Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GEMIN8 Gene 0 41.42 29.76 44.33 31.98 22.24 26.61 14.89 20.95 19.48 21.95 46.13 37.90 37.87 57.79 61.08 41.04 34.17 28.21 31.76 18.69 27.73 27.33 23.70 2 398350 Transcript 0 19.94 16.68 20.46 15.02 11.87 13.17 9.59 9.46 10.31 9.59 9.33 16.52 20.15 14.13 14.40 18.75 12.70 10.87 17.73 9.50 6.08 9.01 11.14 3 398355 Transcript 0 7.04 9.27 20.84 6.49 8.06 2.90 2.25 2.46 1.79 8.22 5.26 6.00 12.99 9.18 4.82 4.19 0.00 10.20 9.51 9.78 6.24 11.70 17.41 4 380523 Transcript 0 4.03 2.23 3.29 2.67 2.17 3.05 2.11 0.95 2.02 1.34 14.87 11.66 24.89 13.55 2.51 16.28 5.51 6.60 6.01 2.73 3.46 7.24 9.21 5 332885 Transcript 1 0.74 1.40 1.25 1.40 2.46 1.05 1.97 0.60 1.89 1.18 7.54 10.79 6.23 16.05 3.97 9.94 5.69 6.54 2.56 2.68 8.35 8.55 4.39 6 477386 Transcript 0 3.09 1.27 0.23 2.79 2.34 2.75 1.32 1.91 1.84 1.28 6.03 5.54 3.36 10.58 5.87 4.09 7.29 1.15 3.96 5.05 4.13 2.34 1.84 7 460203 Transcript 0 8.02 4.15 6.82 5.54 7.62 2.00 3.21 1.10 3.78 2.80 5.55 8.34 4.42 8.35 8.89 5.81 5.64 3.50 4.82 3.54 4.62 2.96 3.16 8 ER1a ExonRegion 0 0.00 0.93 0.46 0.62 0.00 0.00 2.70 0.00 0.00 0.91 1.69 0.00 0.00 4.67 1.09 11.15 3.99 1.00 2.12 0.00 0.00 0.00 1.84 9 ER1b ExonRegion 0 0.00 4.07 1.23 1.36 0.00 0.00 9.27 0.00 0.00 1.15 5.80 0.00 0.00 12.99 2.90 26.75 9.90 1.85 3.19 0.00 0.00 0.00 2.94 10 ER1c ExonRegion 1 52.78 39.65 17.07 12.06 26.57 44.46 30.82 6.10 4.34 13.45 70.73 4.40 14.76 81.32 67.28 77.71 66.08 29.42 54.40 21.74 35.51 33.16 47.27 11 E1_Da NovelBoundary 0 0.00 0.00 1.15 1.43 0.00 0.00 0.00 0.00 1.79 2.63 11.63 0.00 0.00 5.36 0.00 0.00 8.79 17.12 0.00 2.75 3.15 0.00 4.27 12 E1a_E4a KnownJunction 0 21.56 5.99 17.18 7.79 0.00 10.68 3.67 12.98 5.44 19.80 12.32 12.45 14.12 4.59 15.20 21.19 8.42 17.41 9.60 5.88 23.10 18.00 33.29 13 E1a_E5a KnownJunction 0 7.04 9.27 20.84 6.49 8.06 2.90 2.25 2.46 1.79 8.22 5.26 6.00 12.99 9.18 4.82 4.19 0.00 10.20 9.51 9.78 6.24 11.70 17.41 14 I1 Intron 1 0.67 1.29 0.00 1.93 1.70 2.32 0.84 0.00 2.92 2.17 12.25 1.13 1.22 15.68 4.54 14.12 19.87 9.31 11.10 6.07 15.36 9.24 12.09 15 I1_AR1 ActiveIntronRegion 1 0.68 1.30 0.00 1.95 1.72 2.35 0.85 0.00 2.95 2.19 12.40 1.14 1.24 15.86 4.60 14.30 20.12 9.42 11.24 6.14 15.55 9.36 12.25 16 E2_Aa NovelBoundary 0 3.78 3.35 1.48 1.93 4.33 2.38 0.00 0.00 1.71 4.27 31.43 0.00 0.00 24.02 0.00 12.30 26.46 30.26 8.75 2.68 11.55 3.12 3.33 17 ER2a ExonRegion 1 1.48 2.80 2.51 2.80 4.92 2.11 3.94 1.21 3.77 2.36 15.07 21.59 12.46 32.10 7.93 19.88 