Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 HDHD1A Gene 0 37.83 12.08 56.48 45.55 64.93 20.08 35.33 82.01 36.36 45.38 188.00 150.24 160.67 68.47 79.83 50.15 60.60 19.17 14.73 42.22 29.23 23.26 14.61 2 412827 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 381077 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 498474 Transcript 0 1.27 0.67 1.67 1.57 1.68 0.40 2.41 2.71 0.99 0.84 1.07 1.57 6.23 1.74 1.79 2.62 3.04 1.22 1.76 2.45 1.70 0.23 0.97 5 424830 Transcript 0 0.00 0.00 0.86 0.47 0.06 0.00 0.91 0.67 0.00 1.43 5.18 3.79 0.95 3.19 2.72 0.00 4.02 0.00 0.74 0.04 0.00 0.00 0.00 6 486446 Transcript 0 0.29 0.00 2.48 0.56 1.44 0.74 0.36 4.15 2.31 1.80 2.06 2.41 2.20 1.48 5.41 1.88 2.19 3.47 0.43 2.58 1.49 0.56 1.86 7 IG12_AR5 ActiveIntergenicRegion 0 0.84 1.61 2.17 4.00 1.06 9.24 1.57 5.09 14.87 7.33 81.50 13.69 7.27 19.97 7.89 13.96 10.44 18.62 2.52 20.91 34.39 13.11 6.97 8 IG12_AR3 ActiveIntergenicRegion 0 1.19 0.00 0.00 0.30 0.56 0.00 1.98 0.71 0.92 1.02 9.48 3.58 1.16 0.40 0.31 0.44 0.49 0.00 0.95 2.08 0.99 0.62 0.88 9 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER1b ExonRegion 0 4.67 2.63 4.54 2.82 7.20 8.76 12.10 7.48 2.19 2.35 18.53 3.14 1.13 7.92 7.30 9.17 8.42 5.45 3.73 14.38 3.65 3.02 1.42 11 E1_Ac KnownBoundary 0 0.00 3.35 0.00 2.06 4.16 13.46 4.42 2.55 0.00 1.58 7.21 5.40 5.84 7.36 0.00 7.01 0.00 2.49 0.00 6.20 0.00 3.12 0.00 12 E1_Ad KnownBoundary 1 101.57 37.03 27.35 25.47 128.01 91.37 157.57 62.72 30.09 47.06 257.96 0.00 6.49 50.21 131.28 168.08 123.61 57.37 56.66 148.93 80.74 40.84 43.54 13 ER1c ExonRegion 1 53.30 25.14 21.72 18.58 88.54 72.02 100.74 49.03 22.57 37.95 174.14 0.00 11.51 52.41 101.81 120.51 93.03 39.14 35.33 108.90 59.50 32.96 34.44 14 ER1d ExonRegion 1 42.05 18.78 23.85 22.56 59.49 56.97 64.72 51.48 24.60 45.26 118.36 5.84 14.46 37.19 51.45 104.17 69.04 41.05 34.40 71.06 44.40 23.44 33.09 15 E1_Da NovelBoundary 0 0.00 0.00 2.90 1.27 0.00 5.17 3.80 0.00 9.06 14.26 40.85 5.85 0.00 17.25 10.75 0.00 12.90 22.55 0.00 8.63 46.95 13.41 0.00 16 E1a_E2a KnownJunction 0 0.00 0.00 1.69 1.40 0.00 0.00 2.03 0.00 0.00 1.29 0.00 5.85 0.00 0.00 0.00 0.00 4.49 0.00 0.00 0.00 0.00 0.00 0.00 17 E1a_E3a KnownJunction 0 11.78 0.00 12.36 12.49 15.20 5.51 1.81 7.52 7.06 13.86 11.58 17.41 19.15 18.89 0.00 22.90 13.46 3.73 4.71 12.72 3.15 2.82 3.67 18 I1_AR1 ActiveIntronRegion 0 0.32 0.00 3.73 0.00 0.00 3.13 0.42 0.00 1.18 1.64 9.23 3.43 0.35 4.95 0.38 3.25 6.23 4.21 1.02 8.68 17.03 5.35 0.00 19 I1_AR2 ActiveIntronRegion 0 12.24 3.57 13.81 13.39 12.12 0.74 4.24 4.47 1.58 3.19 8.78 12.04 3.24 1.59 8.26 5.02 1.99 4.35 5.57 3.70 0.29 0.84 0.40 20 ER2a ExonRegion 0 0.00 0.00 0.89 0.00 0.19 0.00 0.69 0.28 0.00 0.68 6.05 5.52 2.85 2.80 3.70 0.00 3.54 0.00 2.22 0.12 0.00 0.00 0.00 21 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.73 0.00 2.31 9.48 0.00 0.00 6.77 4.45 0.00 4.02 0.00 0.00 0.00 0.00 0.00 0.00 22 ER3a ExonRegion 1 3.88 1.05 17.93 10.25 9.56 4.14 3.29 27.46 9.70 24.13 124.85 73.60 80.77 18.38 