Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SAT1 Gene 0 1374.26 86.07 436.47 369.44 655.54 324.94 272.66 424.54 321.21 226.38 316.57 431.88 436.00 581.48 931.88 400.48 475.25 20.97 11.12 11.29 128.02 953.95 628.35 2 379251 Transcript 0 64.24 2.37 40.18 20.38 63.01 25.98 18.33 41.56 44.90 16.07 21.03 32.26 43.45 56.01 61.85 32.01 53.25 1.60 1.68 2.76 10.03 59.23 60.25 3 379253 Transcript 0 368.58 17.13 148.89 207.48 258.05 109.68 104.26 152.55 133.23 100.56 103.16 251.61 264.45 301.86 223.50 136.67 136.84 3.01 2.24 3.56 30.14 433.04 203.89 4 379254 Transcript 0 0.00 0.00 2.84 0.00 0.00 0.00 1.85 0.00 4.69 0.00 0.00 0.00 0.00 0.00 5.69 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 379270 Transcript 0 346.74 59.36 334.67 169.39 149.58 346.99 191.56 208.27 146.72 102.37 254.14 257.71 182.70 413.03 670.20 270.95 327.40 28.02 4.09 7.41 129.75 597.91 345.14 6 489394 Transcript 0 37.34 2.63 27.47 10.72 26.66 2.56 15.41 19.92 35.01 19.07 28.95 56.42 54.38 74.11 131.41 59.39 59.56 2.28 4.80 2.81 2.66 24.68 6.57 7 342463 Transcript 0 17.76 1.93 59.56 44.82 7.47 7.50 4.53 36.71 30.96 26.45 4.69 0.00 0.00 3.45 5.44 5.01 5.49 3.29 0.00 0.00 0.91 17.96 5.01 8 463236 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 487713 Transcript 0 24.56 0.42 7.86 2.98 8.79 5.43 4.34 7.34 6.07 3.39 6.39 5.22 4.97 11.76 26.07 9.27 11.17 0.29 1.16 0.13 2.96 16.36 22.66 10 474223 Transcript 0 1701.19 68.57 280.72 344.10 625.30 251.34 235.89 314.45 245.79 188.17 188.70 424.01 345.20 402.93 616.57 256.42 324.20 10.87 3.52 7.26 75.18 626.90 520.64 11 462639 Transcript 1 599.26 11.14 63.34 28.74 152.40 21.64 42.03 60.09 43.90 27.60 26.37 52.96 13.71 33.87 103.90 28.73 56.30 2.46 0.00 1.21 5.07 78.13 49.60 12 ER1a ExonRegion 1 826.12 41.73 92.88 38.16 586.84 735.72 315.53 72.87 63.93 47.76 183.86 0.00 3.38 362.05 690.27 255.25 373.40 17.07 11.47 6.98 106.92 186.77 477.62 13 ER1b ExonRegion 1 1694.49 109.59 290.07 152.81 1060.79 1218.79 485.32 289.34 253.41 180.01 344.03 33.54 50.06 460.82 902.25 697.20 619.49 60.42 12.51 16.64 209.33 552.74 1494.33 14 E1_Ac KnownBoundary 1 541.58 59.40 123.09 84.90 168.42 219.87 104.00 177.60 132.15 105.70 90.08 87.78 172.23 88.76 279.62 526.53 162.41 34.61 9.13 8.31 47.51 237.28 1298.71 15 ER1c ExonRegion 1 277.82 18.59 184.06 110.01 113.32 118.20 61.69 203.23 178.57 126.24 234.69 65.09 115.19 228.54 433.56 279.28 472.90 18.64 15.26 7.35 174.09 408.92 506.49 16 E1_Ad KnownBoundary 1 439.26 29.73 309.89 161.55 172.84 63.43 60.15 291.71 275.63 185.75 593.47 66.77 92.20 414.03 654.06 189.52 1305.37 7.83 12.24 20.20 414.46 407.39 268.64 17 ER1d ExonRegion 0 408.14 37.04 524.83 322.48 204.33 105.95 100.07 432.24 376.29 283.93 488.06 394.47 261.00 803.80 1674.53 603.01 949.46 25.96 21.26 18.22 322.40 1180.57 1067.76 18 E1a_E2b KnownJunction 1 514.83 48.87 591.02 358.63 171.99 128.79 67.61 526.28 427.28 312.16 420.63 326.36 296.25 814.59 1924.60 1395.53 583.26 66.57 18.45 20.96 234.14 1284.07 