Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NLGN4X Gene 0 13.29 70.33 63.09 146.00 64.29 64.44 43.67 90.98 85.13 139.95 14.95 0.33 0.03 0.21 0.08 0.02 0.05 117.55 33.39 80.88 3.33 15.80 14.04 2 381095 Transcript 0 0.72 17.92 12.10 30.10 10.93 40.38 33.21 21.90 23.75 53.42 2.54 0.00 0.00 0.09 0.00 0.00 0.00 45.00 10.27 34.22 0.00 1.66 0.54 3 381092 Transcript 0 0.12 0.45 0.32 0.68 0.44 0.10 0.81 0.72 0.98 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 1.89 0.00 0.00 0.00 4 275857 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 381093 Transcript 0 1.51 7.46 4.98 11.85 1.48 4.90 0.63 9.04 14.55 18.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.99 0.00 30.49 0.00 0.89 0.00 6 469740 Transcript 0 0.00 7.41 10.29 6.91 3.72 11.02 6.75 13.19 6.98 11.50 3.48 0.00 0.00 0.00 0.00 0.00 0.00 21.13 10.34 14.36 0.43 0.00 3.15 7 483337 Transcript 0 0.20 0.58 0.35 1.75 0.00 0.35 2.03 0.98 1.03 1.47 0.00 0.00 0.37 0.00 0.62 0.28 0.32 0.00 0.30 2.84 0.00 0.00 1.12 8 477079 Transcript 0 0.00 0.39 2.54 6.60 1.85 0.90 0.93 0.00 0.62 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.41 0.00 0.00 0.00 9 IG5_AR1 ActiveIntergenicRegion 0 2.82 11.26 17.42 18.37 13.62 4.17 5.43 9.67 5.46 13.43 1.15 0.00 0.00 0.00 0.00 0.00 0.00 3.59 4.57 10.09 0.11 0.00 0.00 10 ER1a ExonRegion 0 2.17 21.22 24.01 39.16 22.58 30.64 20.05 31.28 25.16 59.37 6.02 0.00 0.00 0.27 0.00 0.00 0.00 74.19 22.16 60.10 0.00 2.41 1.63 11 E1_Ab KnownBoundary 0 0.00 18.55 39.74 48.01 25.04 25.27 21.77 61.16 53.88 106.02 10.16 0.00 0.00 0.00 0.00 4.36 0.00 157.94 25.98 57.65 0.00 8.02 7.94 12 ER1b ExonRegion 0 0.00 16.85 22.39 48.75 22.67 45.70 30.13 43.75 31.43 95.26 5.38 0.00 0.00 0.00 0.00 0.00 0.00 81.45 12.35 54.54 0.00 1.63 6.67 13 E1_Da NovelBoundary 0 3.33 9.67 41.72 22.24 40.58 7.89 2.21 19.26 13.11 56.92 7.84 0.00 0.00 0.00 0.00 0.00 0.00 12.89 4.05 23.20 0.00 0.00 0.00 14 E1a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E1a_E6a KnownJunction 0 0.00 28.81 9.96 48.48 7.39 81.32 78.26 33.48 44.50 96.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58.95 8.66 40.91 0.00 2.57 0.00 16 I1 Intron 0 1.76 6.16 14.92 19.06 12.76 7.08 6.51 15.79 7.80 23.80 3.07 0.00 0.00 0.00 0.00 0.00 0.00 7.51 5.30 8.21 0.33 0.00 0.00 17 I1_AR1 ActiveIntronRegion 0 1.77 6.17 14.97 19.11 12.80 7.10 6.53 15.83 7.82 23.87 3.08 0.00 0.00 0.00 0.00 0.00 0.00 7.53 5.32 8.23 0.33 0.00 0.00 18 E2_Aa NovelBoundary 0 0.00 8.75 21.76 28.30 4.24 2.27 2.16 22.30 12.44 41.37 2.37 0.00 0.00 0.00 0.00 0.00 0.00 17.74 0.00 11.51 0.00 0.00 3.93 19 ER2a ExonRegion 0 0.00 5.47 11.11 10.30 5.20 3.53 1.23 7.41 7.62 13.49 2.49 0.00 0.00 0.00 0.00 0.00 0.00 9.01 4.69 10.88 0.00 1.27 0.00 20 E2_Da NovelBoundary 0 0.00 9.41 20.76 22.61 0.00 0.00 4.50 13.84 4.51 27.32 5.00 0.00 0.00 0.00 0.00 0.00 0.00 21.85 0.00 23.91 0.00 0.00 0.00 21 E2a_E6a KnownJunction 0 0.00 3.35 0.00 0.00 8.66 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.09 8.66 16.11 0.00 0.00 0.00 22 I2 Intron 0 0.86 3.89 13.33 6.94 1.40 2.87 3.07 7.02 6.72 17.43 0.78 0.00 0.00 0.00 0.00 0.00 0.00 15.12 4.80 7.15 0.77 1.09 1.87 23 I2_AR1 ActiveIntronRegion 0 0.86 3.90 13.36 6.96 1.40 2.88 3.08 7.03 6.74 17.47 0.79 0.00 0.00 0.00 0.00 0.00 0.00 15.16 4.81 7.17 0.77 1.09 1.88 24 E3_Aa NovelBoundary 0 0.00 0.00 19.25 12.49 0.00 0.00 0.00 10.76 2.55 14.