15.04 17.06 51.59 4.52 12.51 23.01 28.85 4.67 5.82 23 E3_Ab KnownBoundary 1 7.26 3.29 21.44 9.22 3.40 8.06 6.01 32.00 13.92 28.12 277.39 165.65 139.76 34.20 47.72 22.73 119.49 4.35 18.17 41.87 51.71 8.51 4.35 24 ER3b ExonRegion 1 11.93 4.86 43.53 26.99 9.22 4.23 10.37 74.42 24.74 60.63 472.49 147.44 97.84 48.18 42.63 33.19 131.21 11.55 37.43 85.40 85.58 18.69 13.30 25 E3_Da KnownBoundary 1 20.15 3.29 54.88 39.06 15.79 4.88 11.53 91.27 31.22 69.22 513.24 116.74 53.41 66.98 51.42 65.11 122.11 19.65 59.20 138.13 85.19 33.80 32.35 26 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 ER3c ExonRegion 0 10.30 6.35 53.89 38.76 47.58 17.49 15.72 90.34 45.04 60.31 242.71 154.79 118.56 86.72 93.42 137.32 93.70 62.35 35.63 81.87 39.72 38.10 36.31 28 E3b_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 E3b_E5a KnownJunction 1 10.67 2.50 60.44 38.16 209.51 49.52 60.72 113.49 52.20 73.49 350.67 150.80 85.06 84.47 61.56 55.80 151.38 37.72 9.51 79.51 50.29 42.01 19.38 30 E3b_E7a NovelJunction 0 0.00 0.00 9.31 2.06 4.33 0.00 5.92 0.00 4.57 1.67 4.53 18.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 ER4a ExonRegion 0 1.48 0.00 3.48 0.42 0.71 0.00 1.97 0.75 2.59 0.52 1.14 2.11 8.22 2.33 1.20 3.59 1.16 3.93 1.25 5.27 1.73 0.82 0.58 32 E4_Da KnownBoundary 0 3.78 0.00 1.51 0.00 3.65 0.00 5.61 4.07 3.21 1.67 0.00 0.00 0.00 0.00 0.00 0.00 7.48 0.00 0.00 8.95 0.00 0.00 0.00 33 E4a_E5a KnownJunction 0 0.00 0.00 3.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 ER4b ExonRegion 0 1.27 0.67 1.67 1.57 1.68 0.40 2.41 2.71 0.99 0.84 1.07 1.57 6.23 1.74 1.79 2.62 3.04 1.22 1.76 2.45 1.70 0.23 0.97 35 ER5a ExonRegion 0 27.67 13.03 64.18 46.68 48.90 35.27 28.49 90.70 55.31 51.78 326.43 173.20 147.80 106.73 92.89 90.93 125.00 46.09 20.54 72.05 74.49 34.24 24.53 36 E5a_E6a KnownJunction 0 0.00 0.00 1.83 1.53 0.00 0.00 0.00 1.81 2.55 1.29 2.58 0.00 0.00 0.00 13.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.41 37 E5a_E7a KnownJunction 1 32.82 9.27 65.05 36.96 47.54 15.39 10.73 84.04 36.14 27.26 245.17 143.45 77.11 109.48 108.66 124.58 54.70 27.94 28.05 41.10 60.97 14.39 35.77 38 I5_AR2 ActiveIntronRegion 0 27.38 4.56 7.91 9.24 7.76 2.00 7.55 9.07 4.30 4.26 3.07 11.04 14.53 1.62 4.20 4.63 4.32 5.50 1.99 6.83 1.92 1.69 2.84 39 I5_SR3 SilentIntronRegion 0 68.91 6.53 12.28 11.64 8.60 1.79 5.32 7.04 5.44 7.90 3.46 6.76 17.13 2.95 5.37 5.79 5.88 7.40 5.71 12.13 3.87 0.27 2.21 40 I5_AR3 ActiveIntronRegion 0 12.62 3.15 7.87 6.51 5.44 2.45 5.05 5.38 2.74 5.99 1.11 6.50 6.98 2.20 6.82 3.80 3.19 7.99 2.34 5.63 3.70 0.24 0.76 41 E6_Aa NovelBoundary 0 20.60 2.83 3.19 1.37 0.00 0.00 0.00 8.67 1.39 1.67 4.79 0.00 22.08 2.41 0.00 7.60 7.67 20.56 4.80 9.78 0.00 0.00 0.00 42 ER6a ExonRegion 0 0.86 0.00 1.95 0.16 4.33 2.23 1.07 10.65 4.37 4.12 3.61 7.22 6.59 4.45 2.76 2.41 6.58 10.40 1.29 7.73 4.46 1.69 2.17 43 ER7a ExonRegion 0 66.20 19.97 93.02 76.86 111.85 29.25 58.81 133.34 56.43 71.58 278.57 249.15 274.79 106.47 129.95 65.65 82.68 21.37 19.02 56.53 36.77 35.35 19.45