Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 WWC3 Gene 0 76.73 30.53 48.09 29.40 57.02 37.45 28.58 46.69 54.23 42.03 68.06 9.94 104.48 180.61 68.97 24.68 136.12 44.84 30.55 17.44 39.47 79.42 52.45 2 380861 Transcript 0 42.71 18.48 26.63 16.69 32.22 26.41 26.64 28.11 36.04 28.03 35.08 4.76 71.83 99.35 40.73 10.49 83.65 23.12 11.75 12.64 25.70 48.80 28.81 3 466248 Transcript 0 2.54 2.55 9.96 3.99 2.34 2.00 4.05 3.09 2.61 2.33 9.67 0.00 3.21 11.63 8.46 0.97 5.59 4.49 1.91 5.69 1.32 0.80 1.60 4 454666 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 398613 Transcript 0 0.53 0.38 1.15 0.85 0.67 0.92 0.25 1.30 3.24 1.94 3.99 0.54 11.14 9.33 1.81 0.93 7.84 4.16 3.98 1.33 2.75 4.95 4.96 6 ER1a ExonRegion 0 3.55 2.22 1.41 0.70 1.13 3.71 0.27 1.63 3.54 2.25 5.20 0.00 3.39 24.46 4.60 1.30 11.64 3.46 2.37 2.47 5.90 4.22 2.28 7 E1_Ab KnownBoundary 0 9.93 6.51 3.99 2.06 0.00 8.40 0.00 7.80 21.15 10.64 25.16 0.00 0.00 37.50 8.90 0.00 25.99 8.75 8.09 8.12 26.01 2.33 7.68 8 ER1b ExonRegion 1 4.00 5.81 6.59 1.93 7.26 8.97 6.77 9.08 22.82 14.65 26.97 0.00 20.17 58.11 13.82 0.24 57.95 11.20 6.78 6.92 27.14 15.64 12.73 9 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 E1a_E3a KnownJunction 1 0.00 5.85 7.86 5.03 3.74 10.51 25.79 10.64 24.48 19.77 20.01 0.00 68.83 70.69 28.43 0.00 73.02 20.15 0.00 15.79 29.84 29.21 22.96 11 I1_AR1 ActiveIntronRegion 0 6.41 2.05 6.70 1.74 1.35 1.82 4.05 5.94 1.04 1.73 13.13 0.00 3.90 21.64 15.34 2.50 7.35 7.61 8.04 6.61 1.11 0.00 0.00 12 E2_Aa NovelBoundary 0 3.63 0.00 24.51 0.00 0.00 5.17 2.12 4.35 0.00 3.20 10.27 0.00 0.00 6.89 19.04 3.67 15.52 2.57 4.80 9.01 5.93 2.27 3.93 13 ER2a ExonRegion 0 5.08 5.09 19.93 7.98 4.68 4.01 8.09 6.19 5.22 4.66 16.65 0.00 6.42 23.26 16.92 1.95 11.17 8.99 3.83 11.39 2.64 1.59 3.21 14 E2_Da NovelBoundary 0 11.34 3.22 22.21 7.36 12.82 8.69 11.04 0.00 3.59 6.98 13.79 6.75 6.82 10.24 0.00 0.00 3.83 6.76 3.76 11.31 0.00 6.25 0.00 15 E3_Ab NovelBoundary 0 0.00 0.00 5.23 4.36 14.35 37.59 23.98 10.72 29.28 21.57 23.16 0.00 19.32 48.38 9.89 3.93 53.30 13.35 8.66 2.56 10.32 33.43 14.85 16 ER3a ExonRegion 1 0.00 3.66 6.94 4.09 10.17 27.75 28.42 14.63 32.69 22.86 25.77 0.00 59.72 80.23 19.15 2.97 83.84 16.75 6.58 10.92 24.83 39.73 20.95 17 ER3b ExonRegion 0 6.13 2.78 14.49 7.68 21.94 26.31 