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.67 4.80 5.69 0.00 0.00 0.00 25 ER3a ExonRegion 0 0.00 4.30 16.91 12.53 3.45 12.16 7.24 11.85 4.67 16.88 4.43 0.00 0.00 0.00 0.00 0.00 0.00 26.31 11.36 11.60 0.86 0.00 2.29 26 E3_Da NovelBoundary 0 0.00 0.00 25.49 13.05 4.33 2.33 6.36 6.16 3.39 28.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.07 0.00 0.00 0.00 0.00 0.00 27 E3a_E6a KnownJunction 0 0.00 10.52 3.67 1.30 3.99 9.88 6.27 14.54 9.29 6.12 2.53 0.00 0.00 0.00 0.00 0.00 0.00 15.96 9.32 17.13 0.00 0.00 4.01 28 I3_SR1 SilentIntronRegion 0 2.85 11.77 23.10 31.72 11.35 3.81 7.67 17.73 6.62 15.69 1.01 0.00 0.00 0.00 0.00 0.00 0.00 7.86 4.55 11.22 0.14 0.68 0.78 29 I3_AR2 ActiveIntronRegion 0 2.57 7.70 30.63 16.35 5.35 3.54 11.06 35.19 6.26 31.79 2.90 0.00 0.00 0.00 0.00 0.00 0.00 7.39 10.47 20.21 0.00 0.45 8.81 30 I3_AR3 ActiveIntronRegion 0 4.23 8.13 24.51 20.05 8.03 2.10 12.10 29.38 7.76 36.05 5.80 0.00 0.00 0.00 0.00 0.00 0.00 6.07 5.01 18.54 0.00 0.00 8.81 31 I3_AR4 ActiveIntronRegion 0 2.12 5.81 15.58 17.33 10.70 3.67 12.67 28.64 8.65 28.34 5.80 0.00 0.00 0.00 0.00 0.00 0.00 5.02 10.92 16.41 0.00 0.00 0.00 32 I3_AR5 ActiveIntronRegion 0 1.31 12.88 9.72 30.74 8.71 5.51 11.65 19.79 12.62 25.34 0.76 0.00 0.00 0.00 0.00 0.00 0.00 4.82 3.29 17.11 0.00 0.60 1.98 33 I3_AR6 ActiveIntronRegion 0 2.12 13.65 9.45 37.58 8.03 5.11 13.05 15.56 9.88 23.84 1.93 0.00 0.00 0.00 0.00 0.00 0.00 5.28 0.91 18.39 0.00 0.00 0.00 34 I3_AR7 ActiveIntronRegion 0 2.12 15.08 9.19 33.16 8.03 3.67 14.56 13.40 7.41 26.86 1.93 0.00 0.00 0.00 0.00 0.00 0.00 5.54 6.37 15.78 0.00 0.00 0.00 35 I3_AR8 ActiveIntronRegion 0 2.12 20.13 8.95 30.53 7.76 3.67 13.37 11.23 6.42 25.35 1.55 0.00 0.00 0.00 0.00 0.00 0.00 3.70 6.37 13.62 0.00 0.00 0.00 36 I3_AR9 ActiveIntronRegion 0 1.54 19.78 10.47 27.26 5.84 2.67 11.31 9.27 7.64 29.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.52 8.40 11.80 0.00 0.00 0.00 37 I3_AR11 ActiveIntronRegion 0 0.00 12.49 14.53 30.37 5.35 0.00 8.13 8.64 9.53 31.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 3.19 7.60 0.00 0.00 0.00 38 I3_SR2 SilentIntronRegion 0 0.00 16.10 20.32 31.52 9.53 1.55 15.59 11.20 9.33 25.07 1.63 0.00 0.00 0.00 0.00 0.00 0.00 7.56 2.58 15.07 0.00 0.00 2.48 39 I3_AR12 ActiveIntronRegion 0 0.21 6.62 15.15 22.95 3.12 3.10 8.69 12.88 8.79 15.37 0.77 0.00 0.00 0.32 0.00 0.00 0.00 5.18 7.11 11.14 0.44 0.62 2.04 40 I3_AR13 ActiveIntronRegion 0 1.39 4.90 11.35 19.29 9.47 2.69 6.73 18.83 9.56 17.60 1.00 0.00 0.00 0.00 0.00 0.00 0.00 7.36 2.16 8.18 0.00 0.47 1.00 41 ER4a ExonRegion 0 0.35 1.36 0.95 2.03 1.33 0.30 2.43 2.16 0.68 1.16 0.01 0.00 0.00 0.00 0.00 0.00 0.00 3.08 0.00 