2562.00 19 ER2a ExonRegion 0 24.56 0.42 7.86 2.98 8.79 5.43 4.34 7.34 6.07 3.39 6.39 5.22 4.97 11.76 26.07 9.27 11.17 0.29 1.16 0.13 2.96 16.36 22.66 20 E2_Ab KnownBoundary 0 81.57 0.00 17.42 6.53 50.85 2.16 17.40 12.49 17.25 7.01 11.42 6.30 0.00 19.66 18.17 9.74 26.27 0.00 0.00 0.00 2.72 18.61 43.88 21 E2a_E2e KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 ER2b ExonRegion 0 983.97 65.89 652.88 388.15 402.30 153.58 97.71 615.85 484.47 334.09 536.67 408.05 438.52 812.79 1499.95 1041.28 646.98 57.93 19.59 22.34 278.77 1181.88 2129.36 23 E2_Db KnownBoundary 0 74.24 0.00 58.42 23.07 96.43 18.17 8.30 54.38 50.43 10.50 6.63 35.71 21.91 39.97 55.38 38.54 41.80 0.00 0.00 0.00 8.77 58.05 61.29 24 E2b_E2c KnownJunction 0 1828.03 78.41 668.01 466.54 3751.78 1973.92 664.83 686.39 472.39 329.03 777.46 824.22 949.13 1299.32 1845.73 1386.47 1166.34 74.08 57.88 32.66 415.70 1893.52 2507.97 25 E2b_E3c KnownJunction 0 0.00 0.00 2.84 0.00 0.00 0.00 1.85 0.00 4.69 0.00 0.00 0.00 0.00 0.00 5.69 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 ER2c ExonRegion 0 1463.67 81.21 641.62 417.66 1899.69 931.27 333.13 661.11 505.68 330.79 668.41 614.23 694.28 1058.45 1479.08 1058.75 962.90 69.14 34.22 28.96 371.22 1486.49 2069.01 27 ER2d ExonRegion 0 64.24 2.37 40.18 20.38 63.01 25.98 18.33 41.56 44.90 16.07 21.03 32.26 43.45 56.01 61.85 32.01 53.25 1.60 1.68 2.76 10.03 59.23 60.25 28 E2_Ac KnownBoundary 0 70.23 3.09 55.00 33.40 27.93 10.28 29.15 63.25 49.77 17.27 45.59 44.71 33.93 92.35 85.17 42.64 82.09 2.57 4.61 0.00 8.03 72.07 95.78 29 ER2e ExonRegion 0 1003.59 118.17 810.19 495.93 1554.77 1486.95 693.37 689.42 542.93 364.04 723.91 660.90 608.35 1319.70 1565.45 888.09 1018.86 69.19 26.40 22.64 412.15 1598.01 1318.94 30 E2_Dc KnownBoundary 0 352.21 54.53 116.35 139.84 382.60 351.50 162.96 195.47 195.43 135.73 171.62 206.02 125.97 403.26 379.01 250.96 264.33 2.16 12.89 2.81 127.57 423.00 442.01 31 E2c_E2d KnownJunction 0 37.34 2.63 27.47 10.72 26.66 2.56 15.41 19.92 35.01 19.07 28.95 56.42 54.38 74.11 131.41 59.39 59.56 2.28 4.80 2.81 2.66 24.68 6.57 32 E2c_E3c KnownJunction 0 690.57 118.73 665.97 337.75 299.15 693.98 383.11 416.53 292.21 204.74 508.29 515.42 365.40 826.07 1338.03 541.91 654.79 56.04 8.19 14.83 259.09 1195.83 689.73 33 ER2f ExonRegion 0 338.11 28.56 97.83 111.04 213.76 145.91 95.11 164.44 176.87 109.50 130.47 277.18 265.84 367.27 266.98 177.18 209.98 2.73 5.79 2.13 98.82 356.19 342.59 34 E2_Dd KnownBoundary 1 536.39 25.85 93.17 110.41 219.95 104.26 83.34 149.71 163.60 103.23 99.18 326.36 562.95 377.30 269.86 353.84 215.52 8.00 0.00 7.93 65.67 393.36 355.11 35 E2d_E3d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER2g ExonRegion 0 704.59 23.47 139.38 169.65 224.68 106.59 63.12 228.80 241.56 139.05 163.92 365.59 324.39 535.27 400.57 232.44 281.39 3.82 4.53 7.09 89.81 530.34 312.38 37 E2_De KnownBoundary 0 788.44 27.30 95.03 167.14 257.73 68.26 88.15 165.32 210.53 134.18 185.05 354.57 195.44 365.18 226.22 