11.37 13.08 5.12 5.36 16.71 14.03 8.77 18 E2_Da NovelBoundary 1 6.45 2.83 4.76 7.26 4.24 5.56 0.00 1.56 8.54 7.47 21.95 24.46 6.82 43.68 0.00 16.15 0.00 35.94 22.40 13.74 19.65 14.02 21.34 19 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.06 0.00 20 I2 Intron 0 6.60 5.83 4.16 9.06 8.53 13.03 6.33 6.39 14.83 7.78 27.77 53.24 67.42 37.38 10.93 23.14 26.38 15.18 6.24 16.23 10.13 12.86 11.77 21 I2_AR1 ActiveIntronRegion 1 2.75 4.43 3.52 4.73 5.21 9.40 3.48 2.58 8.60 7.59 25.34 28.44 48.94 50.41 9.45 31.54 24.36 19.02 4.90 16.31 23.00 11.97 15.48 22 I2_AR2 ActiveIntronRegion 1 3.69 8.04 2.16 7.74 7.88 13.13 5.85 5.74 14.78 10.32 26.82 52.00 79.76 38.61 8.48 18.37 27.67 12.17 2.74 12.59 6.68 11.36 7.66 23 I2_SR1 SilentIntronRegion 0 5.44 5.58 3.52 5.41 8.63 9.81 7.83 4.87 13.74 5.78 24.79 58.74 68.15 31.68 7.40 15.91 26.39 7.53 3.76 11.07 4.78 7.80 6.40 24 I2_AR3 ActiveIntronRegion 0 8.61 5.54 5.07 11.35 9.42 14.62 6.71 7.81 16.49 7.59 29.39 57.56 67.57 35.77 12.92 24.70 26.47 17.28 8.23 18.67 9.82 14.83 13.62 25 E3_Aa NovelBoundary 1 13.71 9.60 6.27 10.75 7.98 18.63 6.58 6.70 16.00 4.14 16.06 30.16 39.12 41.03 25.09 42.21 3.83 10.82 12.33 16.62 19.89 5.33 12.55 26 ER3a ExonRegion 0 7.14 3.81 0.68 8.38 7.02 8.25 3.97 5.74 5.52 3.85 18.08 16.62 10.07 31.74 17.62 12.26 18.57 3.45 11.87 15.16 12.38 7.03 5.51 27 E3_Da NovelBoundary 1 10.45 3.16 1.27 12.62 20.20 27.09 11.00 6.86 17.27 10.21 35.01 12.15 60.71 47.91 9.77 22.30 16.46 22.47 22.31 20.96 31.94 11.57 12.38 28 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 I3 Intron 0 16.83 14.50 9.30 15.31 16.90 13.20 7.46 8.57 13.12 7.43 20.21 53.88 60.72 30.90 14.35 21.60 20.62 11.54 7.79 13.44 10.92 12.60 9.37 30 I3_AR1 ActiveIntronRegion 0 16.87 14.54 9.32 15.35 16.94 13.24 7.48 8.59 13.16 7.45 20.27 54.03 60.88 30.98 14.38 21.65 20.67 11.57 7.81 13.48 10.95 12.63 9.40 31 E4_Aa NovelBoundary 1 33.49 16.77 11.09 10.72 11.38 18.34 1.81 13.06 12.41 6.21 34.06 42.31 96.10 43.32 23.73 51.18 34.50 31.96 0.00 8.18 24.34 19.10 3.76 32 ER4a ExonRegion 0 44.60 9.94 24.76 15.04 33.22 12.68 12.50 16.27 13.47 23.83 74.72 47.68 48.67 80.18 46.46 56.83 53.10 41.30 27.19 17.77 38.35 27.52 27.00 33 E4_Da KnownBoundary 1 3.78 2.89 10.23 15.05 16.38 2.27 20.89 2.14 7.52 2.90 39.43 25.21 34.41 37.02 0.00 27.86 30.67 20.56 17.69 3.26 8.65 7.78 8.19 34 E4a_E5a KnownJunction 1 37.86 9.34 27.79 6.93 3.48 15.28 4.37 21.24 9.52 19.64 84.81 26.11 33.44 108.95 31.89 59.30 44.88 29.68 19.86 22.18 55.35 22.60 