5.68 0.00 0.00 0.00 42 E4a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 E5_Aa NovelBoundary 0 4002.86 2714.12 5969.96 5828.50 2255.43 1738.49 2048.40 6735.53 6363.24 4828.70 1109.07 664.27 1053.18 573.43 919.71 2749.53 2067.60 8232.52 2320.35 2148.77 1208.43 907.91 2583.09 44 ER5a ExonRegion 0 0.40 1.17 0.70 3.49 0.00 0.70 4.05 1.96 2.06 2.94 0.00 0.00 0.74 0.00 1.24 0.57 0.63 0.00 0.61 5.69 0.00 0.00 2.24 45 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46 ER6a ExonRegion 0 3.14 24.55 37.05 66.57 18.11 45.89 23.70 69.95 77.58 148.66 23.28 0.00 0.00 0.24 0.00 0.00 0.00 230.17 40.56 118.39 7.61 11.05 23.36 47 E6_Da KnownBoundary 0 0.00 37.23 73.71 110.94 31.92 64.62 39.53 113.04 136.17 197.06 24.59 0.00 0.00 0.00 18.42 4.36 60.12 365.66 61.37 132.95 30.64 42.01 25.52 48 ER6b ExonRegion 0 2.26 36.20 45.27 81.42 24.30 46.42 31.17 67.22 76.35 158.01 19.46 0.00 0.00 0.49 0.00 0.00 0.00 207.62 51.26 127.80 5.59 15.32 19.15 49 E6_Db NovelBoundary 0 3.33 16.97 35.30 56.87 32.51 39.01 33.03 35.94 87.09 117.52 16.27 0.00 0.00 0.00 0.00 11.19 37.68 144.84 52.05 83.03 11.00 32.03 25.95 50 E6_Dc NovelBoundary 0 3.56 0.00 0.00 4.13 0.00 0.00 6.36 2.14 1.79 1.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.40 3.26 0.00 0.00 0.00 51 E6c_E7a KnownJunction 0 0.00 13.16 6.30 12.39 3.82 6.64 1.72 6.33 8.10 12.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.00 0.00 38.16 0.00 0.00 0.00 52 E6c_E8a KnownJunction 0 9.71 33.22 26.43 45.02 53.74 53.32 75.03 60.83 86.72 137.29 25.74 0.00 0.00 0.00 0.00 0.00 0.00 161.88 44.90 89.42 3.15 17.88 8.02 53 ER6c ExonRegion 0 6.95 37.77 32.38 65.81 51.99 51.74 52.86 60.00 90.08 155.24 28.03 0.00 0.00 0.00 0.00 0.00 0.00 186.09 51.19 121.58 6.61 16.07 11.96 54 I6_AR2 ActiveIntronRegion 0 4.69 6.06 33.47 55.86 13.52 1.30 32.49 38.06 5.35 26.04 0.46 0.00 0.00 0.00 0.00 0.00 0.00 8.98 6.70 11.39 0.00 1.00 1.96 55 ER7a ExonRegion 0 0.74 9.22 6.23 13.06 0.62 3.06 0.18 9.65 15.50 21.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24.45 0.00 33.30 0.00 0.28 0.00 56 E7a_E8a KnownJunction 0 3.78 0.00 2.42 10.09 0.00 5.00 0.00 11.13 20.05 22.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.51 0.00 20.01 0.00 2.39 0.00 57 ER8a ExonRegion 0 2.68 31.62 36.81 75.13 39.14 42.56 33.76 62.81 101.12 155.39 19.70 0.00 0.00 0.45 0.00 0.00 0.00 234.98 41.56 104.31 3.47 14.73 19.08 58 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59 I8_AR2 ActiveIntronRegion 0 9.98 23.82 41.32 88.78 24.65 4.36 15.69 36.61 13.78 20.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.96 10.55 14.14 0.00 0.00 0.00 60 I8_AR3 ActiveIntronRegion 0 20.11 20.51 76.48 141.29 43.03 0.31 33.87 46.81 14.82 29.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.19 30.14 0.00 0.00 0.00 61 I8_AR4 ActiveIntronRegion 0 16.27 21.95 71.04 145.42 28.59 1.21 12.97 45.74 20.86 24.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.86 3.32 19.44 0.00 0.00 0.00 62 I8_AR5 ActiveIntronRegion 0 6.46 16.34 26.92 63.84 19.33 3.22 15.20 10.49 8.65 8.