209.43 328.28 4.27 9.04 5.62 52.51 527.89 348.62 38 ER2h ExonRegion 0 684.69 37.61 171.59 232.15 429.59 191.91 166.61 233.19 248.35 164.84 203.76 414.88 402.50 439.83 332.11 282.43 311.00 5.62 4.22 6.13 44.37 596.45 376.85 39 E2_Df KnownBoundary 1 854.00 39.66 269.77 384.90 613.50 248.89 244.66 304.32 305.44 197.06 212.11 493.06 629.34 485.08 371.10 200.20 376.72 2.03 4.71 5.94 59.31 742.82 294.67 40 ER2i ExonRegion 1 674.72 32.74 288.28 397.58 480.64 191.85 183.20 297.98 260.90 192.67 189.16 448.55 489.04 560.68 406.39 261.07 258.41 6.02 4.48 7.12 58.90 794.72 371.07 41 E2_Ad KnownBoundary 0 646.19 38.15 252.83 309.08 574.96 162.01 191.14 228.86 228.90 142.88 168.99 366.57 449.00 458.42 322.15 168.08 286.96 0.00 8.09 0.00 62.83 433.72 324.89 42 ER2j ExonRegion 1 529.71 35.68 206.64 233.15 374.12 174.04 144.55 228.31 217.49 142.82 157.49 585.17 437.03 485.13 386.66 221.02 292.95 4.20 9.19 3.53 70.92 435.93 316.36 43 E2_Ae KnownBoundary 1 658.12 57.95 151.68 183.96 293.38 193.47 159.25 193.21 161.51 106.35 127.30 570.04 487.79 438.11 362.57 257.62 232.82 7.34 4.24 8.69 56.59 494.46 269.06 44 ER2k ExonRegion 1 459.09 26.19 107.83 129.64 249.50 105.60 110.66 123.07 130.87 72.10 128.40 422.82 493.17 444.48 466.03 220.30 210.14 5.77 2.79 5.34 32.07 471.77 249.80 45 E2_Dg NovelBoundary 1 585.66 14.93 150.59 199.51 249.66 118.74 98.48 154.36 130.47 107.90 88.34 193.56 313.29 219.79 149.58 108.60 111.64 0.00 0.00 3.00 9.20 480.74 211.02 46 E2g_E3c KnownJunction 1 184.63 3.29 51.83 46.95 14.69 15.33 17.31 36.02 66.69 20.60 50.33 57.47 174.34 146.21 191.98 108.52 84.90 2.11 3.86 2.56 5.31 66.07 34.74 47 E2_Dh NovelBoundary 0 1345.20 59.66 163.68 220.22 541.09 193.13 182.92 231.45 148.23 113.71 183.26 183.51 274.66 212.67 239.94 170.72 259.19 6.01 4.24 0.00 57.95 386.75 245.42 48 ER2l ExonRegion 0 62.44 1.53 9.50 17.38 35.45 27.51 25.32 7.13 5.56 8.46 17.15 54.66 39.87 43.04 40.62 12.26 15.27 0.00 0.00 0.00 1.38 71.36 36.71 49 I2 Intron 0 683.65 34.25 82.39 110.67 381.34 138.68 145.15 101.10 92.11 69.51 108.71 268.39 293.16 279.58 252.35 129.41 153.67 2.34 2.53 3.38 41.99 338.97 256.64 50 I2_AR1 ActiveIntronRegion 0 687.83 34.46 82.89 111.36 383.66 139.55 146.05 101.73 92.67 69.94 109.34 270.03 295.00 281.25 253.90 130.21 154.61 2.36 2.55 3.40 42.24 341.01 258.23 51 E3_Aa NovelBoundary 1 1563.24 53.48 170.60 441.97 581.41 189.32 167.20 241.72 196.58 201.36 215.69 426.14 176.61 459.59 481.24 263.35 326.97 2.57 0.00 15.60 68.45 697.33 487.34 52 ER3a ExonRegion 0 1701.19 68.57 280.72 344.10 625.30 251.34 235.89 314.45 245.79 188.17 188.70 424.01 345.20 402.93 616.57 256.42 324.20 10.87 3.52 7.26 75.18 626.90 520.64 53 E3_Ab KnownBoundary 0 2596.98 91.56 321.93 340.05 920.29 329.75 321.50 393.00 291.75 179.81 188.78 359.52 288.13 352.41 713.64 328.20 377.47 4.60 0.00 8.25 90.38 622.56 514.14 54 ER3b ExonRegion 0 2461.94 69.32 362.67 382.87 848.21 354.17 326.67 401.69 334.64 232.25 210.29 326.94 356.86 460.96 737.05 263.73 