26.29 35 ER4b ExonRegion 1 5.32 4.46 6.57 5.34 4.35 6.11 4.21 1.91 4.04 2.68 27.63 23.32 49.78 27.09 5.01 28.98 11.03 10.62 12.02 5.46 6.91 12.15 9.71 36 E4_Db NovelBoundary 1 3.04 9.21 4.58 7.29 8.66 2.50 3.71 5.38 11.81 6.72 21.37 37.06 61.85 12.18 13.72 19.31 16.83 11.81 0.00 2.36 2.59 9.37 8.37 37 E4b_E5a KnownJunction 0 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 0.00 0.00 0.00 3.59 0.00 2.57 0.00 0.00 0.00 2.33 8.71 38 I4 Intron 0 7.60 10.64 8.19 12.53 8.12 8.54 6.42 6.42 10.62 6.89 15.12 35.06 57.85 25.44 8.54 18.50 17.51 5.83 7.70 8.54 4.20 9.10 8.13 39 I4_AR1 ActiveIntronRegion 1 3.90 4.41 3.98 7.12 4.06 5.99 7.44 2.96 9.32 4.83 16.41 41.55 75.85 26.50 3.62 17.46 18.89 3.43 6.77 9.01 3.70 7.46 6.45 40 I4_SR1 SilentIntronRegion 0 5.56 7.03 7.42 10.83 7.46 9.98 4.66 4.31 7.46 4.98 15.57 29.25 45.73 24.43 6.47 16.91 19.05 7.08 6.57 7.94 5.00 7.75 8.92 41 I4_AR2 ActiveIntronRegion 0 0.00 8.64 2.53 10.99 11.71 4.13 4.14 8.64 11.19 7.88 15.46 30.31 72.40 8.53 5.80 8.54 2.68 0.46 0.40 9.44 0.00 3.52 2.94 42 I4_AR3 ActiveIntronRegion 1 8.13 18.31 8.14 15.04 9.57 7.92 4.80 5.63 14.04 7.70 8.96 45.27 82.77 17.55 8.30 8.13 4.44 2.19 4.22 7.23 0.00 10.64 6.17 43 I4_SR2 SilentIntronRegion 0 5.53 17.34 11.02 15.06 8.61 7.72 6.88 11.60 12.09 9.01 18.13 31.09 45.55 26.68 12.83 23.77 19.66 7.89 11.30 6.89 5.09 9.77 11.18 44 I4_AR4 ActiveIntronRegion 0 31.53 14.37 16.06 24.41 18.52 12.89 12.40 12.36 18.76 13.83 10.94 37.76 54.66 36.30 20.17 30.30 21.70 7.51 11.20 16.04 6.27 15.67 4.70 45 E5_Aa NovelBoundary 1 44.30 5.99 43.76 32.93 28.52 18.74 22.21 15.85 15.57 17.76 16.74 81.93 63.79 19.19 25.96 54.86 37.40 24.46 41.70 14.89 19.21 8.76 15.45 46 ER5a ExonRegion 1 38.41 23.98 49.45 37.54 18.79 20.44 11.28 37.20 22.23 38.56 127.49 38.69 57.75 154.22 122.52 80.12 71.52 56.16 48.38 43.79 77.31 52.57 35.61 47 E5_Da NovelBoundary 1 10.67 2.89 9.91 10.12 11.88 29.70 21.95 9.78 11.14 5.13 9.58 43.36 60.39 26.43 28.80 46.57 4.49 8.29 4.80 20.01 5.93 17.02 3.24 48 E5a_E6b KnownJunction 1 53.79 41.77 59.19 72.52 37.18 43.04 25.17 48.71 30.96 63.23 155.88 31.21 61.36 154.10 185.18 99.12 126.13 65.62 56.47 57.14 85.81 68.95 52.33 49 I5 Intron 0 28.97 17.35 18.98 23.06 11.88 11.73 10.55 10.30 10.96 8.34 18.89 17.36 27.41 17.53 21.42 21.62 17.86 12.74 8.49 10.76 9.00 6.66 9.65 50 I5_SR1 SilentIntronRegion 0 27.30 17.10 16.45 21.90 12.89 14.88 9.28 8.62 11.00 9.35 19.19 17.70 30.08 19.55 22.20 25.50 19.28 10.88 8.39 12.68 11.12 6.12 12.27 51 