ER7b ExonRegion 0 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 ER8a ExonRegion 0 87.62 76.51 211.94 118.81 57.27 12.31 24.03 90.31 109.33 22.33 456.69 85.34 54.21 157.36 168.90 212.63 135.64 88.78 11.35 74.85 246.42 131.88 131.86 43 E8_Da NovelBoundary 0 22.15 0.00 30.99 4.79 3.23 0.00 3.53 3.98 3.59 6.29 34.48 0.00 0.00 7.18 14.22 15.30 17.30 13.60 0.00 0.00 22.05 10.35 10.16 44 E8a_E9a KnownJunction 0 108.54 92.35 247.57 102.02 59.85 11.19 31.13 103.14 90.28 15.42 472.86 126.94 60.87 212.84 177.76 267.62 135.48 87.05 11.86 65.90 226.60 116.40 159.63 45 I8 Intron 0 7.02 2.45 25.57 6.39 5.42 1.82 5.02 21.63 7.06 12.88 8.83 7.42 9.17 10.73 20.74 13.95 18.20 15.23 3.98 16.86 10.25 5.83 11.76 46 I8_AR1 ActiveIntronRegion 0 4.50 0.86 13.20 5.18 1.71 0.00 2.25 7.66 2.74 2.91 9.86 1.68 0.82 9.20 12.37 6.32 11.92 4.49 0.00 4.97 5.15 6.64 3.12 47 I8_SR1 SilentIntronRegion 0 7.93 3.00 30.18 7.04 6.69 2.40 6.02 26.48 8.57 16.21 9.00 9.33 11.44 11.61 23.90 16.54 20.81 18.88 5.25 20.91 12.14 5.92 14.68 48 E9_Aa NovelBoundary 1 24.08 2.43 72.14 26.37 11.71 0.00 10.60 49.58 17.30 35.46 6.95 35.71 12.66 7.71 33.01 33.24 24.03 29.39 4.80 50.05 11.18 8.82 19.38 49 ER9a ExonRegion 0 98.37 99.40 293.49 165.09 82.51 7.22 41.77 125.07 137.34 39.88 487.87 149.92 75.27 171.06 177.78 249.31 140.85 121.40 29.27 101.66 255.12 131.99 152.17 50 E9_Da NovelBoundary 0 62.38 16.44 98.07 31.90 43.29 2.90 26.19 57.13 21.82 52.86 33.75 17.26 6.82 31.73 35.35 65.11 72.84 82.66 37.37 39.18 36.33 34.05 41.49 51 E9a_E10a KnownJunction 1 77.72 110.90 313.32 194.21 96.69 2.50 26.28 122.20 126.10 29.06 447.32 116.29 108.60 164.52 193.58 433.48 74.15 172.32 16.85 94.47 230.31 147.27 233.30 52 E9a_E12a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.45 0.00 2.62 2.72 0.00 11.35 53 I9 Intron 0 16.56 6.54 34.70 9.86 8.04 1.35 9.25 28.16 10.67 21.67 8.51 10.05 5.40 12.63 31.74 21.08 24.68 30.00 13.02 22.97 14.25 6.04 11.69 54 I9_SR1 SilentIntronRegion 0 16.58 6.54 34.74 9.87 8.05 1.35 9.26 28.20 10.69 21.70 8.52 10.07 5.40 12.65 31.78 21.10 24.71 30.04 13.04 23.00 14.27 6.05 11.71 55 E10_Aa NovelBoundary 1 26.23 34.99 137.01 81.08 30.90 2.21 10.16 51.88 49.71 26.14 105.87 52.37 18.34 63.75 70.59 162.27 20.29 90.58 3.67 53.50 92.05 61.23 89.46 56 ER10a ExonRegion 0 38.54 62.77 232.98 131.30 35.39 14.35 19.57 96.75 100.97 26.04 329.10 112.60 57.20 138.59 150.97 217.01 82.70 119.96 18.35 72.55 189.63 116.25 121.31 57 E10_Da NovelBoundary 0 11.26 2.96 22.23 2.03 3.23 0.00 4.20 17.62 1.74 17.03 7.05 0.00 0.00 13.66 33.01 20.34 22.72 17.20 0.00 35.86 8.03 0.00 11.44 58 E10a_E11a KnownJunction 0 47.93 49.86 148.31 81.64 20.71 18.00 18.77 57.79 70.69 12.87 206.16 20.26 25.81 57.86 45.74 125.95 40.95 53.18 