356.30 11.93 6.79 5.98 82.15 633.18 555.03 55 E3_Ac KnownBoundary 0 2261.22 70.78 367.55 423.36 688.46 306.41 352.24 341.41 326.82 234.26 140.51 348.41 317.51 444.88 838.99 250.96 263.11 14.47 12.14 3.26 56.34 641.05 491.69 56 E3_Ad KnownBoundary 0 4914.95 257.13 936.54 608.48 1371.99 776.14 634.49 796.30 635.24 337.71 794.10 961.21 1415.17 1471.67 2795.24 991.45 1311.45 49.62 49.04 20.90 310.68 2122.23 1548.74 57 ER3c ExonRegion 0 3623.04 214.65 1012.33 761.48 1126.67 850.50 623.81 842.29 720.88 438.95 797.49 990.10 1085.66 1433.65 2406.24 1028.25 1267.09 55.94 40.42 19.37 322.73 2126.91 1516.02 58 ER3d ExonRegion 0 3979.79 231.09 971.16 721.23 1209.47 564.73 579.97 887.18 649.24 403.11 780.41 860.90 1052.52 1475.49 2141.53 903.65 1177.78 47.78 41.28 19.24 355.44 1802.04 1254.07 59 E3_Da KnownBoundary 0 614.33 8.95 76.08 30.80 139.30 16.47 58.74 87.78 49.31 23.85 17.85 61.97 12.50 42.56 116.32 24.69 46.47 0.00 0.00 0.00 12.11 68.15 66.24 60 E3a_E3e KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61 E3a_E3f KnownJunction 0 3316.22 220.29 905.70 698.51 1591.09 626.63 834.90 774.78 517.91 351.35 781.46 898.04 886.79 1399.56 2009.65 907.28 862.93 53.47 33.13 25.38 342.56 1637.14 1168.79 62 ER3e ExonRegion 0 599.26 11.14 63.34 28.74 152.40 21.64 42.03 60.09 43.90 27.60 26.37 52.96 13.71 33.87 103.90 28.73 56.30 2.46 0.00 1.21 5.07 78.13 49.60 63 E3_Ae KnownBoundary 0 221.89 3.03 36.04 11.05 57.64 2.27 16.12 25.79 24.59 14.64 12.69 0.00 0.00 9.42 36.10 11.36 19.45 0.00 0.00 0.00 0.00 38.45 34.49 64 E3_Af KnownBoundary 0 248.19 5.99 22.62 18.28 114.86 12.72 23.10 10.31 6.60 4.11 2.42 19.81 6.66 2.24 21.14 25.81 29.73 0.00 0.00 0.00 0.00 19.53 11.61 65 ER3f ExonRegion 0 3409.71 215.56 1008.48 785.02 1565.31 612.49 712.29 846.94 631.14 399.12 811.82 939.49 895.80 1440.59 2144.03 933.25 940.76 64.67 35.04 25.53 330.56 1781.41 1192.28 66 ER3g ExonRegion 0 3118.32 225.57 1047.91 785.06 1789.67 590.25 733.84 887.60 674.71 419.57 817.18 950.86 819.70 1460.08 2317.01 1090.77 931.84 70.77 28.91 28.62 296.95 2080.29 1420.75 67 E3_Db NovelBoundary 0 767.40 13.22 61.26 37.69 174.79 13.00 47.83 65.31 37.99 18.32 35.27 18.16 6.17 29.31 93.45 8.63 29.92 0.00 0.00 3.26 0.00 54.50 70.17 68 E3b_E4a KnownJunction 0 3704.14 268.90 879.48 619.44 2157.05 597.33 843.55 761.96 598.98 346.73 811.78 889.49 654.66 1537.94 2719.71 1179.69 1010.56 59.86 37.18 27.48 300.79 2502.25 1589.55 69 I3 Intron 0 276.32 7.48 22.35 18.24 126.66 12.72 29.17 33.63 12.78 18.17 14.98 19.85 15.42 20.11 58.49 12.15 17.51 1.88 1.30 0.00 1.80 40.80 27.56 70 I3_AR1 ActiveIntronRegion 0 280.65 7.59 22.70 18.53 128.65 12.93 29.61 34.15 12.96 18.46 15.21 20.17 15.67 20.44 59.39 12.35 17.79 1.91 1.32 0.00 1.83 41.45 27.98 71 E4_Aa NovelBoundary 0 633.30 12.17 80.04 46.01 244.99 16.64 53.97 61.08 50.23 26.94 43.85 11.70 18.83 29.84 117.31 3.50 49.37 1.70 0.00 2.56 7.85 49.97 99.11 72 E4a_E4b KnownJunction 0 53.27 5.79 178.67 134.45 22.41 22.49 13.60 110.12 92.88 