Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ACOT9 Gene 0 61.57 36.07 76.74 32.92 29.94 24.39 25.37 26.45 29.08 22.39 63.18 55.30 57.53 82.90 92.47 74.01 58.55 36.33 26.75 35.42 49.41 74.50 58.77 2 379295 Transcript 0 1.22 0.11 1.37 1.53 0.58 0.25 0.37 0.84 0.24 0.21 0.63 2.29 1.78 2.03 3.56 5.10 1.19 0.16 0.00 0.09 0.10 0.15 0.73 3 494361 Transcript 0 1.97 2.12 1.13 0.06 1.07 1.80 0.99 0.48 0.89 1.20 2.41 0.17 0.00 1.15 1.79 2.28 2.54 0.86 2.34 0.61 1.67 2.06 4.59 4 336430 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 379303 Transcript 0 29.03 11.54 36.27 14.02 30.30 13.22 10.08 13.65 16.92 8.98 69.63 49.21 91.01 97.37 119.73 76.71 67.59 13.37 8.14 10.67 43.11 86.37 80.12 6 492081 Transcript 0 8.04 3.09 10.50 6.31 0.00 0.00 0.00 1.21 2.03 1.32 9.03 2.93 3.00 10.89 5.44 7.39 2.10 0.91 0.00 1.47 4.57 1.22 8.19 7 473710 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 449612 Transcript 0 26.86 10.58 19.14 7.69 11.50 13.71 6.58 10.54 6.18 3.01 10.26 36.72 28.92 37.77 36.57 30.58 12.68 8.31 9.81 4.76 6.86 53.93 35.78 9 379297 Transcript 0 95.83 33.22 49.73 23.06 29.80 22.42 29.62 21.06 19.80 13.65 33.11 57.22 50.31 60.78 78.65 68.60 39.14 27.76 20.48 26.89 31.22 53.25 57.12 10 ER1a ExonRegion 0 1.68 0.11 1.38 1.92 1.03 1.51 0.51 0.95 0.81 0.09 0.80 5.34 2.97 4.73 8.08 6.96 1.25 0.30 0.00 0.47 0.60 0.92 1.29 11 E1a_E2a KnownJunction 0 3.78 0.00 3.52 4.03 0.00 0.00 0.00 2.22 0.00 0.00 2.68 0.00 0.00 2.30 4.45 12.48 3.46 0.00 0.00 0.00 0.00 0.00 0.00 12 ER2a ExonRegion 0 1.86 0.00 3.35 2.66 0.93 0.00 0.92 1.17 0.64 1.15 0.32 7.38 5.69 4.06 6.12 4.52 2.44 0.65 0.00 0.00 0.00 0.00 3.08 13 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER3a ExonRegion 0 0.00 0.57 0.00 0.60 1.49 0.00 0.76 0.72 0.00 0.03 0.00 0.99 2.02 1.11 2.73 6.63 0.00 0.00 0.00 0.05 0.00 0.01 0.00 15 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 ER4a ExonRegion 0 5.79 3.66 3.10 0.18 0.54 2.45 1.94 0.81 1.73 2.45 7.22 0.00 0.00 2.92 4.06 5.94 6.82 2.59 7.01 1.84 5.00 5.42 9.40 17 E4_Ad KnownBoundary 1 151.14 47.49 32.67 14.48 30.73 40.83 28.66 6.16 16.46 16.31 107.24 0.00 0.00 131.20 128.44 147.48 164.84 48.38 46.78 67.88 78.15 40.05 96.72 18 ER4b ExonRegion 0 19.05 14.24 12.25 1.36 2.68 12.84 6.62 1.73 4.94 8.03 19.33 0.00 0.00 12.99 11.61 32.69 31.91 11.09 15.93 4.26 28.65 10.42 29.37 19 ER4c ExonRegion 1 67.45 24.49 23.50 6.34 17.92 25.35 15.89 4.66 11.22 11.07 75.80 0.00 0.00 67.08 73.41 99.11 107.06 36.87 29.22 39.69 60.27 23.46 64.86 20 ER4d ExonRegion 1 65.04 33.86 35.98 8.44 23.82 21.14 17.30 12.20 15.01 8.44 87.04 6.27 11.71 67.58 65.59 87.64 106.53 55.33 22.22 38.37 80.80 33.72 74.80 21 E4a_E5a KnownJunction 1 