0.00 32.60 107.93 27.25 43.11 59 I10 Intron 0 10.54 4.12 21.74 7.72 9.49 2.17 8.16 16.97 7.30 15.59 7.67 6.37 4.33 15.18 26.02 20.08 21.74 20.02 9.41 19.22 10.79 5.10 11.65 60 I10_SR1 SilentIntronRegion 0 10.97 3.92 21.14 7.59 10.00 2.21 8.46 17.08 8.43 16.28 9.08 5.25 2.99 15.80 27.70 23.29 21.09 21.28 8.83 20.01 10.09 5.02 10.62 61 I10_AR1 ActiveIntronRegion 0 9.65 4.64 23.41 8.10 8.37 2.09 7.54 16.86 4.72 14.12 4.41 9.07 7.55 13.88 22.32 12.70 23.51 17.27 10.89 17.58 12.56 5.34 14.22 62 E11_Aa NovelBoundary 0 20.45 2.89 35.01 15.25 16.13 0.00 15.77 33.27 8.36 23.05 5.21 5.70 0.00 7.42 10.38 3.85 18.79 25.99 17.98 28.44 15.14 5.20 8.37 63 ER11a ExonRegion 0 112.47 89.21 214.69 111.93 68.05 13.19 29.74 87.38 81.71 23.89 324.39 54.21 35.66 122.98 156.08 193.87 89.51 110.53 17.50 63.65 162.22 97.12 126.66 64 E11_Da NovelBoundary 0 34.90 0.00 32.64 16.38 20.12 0.00 8.26 45.96 12.04 29.76 7.32 23.56 5.84 31.67 19.66 12.13 36.84 46.51 4.61 33.11 16.99 2.94 7.94 65 E11a_E12a KnownJunction 0 110.02 98.14 175.27 86.17 34.04 10.62 22.04 51.55 68.58 10.15 280.65 42.76 20.45 90.29 183.32 161.92 53.48 64.13 28.14 76.76 139.00 96.75 102.95 66 I11_AR1 ActiveIntronRegion 0 7.92 3.81 12.82 0.95 7.51 0.86 1.86 7.23 4.29 15.19 3.60 26.69 10.58 14.62 23.16 11.10 21.62 12.04 4.47 27.87 9.28 0.97 8.24 67 Ix Intron 0 41.57 5.15 13.30 8.36 7.63 3.49 9.23 18.78 6.41 14.08 7.35 12.26 7.34 17.79 46.38 32.95 24.05 12.51 13.14 16.18 9.06 5.94 12.09 68 Ix_SR1 SilentIntronRegion 0 42.09 5.22 13.47 8.47 7.72 3.53 9.34 19.01 6.49 14.25 7.44 12.42 7.43 18.01 46.95 33.37 24.35 12.66 13.30 16.38 9.18 6.01 12.25 69 E12_Aa NovelBoundary 0 174.25 3.29 64.75 36.89 58.06 15.45 12.10 56.23 27.17 27.91 46.64 5.85 25.65 133.44 161.94 90.15 48.34 36.85 20.99 43.14 73.45 22.29 82.12 70 ER12a ExonRegion 0 43.50 54.69 136.04 66.08 15.53 5.67 14.08 47.34 55.26 8.49 194.66 33.02 10.26 76.32 119.33 102.07 36.98 46.46 6.94 37.42 98.49 57.02 54.87 71 E12_Da NovelBoundary 0 13.11 0.00 5.59 3.36 30.31 0.00 1.90 4.93 7.18 2.87 0.00 0.00 0.00 4.94 11.37 17.17 8.70 4.35 0.00 5.24 2.29 2.63 30.90 72 E12a_E13a KnownJunction 0 40.08 52.49 165.75 65.59 27.84 8.12 24.73 49.45 78.12 10.23 185.73 41.86 19.97 63.34 95.93 53.32 41.61 45.85 3.95 42.44 125.72 64.48 51.39 73 Ix_AR1 ActiveIntronRegion 0 10.32 0.00 7.54 2.73 7.66 0.00 2.93 5.11 3.34 1.98 0.71 2.46 0.00 2.65 16.34 4.48 12.04 2.93 4.95 4.71 4.51 0.19 5.11 74 E13_Aa NovelBoundary 0 26.67 3.35 43.20 12.49 12.48 20.95 6.76 32.37 6.42 7.63 17.74 6.30 0.00 31.84 26.21 7.52 27.40 11.86 9.04 11.38 27.55 5.88 20.74 75 ER13a ExonRegion 0 39.80 27.61 140.92 66.95 22.23 7.60 10.53 56.28 57.20 19.98 158.43 26.85 15.96 59.48 132.15 71.30 46.57 40.89 13.16 39.35 87.17 48.85 48.21