79.35 14.06 0.00 0.00 10.36 16.32 15.04 16.46 9.87 0.00 0.00 2.72 53.89 15.02 73 ER4a ExonRegion 0 2887.88 231.32 1058.90 763.42 1753.55 474.86 638.22 921.27 696.05 449.70 802.44 714.15 747.83 1480.14 2516.40 1121.09 1072.46 74.46 33.45 24.79 288.25 2369.59 1429.41 74 E4_Ac KnownBoundary 0 3595.97 247.52 1162.76 776.79 1604.58 494.49 613.16 1064.31 700.46 516.29 861.27 799.16 1247.16 1398.09 2484.96 1080.14 1117.62 64.13 39.72 13.61 334.22 2309.36 1228.03 75 ER4b ExonRegion 0 2844.60 226.41 1061.17 729.14 1607.23 426.05 582.98 936.82 691.66 466.03 835.01 655.19 822.32 1409.19 2552.14 1064.02 1094.80 72.06 35.04 17.73 313.66 2269.65 1232.41 76 ER4c ExonRegion 0 2670.55 217.47 1069.32 703.57 1430.74 420.16 516.19 990.40 687.31 488.38 839.33 668.01 953.46 1393.40 2442.17 1041.99 1116.67 67.06 32.04 13.77 320.83 2262.70 1178.46 77 ER4d ExonRegion 0 2622.36 223.02 1068.52 685.08 1426.17 461.51 493.40 1005.38 683.02 493.55 829.21 717.25 923.94 1266.27 2253.31 999.63 1121.20 61.59 30.79 17.73 315.87 2116.16 1205.98 78 ER4e ExonRegion 0 2589.93 253.64 1067.38 820.03 1398.93 548.33 607.08 1024.17 684.03 474.30 791.03 855.88 910.05 1436.23 2509.06 950.93 1149.53 54.23 36.57 27.05 305.83 2194.95 1219.39 79 E4_Dc KnownBoundary 0 3334.00 359.02 1329.08 1125.63 1491.26 571.94 770.37 1113.35 746.00 466.43 644.48 847.78 747.35 1393.26 2891.90 850.63 1306.22 52.60 33.98 32.47 315.13 1936.26 1160.17 80 ER4f ExonRegion 0 2897.84 211.46 1406.95 1121.67 1419.16 517.59 644.71 1196.83 769.24 583.57 728.00 950.00 1034.45 1165.44 2510.34 822.29 1055.41 42.55 24.23 30.88 216.92 2576.41 1079.45 81 E4_Dd KnownBoundary 0 3041.21 268.50 1143.72 917.33 1045.33 298.24 402.01 965.16 643.57 445.40 407.16 1021.08 765.37 665.61 2143.90 625.73 424.78 32.46 13.46 36.69 79.32 1830.70 779.96 82 ER4g ExonRegion 0 1729.76 186.49 706.87 511.91 669.43 205.96 352.88 778.22 474.22 370.53 415.02 530.54 602.65 482.62 1269.47 315.18 385.57 15.83 8.56 13.76 69.35 2210.12 428.70 83 E4_De KnownBoundary 0 771.69 123.14 196.39 132.12 208.74 44.58 93.71 259.05 149.88 112.58 114.77 173.76 271.57 121.31 236.85 35.38 150.63 0.00 0.00 8.50 20.20 489.19 62.91 84 E4_Df KnownBoundary 0 257.82 32.30 112.27 108.48 55.26 11.13 35.64 120.31 100.87 59.63 80.28 119.59 144.15 44.38 142.41 38.28 52.83 2.57 0.00 2.75 5.56 338.99 33.89 85 ER4h ExonRegion 1 920.16 125.57 320.13 252.82 232.79 66.93 116.84 421.74 270.18 187.52 209.72 423.21 609.70 255.39 691.22 89.91 212.08 1.85 0.00 8.51 32.50 854.24 106.45 86 ER4i ExonRegion 1 644.88 67.02 215.68 177.89 174.42 72.88 77.02 215.42 150.95 102.32 108.36 275.08 451.11 156.85 471.83 69.31 91.10 2.27 0.00 4.83 17.27 519.98 113.71 87 ER4j ExonRegion 0 2.91 0.00 3.37 1.02 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 2.36 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.55 88 IG50_AR1 ActiveIntergenicRegion 0 11.74 0.00 8.58 5.45 13.38 0.00 5.30 8.80 3.82 0.63 3.87 17.32 0.00 0.00 5.80 5.94 0.00 0.00 0.00 0.19 0.00 3.22 2.94