14.93 19.69 47.84 29.57 54.71 1.28 91.53 131.16 27.91 8.23 102.99 46.58 27.70 18.39 39.39 42.31 42.35 18 E3a_E5b KnownJunction 1 6.45 3.35 25.96 15.68 7.72 16.13 3.89 21.85 49.48 30.73 60.80 6.30 185.54 141.80 20.52 19.91 115.75 62.80 41.79 24.03 43.06 52.17 89.03 19 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER5a ExonRegion 0 1.06 0.76 2.30 1.70 1.34 1.83 0.50 2.59 6.48 3.87 7.97 1.08 22.28 18.47 3.63 1.86 15.68 8.31 7.96 2.66 5.51 9.90 9.91 21 ER5b ExonRegion 1 4.96 8.02 17.41 13.09 17.69 15.11 10.89 21.93 58.60 38.09 76.18 5.82 231.47 196.29 44.12 8.51 174.74 38.36 55.22 14.02 58.87 102.21 62.09 22 E5a_E6a KnownJunction 0 42.67 21.31 17.33 24.94 78.86 68.77 65.05 45.51 81.31 53.16 102.03 6.00 216.38 294.13 58.22 28.80 310.89 89.29 188.99 21.48 107.86 263.79 192.75 23 ER6a ExonRegion 1 11.49 11.81 16.82 13.35 30.93 33.58 23.56 24.20 55.97 41.24 87.18 3.82 221.95 298.75 81.16 12.81 201.57 53.42 93.58 24.70 92.64 148.53 104.99 24 E6a_E7a KnownJunction 1 0.00 14.80 28.47 13.09 42.95 31.00 10.55 18.28 39.15 43.44 34.27 5.70 221.90 213.37 23.73 7.60 163.25 43.15 32.28 31.51 82.04 60.19 82.20 25 ER7a ExonRegion 1 4.63 9.33 23.08 9.49 15.52 20.40 13.12 16.25 44.31 33.25 54.82 14.56 340.91 132.79 36.16 7.02 110.75 42.50 41.77 12.82 67.16 61.70 80.90 26 E7a_E8a KnownJunction 0 6.52 16.31 12.45 5.89 15.28 9.37 13.56 8.34 58.94 29.04 90.50 25.21 264.27 115.72 56.86 14.78 90.60 56.34 49.32 18.09 62.70 79.85 81.01 27 ER8a ExonRegion 1 9.41 9.14 27.28 9.55 17.54 20.07 16.03 22.68 47.63 36.57 69.05 9.32 143.66 159.70 51.60 11.36 145.90 63.79 42.19 22.63 70.26 86.77 76.62 28 E8a_E9a KnownJunction 1 6.89 6.31 19.46 9.02 19.86 13.51 6.76 12.61 45.08 36.21 38.59 7.05 53.89 122.37 53.28 0.00 120.43 46.05 34.45 11.38 75.06 44.33 97.06 29 ER9a ExonRegion 0 4.70 6.28 19.03 4.86 11.86 12.27 7.03 14.35 26.10 26.29 48.79 10.16 62.82 130.24 35.67 11.08 126.49 36.31 21.38 17.42 39.53 62.01 52.92 30 E9a_E10a KnownJunction 1 6.22 12.23 22.09 2.06 12.56 16.81 18.86 17.29 22.80 26.67 47.17 0.00 26.46 165.23 44.13 11.79 169.71 37.35 24.94 37.90 69.93 60.99 62.91 31 I9_AR1 ActiveIntronRegion 1 12.08 0.00 2.78 0.77 5.09 2.79 4.80 0.94 1.14 1.06 21.33 0.00 0.00 13.82 2.60 11.31 15.08 0.00 0.00 0.00 0.00 0.79 1.12 32 ER10a ExonRegion 0 11.76 9.26 22.54 5.76 19.78 