41.49 13.88 54.32 2.86 0.00 2.44 1.90 8.67 17.42 18.80 77.44 12.15 25.81 31.08 44.87 28.62 113.70 15.79 8.00 20.52 82.91 9.61 18.69 22 E4a_E7a KnownJunction 0 5.78 0.00 2.96 1.83 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 0.00 0.00 23 E5_Aa NovelBoundary 0 0.00 6.12 14.16 4.73 19.78 0.00 8.79 0.00 4.72 0.00 4.69 18.31 0.00 2.94 13.35 0.00 0.00 2.11 0.00 2.94 0.00 6.25 7.94 24 ER5a ExonRegion 1 33.04 28.26 62.97 12.38 10.32 8.50 18.35 26.00 24.55 18.54 190.07 57.87 41.59 145.89 142.16 117.85 197.08 56.22 24.31 72.41 142.95 96.88 96.04 25 E5_Da KnownBoundary 0 0.00 6.71 9.34 1.96 8.32 5.79 3.89 1.77 3.24 1.67 0.00 0.00 0.00 2.30 5.69 7.69 8.42 0.00 0.00 0.00 0.00 2.63 7.94 26 E5a_E6a KnownJunction 0 34.67 0.00 15.46 6.03 20.97 8.69 1.85 11.95 11.14 0.00 80.86 60.77 105.51 127.67 148.09 114.59 83.68 3.73 0.00 0.00 43.18 122.96 87.92 27 E5a_E7a KnownJunction 0 3.48 39.40 57.74 12.02 0.00 8.40 23.05 16.22 17.36 13.00 5.00 18.16 6.82 11.36 29.67 4.36 9.26 82.66 4.80 78.11 14.39 11.63 36.62 28 ER5b ExonRegion 0 0.13 2.71 0.30 0.00 2.68 2.95 1.04 0.63 0.94 1.15 0.00 0.52 0.00 0.54 1.32 0.90 0.80 0.00 0.00 0.00 0.00 0.76 4.36 29 E5b_E7b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 E6a_E7a KnownJunction 0 16.30 0.00 20.61 0.00 39.73 8.69 3.89 2.55 6.42 3.01 86.39 54.77 111.68 114.19 151.43 60.84 71.15 2.57 0.00 0.00 55.29 75.19 89.46 31 ER6a ExonRegion 0 25.16 0.08 23.87 4.29 32.01 10.32 1.96 10.56 12.49 3.23 91.92 54.68 112.91 112.12 141.62 92.69 90.10 4.04 0.00 0.39 47.09 106.80 96.04 32 E7_Aa NovelBoundary 0 62.90 0.00 2.69 14.38 19.95 5.34 6.67 2.01 3.44 0.00 0.00 12.45 6.66 2.12 10.75 0.00 7.95 0.00 0.00 0.00 2.97 7.84 11.61 33 E7_Ab NovelBoundary 0 41.86 15.06 58.10 7.69 16.81 20.10 20.58 9.49 7.81 7.31 31.69 17.41 53.89 37.44 23.73 32.81 52.08 22.59 14.68 22.56 42.44 36.99 13.06 34 ER7a ExonRegion 0 42.63 36.60 99.61 18.89 43.19 38.77 26.86 29.14 32.11 19.33 104.10 83.50 156.78 125.06 157.91 91.29 112.23 82.09 17.29 69.91 76.82 98.22 107.40 35 ER7b ExonRegion 0 59.26 35.44 93.48 18.59 45.30 45.84 32.25 24.45 28.32 19.66 132.27 109.47 126.30 120.53 160.40 95.96 125.43 86.32 20.25 65.20 90.82 108.64 92.71 36 E7a_E8a KnownJunction 0 117.58 24.01 91.69 29.80 98.30 42.59 49.95 25.75 28.39 26.19 188.36 120.94 78.08 138.50 211.51 138.51 154.37 68.19 40.57 61.94 104.40 137.29 75.63 37 ER7c ExonRegion 0 84.83 27.82 102.20 26.22 64.97 48.27 36.86 22.88 26.53 25.60 161.82 112.05 97.55 125.90 177.44 120.91 142.99 75.98 35.04 56.26 106.13 119.84 74.24 38 ER8a ExonRegion 0 85.45 70.43 145.03 57.62 61.51 40.76 38.10 42.05 48.13 41.58 212.98 184.52 162.15 205.93 235.24 142.78 167.01 54.77 50.63 71.59 108.36 228.89 