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.97 1.37 0.81 0.00 0.00 0.00 63 I8_AR6 ActiveIntronRegion 0 3.87 10.24 40.44 74.28 15.17 2.54 4.14 47.77 22.11 14.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.82 12.20 5.56 0.00 0.05 2.84 64 I8_AR7 ActiveIntronRegion 0 5.46 26.01 79.33 108.03 18.31 4.54 16.10 72.78 25.42 24.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.67 8.21 20.16 0.23 2.08 2.47 65 I8_AR8 ActiveIntronRegion 0 24.87 22.78 70.28 110.73 48.03 11.83 24.89 70.43 23.78 28.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30.21 4.62 25.53 2.20 2.08 1.91 66 ER9a ExonRegion 0 1.16 18.70 27.29 46.10 16.59 38.90 20.59 51.36 90.32 119.63 18.24 0.00 0.00 0.00 0.00 0.00 0.00 252.33 35.95 76.85 7.72 12.00 16.09 67 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 68 ER10a ExonRegion 0 0.84 16.04 27.50 39.56 6.10 29.45 14.29 35.46 49.82 91.96 8.96 0.00 0.00 0.27 0.00 0.00 0.00 164.06 15.88 59.39 5.99 7.14 9.64 69 E10_Ab KnownBoundary 0 0.00 60.98 23.83 75.18 15.62 48.10 38.55 48.02 113.05 135.12 25.85 0.00 0.00 34.14 4.45 0.00 65.92 235.08 55.91 60.34 51.77 55.60 75.03 70 ER10b ExonRegion 0 3.38 41.54 31.89 74.14 23.49 44.45 24.55 60.92 85.19 125.12 19.01 0.55 0.00 0.00 0.00 0.00 0.00 194.66 29.81 87.03 4.91 14.31 18.03 71 E10a_E11a KnownJunction 0 3.78 101.96 53.07 123.76 41.26 101.31 45.71 115.79 152.95 180.30 22.43 0.00 0.00 0.00 0.00 0.00 0.00 296.76 26.82 123.81 5.87 14.08 32.01 72 E10a_E12a KnownJunction 0 0.00 0.00 6.92 18.18 4.33 2.61 2.12 0.00 1.79 1.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 73 ER11a ExonRegion 0 8.88 74.56 54.29 146.51 61.31 85.58 46.53 110.77 133.47 199.00 23.29 0.64 0.00 0.49 0.14 0.00 0.12 180.29 48.43 119.01 5.28 25.03 25.20 74 E11_Da KnownBoundary 0 14.15 166.68 88.64 211.83 29.20 93.70 54.72 133.45 150.95 246.08 12.95 0.00 0.00 2.77 6.30 0.00 64.24 60.98 28.89 62.83 5.87 95.83 28.43 75 ER11b ExonRegion 0 34.76 151.45 143.08 337.86 154.47 120.86 92.09 176.86 128.00 211.26 18.07 0.66 0.00 0.14 0.00 0.00 0.00 76.08 46.67 97.85 2.16 26.16 14.57 76 E11_Db KnownBoundary 0 17.63 91.63 74.60 191.42 58.57 70.19 56.17 104.08 46.87 88.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.56 19.01 50.30 0.00 7.59 4.35 77 ER11c ExonRegion 0 40.86 169.63 69.88 159.98 111.10 41.64 46.57 92.07 44.61 99.12 5.35 0.00 0.00 0.00 0.00 0.00 0.00 6.91 17.12 25.49 0.00 10.76 2.28 78 E11_Dc NovelBoundary 0 0.00 54.99 19.84 26.07 4.16 16.75 8.44 6.78 35.18 30.38 5.00 0.00 0.00 2.30 0.00 0.00 3.74 4.06 4.42 5.69 0.00 33.13 7.60 79 ER11d ExonRegion 0 0.00 3.73 2.31 2.65 2.82 9.17 1.32 0.96 1.58 4.01 1.61 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 1.65 0.00 0.00 0.00 80 ER12a ExonRegion 0 0.00 1.56 2.16 7.82 3.07 0.97 1.32 0.00 0.69 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.63 0.00 0.00 0.00 81 E12a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 82 ER13a ExonRegion 0 0.00 0.00 1.10 0.41 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00