22.06 17.66 18.71 28.77 26.49 71.13 0.00 59.26 189.08 42.07 16.91 138.33 36.38 15.24 18.49 64.89 45.75 64.37 33 E10a_E11a KnownJunction 0 14.22 9.27 16.35 6.79 15.79 24.02 12.23 21.97 31.92 28.85 50.38 0.00 58.44 142.92 26.58 26.57 137.35 36.93 4.80 22.31 54.43 58.36 54.80 34 ER11a ExonRegion 0 8.27 6.20 12.51 2.82 11.44 12.13 8.17 19.00 20.78 24.09 38.79 0.75 48.08 142.09 34.50 16.08 110.36 33.85 19.72 9.55 41.50 44.82 35.64 35 E11a_E12a KnownJunction 0 0.00 12.63 23.18 1.27 21.14 9.77 5.87 41.12 28.41 31.59 54.22 0.00 45.45 147.80 47.59 19.40 123.98 63.92 22.78 11.57 28.79 30.25 46.44 36 ER12a ExonRegion 0 17.45 7.84 23.40 14.48 19.21 17.44 17.52 34.74 41.40 35.58 62.88 0.00 77.80 218.10 63.70 16.12 149.49 66.70 32.92 17.33 47.36 79.54 56.16 37 E12a_E13a KnownJunction 0 10.30 2.89 26.26 12.22 14.09 19.76 11.84 10.19 47.92 20.28 43.80 0.00 67.04 197.48 52.04 16.24 101.73 58.91 3.86 19.69 37.44 72.26 26.97 38 ER13a ExonRegion 0 6.55 4.81 9.86 4.63 6.62 7.63 6.59 11.08 20.03 16.91 32.34 2.85 36.32 133.17 37.54 12.51 97.29 33.41 17.11 9.55 26.47 32.04 25.54 39 E13a_E14a KnownJunction 0 6.37 0.00 5.20 5.43 20.54 10.45 5.83 10.84 20.66 13.67 26.06 0.00 6.82 128.97 32.14 31.27 86.96 35.32 0.00 3.26 27.37 22.84 25.44 40 I13_AR1 ActiveIntronRegion 0 5.16 4.47 1.77 2.37 7.21 6.58 8.50 8.66 14.89 7.77 2.65 4.83 13.64 17.47 3.06 1.40 12.09 4.59 13.32 3.52 1.09 5.24 2.04 41 E14_Aa NovelBoundary 0 0.00 0.00 3.37 1.40 0.00 0.00 4.50 0.00 0.00 5.88 5.37 0.00 47.07 4.94 0.00 19.57 8.13 13.89 4.71 2.56 0.00 5.02 0.00 42 ER14a ExonRegion 0 11.96 6.97 10.65 7.93 7.63 23.46 9.39 19.76 33.64 20.72 66.47 3.01 36.90 172.28 44.12 23.16 140.60 47.05 30.43 7.97 37.01 38.14 51.23 43 E14a_E15a KnownJunction 0 27.49 10.92 15.61 14.45 4.33 32.25 8.39 30.11 32.81 17.51 73.28 0.00 61.68 214.14 63.54 27.26 182.14 59.49 61.46 20.77 34.10 38.52 61.97 44 ER15a ExonRegion 0 11.43 3.52 18.25 8.63 9.95 24.89 16.98 20.03 39.24 27.86 70.85 7.27 35.14 170.71 53.11 30.79 160.91 42.87 20.68 13.42 29.74 65.17 41.47 45 E15a_E16a KnownJunction 0 23.56 15.52 8.75 8.82 28.69 37.82 15.24 22.59 48.96 39.11 66.54 6.00 20.13 158.93 37.83 45.54 133.43 54.72 21.74 2.43 29.04 54.99 50.45 46 ER16a ExonRegion 0 12.99 4.53 7.03 6.17 13.99 22.26 11.40 16.67 40.25 20.17 53.43 2.09 36.28 140.68 41.38 