101.44 39 E8a_E9a KnownJunction 0 182.18 59.00 145.18 65.19 127.59 81.20 52.60 45.18 48.47 42.52 228.22 236.03 122.56 251.87 232.90 141.24 189.15 60.85 12.99 83.16 93.96 240.22 127.62 40 ER9a ExonRegion 0 134.45 73.21 177.26 67.61 96.47 71.90 55.36 45.76 53.50 50.40 245.12 191.75 138.23 229.51 230.50 192.95 189.28 70.94 41.07 77.72 106.18 254.68 139.80 41 E9a_E10a KnownJunction 0 159.81 105.38 156.71 56.24 81.32 73.42 87.93 39.39 49.94 42.44 234.01 212.02 188.62 242.10 286.67 238.83 188.78 56.25 78.68 90.95 104.65 276.47 138.20 42 E9a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 E10_Ab NovelBoundary 0 41.49 44.01 95.44 49.41 50.08 20.27 37.36 20.21 36.05 24.85 104.34 122.29 68.18 127.73 107.92 108.01 70.41 42.32 42.64 52.99 80.25 109.67 57.36 44 ER10a ExonRegion 0 102.65 79.65 184.93 66.67 75.37 57.15 65.32 43.21 55.37 46.07 228.57 196.27 163.76 254.85 242.50 213.50 170.55 74.37 61.05 84.22 125.06 248.11 135.58 45 ER10b ExonRegion 0 108.59 69.68 164.01 53.06 83.32 59.90 56.88 45.64 46.78 35.11 176.78 265.48 257.63 283.61 249.83 191.12 193.38 63.13 60.65 96.42 134.43 208.53 161.03 46 E10a_E11a KnownJunction 0 116.24 99.92 155.55 48.88 102.38 42.65 48.76 52.70 37.73 36.21 170.83 235.58 272.22 272.35 217.81 191.32 176.06 53.89 60.14 116.78 96.31 166.80 141.11 47 ER11a ExonRegion 0 95.53 62.20 142.28 50.39 69.34 39.73 35.44 48.50 48.93 43.49 172.14 238.16 221.42 267.03 255.48 173.81 171.46 53.25 43.83 71.56 121.95 192.40 135.71 48 E11a_E12a KnownJunction 0 94.61 55.52 144.88 43.32 54.16 52.58 35.99 48.22 44.94 32.77 184.89 212.77 184.57 268.41 243.03 204.05 191.96 68.15 51.67 54.71 150.06 214.62 170.56 49 E11a_E13a KnownJunction 0 10.30 6.18 18.04 10.79 0.00 0.00 0.00 2.42 4.05 2.63 15.37 5.85 6.01 21.78 10.88 14.78 4.21 1.82 0.00 2.94 5.99 2.45 16.39 50 E12_Aa NovelBoundary 1 0.00 3.09 14.75 0.00 3.31 0.00 4.20 0.00 3.15 1.26 4.69 6.30 35.71 0.00 0.00 0.00 8.51 2.40 0.00 2.49 0.00 3.12 11.18 51 ER12a ExonRegion 0 64.32 63.21 143.02 40.15 41.47 55.86 42.87 41.34 48.00 44.20 180.31 216.06 165.17 225.31 192.11 163.35 171.16 51.36 38.01 66.04 142.94 167.72 125.36 52 E12_Da NovelBoundary 0 3.70 0.00 10.64 8.29 3.14 0.00 5.08 18.77 8.19 1.40 2.26 0.00 12.99 12.89 9.15 3.76 4.39 4.02 14.40 12.72 0.00 3.06 0.00 53 E12a_E13a KnownJunction 0 95.20 53.48 121.23 33.03 29.97 38.95 32.46 41.03 43.87 51.68 115.08 171.36 100.81 214.38 177.39 126.63 156.80 43.77 43.86 53.63 161.36 173.47 125.23 54 E13_Aa NovelBoundary 0 41.04 2.43 7.24 10.06 4.16 12.27 8.21 5.75 3.44 0.00 2.11 0.00 13.64 7.24 4.45 4.19 3.46 2.11 0.00 0.00 2.29 15.31 11.52 55 ER13a ExonRegion 0 120.92 86.19 120.63 50.01 63.55 77.88 69.00 48.68 61.28 55.37 168.76 