I5_AR2 ActiveIntronRegion 0 33.76 18.87 24.66 26.58 10.86 6.93 13.43 13.92 11.58 7.10 19.57 17.85 24.47 15.08 21.42 16.15 16.50 16.84 9.21 8.06 5.84 8.05 5.64 52 E6_Aa NovelBoundary 1 82.31 60.58 48.64 38.92 33.70 45.31 18.55 24.07 16.35 11.20 8.05 24.91 54.22 23.49 18.05 16.92 9.54 18.24 4.80 6.52 8.90 20.33 16.56 53 ER6a ExonRegion 0 20.77 8.21 13.64 10.95 15.46 5.43 8.19 2.91 10.18 5.76 9.09 17.56 10.86 14.62 20.20 8.26 12.29 7.63 6.90 4.02 11.47 8.57 6.31 54 E6_Ab KnownBoundary 0 66.83 17.37 38.08 22.34 34.55 8.35 19.96 4.60 20.54 10.42 11.63 29.71 20.29 19.48 30.29 3.16 25.71 13.47 3.86 5.75 14.27 10.65 7.77 55 ER6b ExonRegion 0 108.12 62.65 122.37 90.99 46.71 73.62 34.66 59.27 50.72 59.06 168.14 122.56 109.68 204.65 205.58 130.22 105.46 84.83 72.62 45.86 98.99 66.42 61.23 56 E6a_E7a KnownJunction 0 0.00 2.89 3.61 0.00 4.33 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 4.53 0.00 3.76 0.00 0.00 4.80 0.00 0.00 0.00 0.00 57 E6a_E8a KnownJunction 1 84.53 63.08 94.91 64.06 34.97 64.74 23.54 53.03 43.95 55.95 55.59 56.27 36.20 116.90 195.56 104.42 29.83 48.25 53.93 28.57 52.88 45.68 33.80 58 ER6c ExonRegion 0 2.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.30 0.00 0.00 0.00 0.00 0.00 0.00 59 ER7a ExonRegion 0 3.30 1.34 3.20 5.68 3.08 0.57 1.44 0.40 1.17 2.65 4.88 7.47 2.39 5.91 6.48 5.41 4.64 2.87 2.76 6.60 2.39 0.32 3.19 60 ER8a ExonRegion 0 74.26 45.05 82.37 50.73 29.21 51.41 21.07 39.75 32.99 45.84 78.23 55.55 24.72 125.06 181.89 78.84 61.54 60.29 38.55 21.20 56.44 60.92 48.13 61 E8_Da KnownBoundary 0 118.84 90.05 103.78 69.42 35.31 54.46 30.34 49.82 38.69 48.38 102.34 72.47 39.61 101.65 152.67 84.17 105.56 76.98 72.00 24.48 83.03 77.22 67.10 62 ER8b ExonRegion 0 60.51 46.00 77.63 43.03 25.03 30.05 13.03 27.67 22.50 34.70 84.58 28.35 24.67 100.81 141.08 56.88 48.16 43.86 34.52 17.25 48.32 55.24 31.32 63 E8_Db KnownBoundary 0 23.49 36.77 36.52 33.33 14.60 16.30 16.43 12.28 31.42 33.55 41.33 30.61 72.24 27.72 31.52 20.42 17.95 16.17 32.38 18.22 5.56 67.05 19.63 64 ER8c ExonRegion 0 20.38 21.21 26.45 24.82 18.21 15.28 8.44 19.28 13.74 17.11 23.06 25.23 20.97 24.58 24.77 14.43 17.56 10.18 22.36 8.51 10.27 22.79 10.71 65 E8_Dc KnownBoundary 0 7.11 14.67 11.06 7.96 0.00 4.43 0.00 6.12 3.21 7.98 7.63 30.76 6.33 30.55 8.90 0.00 8.88 9.33 13.84 0.00 11.00 11.70 0.00 66 ER8d ExonRegion 1 39.87 32.42 40.46 29.41 23.73 26.34 16.48 18.93 20.62 18.26 16.98 33.04 40.30 23.58 27.70 26.35 21.42 20.75 33.33 19.00 12.16 18.02 20.45