21.39 126.42 39.25 20.06 7.04 35.84 52.61 37.64 47 E16a_E17a KnownJunction 0 29.56 16.64 14.34 9.86 23.09 24.08 11.04 31.09 57.84 30.57 78.23 0.00 61.68 150.69 33.75 27.51 147.26 65.33 31.62 12.27 49.79 72.99 46.69 48 ER17a ExonRegion 0 20.54 2.96 24.30 14.99 27.99 33.86 12.97 30.83 56.32 39.78 94.74 7.40 54.19 238.12 59.86 35.39 183.64 67.08 28.83 17.34 52.52 82.25 54.75 49 E17a_E18a KnownJunction 0 45.42 16.44 31.90 16.65 14.86 29.47 18.33 23.70 55.96 41.29 91.60 5.55 41.88 256.64 67.74 21.70 204.77 53.56 21.27 17.00 71.66 84.81 52.07 50 ER18a ExonRegion 0 20.74 10.16 31.13 16.64 17.48 26.24 12.81 27.89 42.95 29.75 68.47 2.24 51.02 221.23 47.87 29.00 156.32 58.32 24.59 21.67 54.04 60.67 48.27 51 E18a_E19a KnownJunction 0 24.97 8.88 38.17 11.55 27.08 23.62 19.56 21.85 37.21 19.02 64.38 0.00 40.58 188.53 61.56 21.62 175.41 52.07 21.37 19.56 62.02 52.29 19.63 52 ER19a ExonRegion 0 14.12 4.90 18.85 9.52 9.31 22.13 11.55 22.99 30.21 20.56 53.01 0.00 42.83 170.21 56.12 16.74 122.57 30.78 21.69 13.13 38.33 48.85 33.33 53 E19_Da NovelBoundary 0 3.78 6.38 7.78 4.73 0.00 0.00 2.25 4.60 16.67 5.13 4.42 0.00 6.82 23.84 4.70 11.71 12.81 15.13 4.61 8.95 5.81 2.57 13.06 54 E19a_E20a KnownJunction 0 10.37 2.76 34.59 8.22 0.00 23.00 8.17 17.00 38.66 20.71 72.12 6.15 48.86 180.06 70.34 23.75 128.75 48.00 21.84 9.01 49.17 63.07 21.77 55 I19 Intron 0 11.68 8.70 8.10 9.84 12.83 15.60 10.79 9.70 20.50 9.52 10.27 0.55 17.27 24.91 10.38 6.90 26.55 19.61 6.24 6.03 8.52 12.79 13.17 56 I19_SR1 SilentIntronRegion 0 8.66 5.80 3.63 7.56 12.95 12.06 5.42 7.99 18.96 7.42 8.39 0.44 4.93 22.99 8.22 6.27 20.89 14.82 4.74 3.96 6.56 10.60 11.30 57 I19_AR1 ActiveIntronRegion 0 14.54 12.86 8.83 11.00 13.22 16.27 15.04 8.60 17.50 10.70 11.03 0.46 25.84 25.40 10.56 5.42 29.75 24.74 5.29 6.98 11.26 12.86 13.51 58 I19_SR2 SilentIntronRegion 0 12.41 6.33 16.76 12.61 11.87 22.37 13.80 16.06 30.78 11.80 12.95 1.00 26.79 28.50 15.04 11.63 32.72 19.51 11.77 8.76 7.07 17.73 16.86 59 E20_Aa NovelBoundary 0 10.30 3.35 22.29 5.49 10.61 9.99 15.85 19.18 46.47 14.40 7.32 0.00 27.11 39.14 21.88 12.82 38.80 23.79 12.33 10.61 6.30 5.88 23.56 60 ER20a ExonRegion 0 33.00 16.61 25.30 12.27 29.77 25.03 16.41 38.79 52.63 33.88 67.54 3.29 61.48 181.77 53.52 23.45 151.56 56.21 27.75 14.27 35.54 61.60 48.17 