193.81 268.57 280.02 256.85 197.38 155.72 42.88 39.68 54.29 127.17 159.14 135.26 56 E13_Da KnownBoundary 1 65.94 21.84 32.79 19.28 37.44 15.22 21.60 8.71 18.11 7.68 35.96 19.06 107.95 38.14 32.26 35.63 19.82 8.00 4.33 20.33 11.37 48.01 22.71 57 E13a_E14b KnownJunction 0 107.43 85.84 98.78 40.42 85.82 42.99 20.05 49.45 51.56 51.01 133.09 121.54 131.65 199.66 204.83 178.07 103.69 41.79 44.99 45.13 120.03 129.14 107.47 58 ER13b ExonRegion 1 52.22 22.99 34.04 16.21 33.04 19.73 15.71 12.17 15.76 6.13 35.25 60.24 69.94 73.72 63.01 73.92 18.08 14.98 13.50 12.26 12.55 60.65 61.61 59 E13_Db KnownBoundary 1 60.23 47.36 42.31 13.88 34.21 32.25 19.03 19.30 15.10 2.77 25.95 57.32 47.07 104.89 78.74 107.07 27.77 17.24 25.88 9.08 14.58 110.89 100.98 60 ER13c ExonRegion 0 26.86 10.58 19.14 7.69 11.50 13.71 6.58 10.54 6.18 3.01 10.26 36.72 28.92 37.77 36.57 30.58 12.68 8.31 9.81 4.76 6.86 53.93 35.78 61 E13_Dc NovelBoundary 0 10.37 12.10 6.86 5.86 23.94 4.77 4.15 7.23 7.58 5.80 14.42 18.46 17.53 18.60 27.44 21.36 0.00 2.32 4.80 15.72 24.90 20.27 11.52 62 I13 Intron 0 0.00 0.00 0.00 0.00 2.97 2.03 4.40 0.00 0.00 0.00 2.14 0.00 4.28 17.37 9.08 9.89 0.00 0.00 0.00 2.36 0.00 2.31 3.26 63 I13_SR1 SilentIntronRegion 0 0.00 0.00 0.00 0.00 2.97 2.03 4.40 0.00 0.00 0.00 2.14 0.00 4.28 17.37 9.08 9.89 0.00 0.00 0.00 2.36 0.00 2.31 3.26 64 E14_Aa NovelBoundary 0 187.66 65.19 148.96 193.58 55.09 50.60 102.10 190.87 124.62 179.20 36.27 48.62 45.78 51.98 30.41 112.36 70.69 203.33 40.47 94.85 41.14 68.52 66.24 65 ER14a ExonRegion 1 95.83 33.22 49.73 23.06 29.80 22.42 29.62 21.06 19.80 13.65 33.11 57.22 50.31 60.78 78.65 68.60 39.14 27.76 20.48 26.89 31.22 53.25 57.12 66 E14_Ab KnownBoundary 0 140.47 43.81 81.49 32.80 8.57 21.81 12.23 25.22 20.28 29.71 20.11 30.76 35.06 53.51 36.34 54.17 41.14 25.54 7.34 11.82 43.86 37.60 44.22 67 ER14b ExonRegion 0 245.27 101.95 146.88 69.45 89.58 63.26 58.52 66.44 57.20 60.73 173.07 118.03 119.07 231.69 205.20 219.21 146.37 79.10 54.64 57.91 144.09 206.06 179.45 68 E14a_E15a KnownJunction 0 160.32 72.75 170.63 63.16 92.36 39.58 29.50 62.64 51.88 56.28 157.51 111.49 113.79 276.83 254.53 180.64 157.46 54.93 73.51 52.16 121.64 189.33 96.97 69 ER15a ExonRegion 0 220.28 69.95 144.23 64.86 60.69 58.62 57.22 70.05 61.00 49.38 171.09 90.82 100.86 238.57 218.33 228.69 140.09 61.73 55.24 58.34 142.05 199.06 123.63 70 E15a_E16a KnownJunction 0 288.94 76.10 150.32 73.88 66.04 50.43 57.06 75.49 70.05 56.11 191.36 91.68 94.15 264.70 207.55 242.67 141.56 64.79 42.07 68.97 136.34 234.16 133.08 71 ER16a ExonRegion 0 181.95 54.55 167.29 60.62 52.30 49.41 36.52 71.39 58.94 46.58 173.26 58.70 98.87 223.79 221.64 175.77 140.75 61.66 48.15 51.63 135.37 189.07 125.25 72 E16a_E17a KnownJunction 1 153.06 67.22 182.37 67.32 71.14 86.60 53.13 72.58 64.90 47.01 123.50 60.17 169.14 189.65 287.78 122.96 128.19 59.07 44.42 59.51 148.08 192.40 100.30 73 ER17a ExonRegion 0 124.14 53.76 167.08 58.54 62.24 73.11 41.56 60.20 60.52 43.83 134.38 62.31 111.34 171.94 232.35 116.82 139.07 52.46 45.98 52.82 124.17 175.38 81.08 74 ER17b ExonRegion 0 141.74 50.68 147.14 68.98 74.51 42.32 34.08 55.98 62.50 42.88 164.59 113.30 97.41 203.79 261.87 202.10 147.32 79.03 57.14 58.89 130.73 209.99 101.07 75 E17b_E18a KnownJunction 0 207.89 56.50 186.84 93.43 77.93 29.93 34.67 70.20 63.63 40.35 163.73 78.78 133.60 259.70 260.21 221.31 99.49 80.63 75.86 51.77 109.59 215.42 77.77 76 ER18a ExonRegion 0 158.67 67.67 210.60 83.77 57.11 43.25 48.15 71.06 70.69 46.95 187.07 88.54 100.45 216.05 306.99 185.39 140.69 76.91 58.86 72.35 126.25 210.38 118.83 77 E18a_E19a KnownJunction 0 181.00 55.19 245.53 105.45 108.66 75.30 53.79 72.41 71.82 42.76 205.47 94.23 98.37 193.07 297.30 176.36 125.76 78.39 35.20 88.01 117.56 248.73 77.00 78 ER19a ExonRegion 0 116.14 47.85 181.05 58.03 48.76 35.27 30.61 46.90 52.53 31.96 127.09 89.67 113.02 156.37 232.88 148.11 88.95 77.47 53.10 58.93 94.64 154.79 104.79 79 E19_Da KnownBoundary 0 192.70 52.42 82.67 20.91 8.66 16.58 44.52 11.46 20.49 16.79 38.27 31.36 25.49 94.59 107.67 58.02 34.32 13.14 9.32 38.61 20.88 54.80 37.90 80 E19_Db KnownBoundary 0 25.71 13.42 8.96 4.13 4.33 20.27 6.23 2.55 3.59 6.66 7.58 18.91 6.82 31.79 0.00 25.55 9.07 16.17 23.81 28.70 3.15 30.00 12.89 81 E19_Dc KnownBoundary 0 0.00 0.00 1.77 2.03 0.00 0.00 0.00 2.42 1.65 0.00 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 0.00 0.00 0.00 82 ER19b ExonRegion 0 90.00 47.06 93.19 30.31 21.15 27.16 32.09 13.33 27.76 19.99 32.40 35.46 37.07 95.20 64.93 66.66 31.59 35.46 35.65 44.68 14.59 56.65 52.58 83 E19_Dd KnownBoundary 0 6.67 6.51 36.22 12.92 0.00 13.74 8.83 10.06 7.73 5.18 7.74 0.00 0.00 16.66 19.28 25.63 4.77 8.29 19.20 9.65 12.05 22.17 28.94 84 ER19c ExonRegion 0 52.01 34.86 82.27 29.20 19.88 24.36 26.48 13.33 27.53 19.66 25.96 32.16 32.16 83.29 39.79 67.09 29.71 35.64 43.68 38.60 15.43 52.39 56.64 85 ER19d ExonRegion 0 35.63 27.45 73.73 29.76 17.39 23.84 21.85 15.56 24.70 19.50 20.94 18.04 30.49 67.13 35.30 60.93 24.76 36.34 47.78 38.65 17.63 46.88 50.41 86 ER19e ExonRegion 0 39.99 46.10 85.15 45.76 28.48 25.18 32.62 29.54 37.64 29.67 19.36 26.61 33.93 35.50 37.78 38.72 25.40 43.15 32.55 42.27 26.87 40.52 47.07 87 IG47_SR4 SilentIntergenicRegion 0 12.22 5.87 24.58 3.26 6.87 11.76 4.25 9.09 13.59 7.67 8.05 10.54 7.70 8.21 11.61 16.21 5.27 8.54 28.61 8.19 9.19 20.05 19.80