61 E20a_E21a KnownJunction 0 45.71 7.63 30.87 19.24 47.20 20.27 23.45 26.74 58.39 38.41 76.07 0.00 85.55 231.97 80.85 36.40 189.15 80.50 52.24 26.53 60.79 76.42 62.74 62 ER21a ExonRegion 0 29.25 6.61 28.96 15.70 22.90 42.28 14.86 26.30 52.14 25.21 81.91 5.90 86.27 227.41 49.09 36.13 159.20 65.91 40.68 17.70 57.30 69.60 69.52 63 E21a_E22a KnownJunction 0 30.97 15.39 29.30 37.89 41.85 49.46 22.61 46.87 58.54 27.48 73.49 6.45 116.55 207.78 69.35 27.60 155.31 99.82 30.31 29.40 56.65 46.29 61.03 64 ER22a ExonRegion 0 40.24 25.85 33.16 29.31 37.89 47.95 28.69 41.37 65.90 36.76 97.19 10.38 103.48 278.55 53.66 27.52 178.07 91.67 66.14 21.28 58.74 71.53 86.39 65 E22a_E23a KnownJunction 0 44.67 26.51 45.71 27.74 49.15 40.09 33.48 51.10 75.11 40.56 114.13 13.95 53.08 261.11 67.12 30.42 165.68 68.65 59.95 20.26 78.15 110.71 111.91 66 ER23a ExonRegion 0 29.58 14.34 31.67 19.55 27.11 29.25 14.86 29.44 45.10 30.73 60.00 5.20 73.70 197.22 57.08 22.96 132.28 49.95 22.65 23.92 43.80 52.28 53.01 67 E23a_E24a KnownJunction 0 40.23 21.38 31.55 31.50 55.18 26.01 22.21 19.63 57.44 33.66 59.23 0.00 80.03 202.19 86.04 34.35 148.01 71.38 29.65 30.17 55.41 47.46 59.84 68 E24_Aa NovelBoundary 0 16.60 14.14 16.79 2.06 12.14 5.00 7.60 10.76 5.27 2.85 2.00 0.00 0.00 21.54 5.32 4.36 34.22 14.38 4.80 6.52 8.65 18.06 4.35 69 ER24a ExonRegion 0 41.09 33.97 43.30 23.72 55.69 32.91 30.26 37.70 54.89 43.68 97.85 7.85 76.69 208.95 60.22 22.41 177.01 63.82 37.83 31.25 49.12 67.26 47.45 70 E24a_E25a KnownJunction 0 47.49 40.26 38.56 23.77 74.11 43.04 43.32 31.01 72.22 54.69 92.81 11.55 122.23 230.44 51.55 19.05 216.46 64.96 27.39 56.95 55.72 99.81 35.68 71 E25_Aa NovelBoundary 0 35.27 0.00 10.26 12.75 8.49 21.69 11.22 14.09 13.95 1.29 1.95 0.00 26.46 2.47 0.00 3.67 4.77 2.40 12.71 0.00 3.03 5.51 4.27 72 ER25a ExonRegion 0 70.93 36.90 35.39 34.18 89.32 48.54 37.88 45.13 64.55 52.13 85.08 8.19 140.42 216.85 51.97 22.21 147.88 37.83 37.05 25.00 33.93 84.99 48.85 73 E25_Da KnownBoundary 0 80.09 34.40 20.61 32.83 82.68 79.78 43.46 36.51 60.27 42.60 36.11 6.30 83.92 74.93 14.09 7.52 38.15 15.01 13.08 11.19 0.00 47.03 25.78 74 ER25b ExonRegion 0 167.28 62.17 90.31 56.94 113.86 63.66 52.06 85.56 83.45 67.23 89.36 19.05 155.40 222.03 110.74 37.70 166.09 52.10 38.06 21.36 42.23 122.06 69.04