Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ARSD Gene 0 43.59 50.62 110.56 17.71 72.38 78.84 28.57 106.66 100.51 70.93 3.36 6.45 23.36 26.58 14.77 0.99 1.37 55.43 48.16 66.12 42.74 26.43 24.74 2 358177 Transcript 0 0.00 0.00 35.27 6.86 0.00 0.00 0.00 43.91 43.16 44.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.48 0.00 0.00 0.00 0.00 0.00 3 381154 Transcript 0 105.30 104.31 243.46 35.61 153.18 143.97 50.74 191.80 165.31 114.04 3.02 5.17 23.13 31.01 17.32 0.00 0.31 66.73 75.93 88.04 53.21 42.79 28.99 4 495294 Transcript 0 1.73 4.34 11.80 2.48 7.00 5.51 2.25 14.19 9.51 7.21 0.27 0.69 2.25 1.28 0.35 0.00 0.00 7.87 4.52 7.96 3.36 1.14 1.44 5 494870 Transcript 0 16.22 8.97 5.37 2.04 10.13 8.79 13.43 6.54 5.38 2.47 7.08 18.79 11.83 8.62 21.25 8.97 12.29 6.95 10.11 20.36 7.60 5.56 13.07 6 217890 Transcript 0 5.47 14.18 6.88 3.03 8.41 9.69 2.87 13.23 7.61 11.23 0.55 2.55 9.08 5.85 4.76 0.60 0.38 12.36 12.65 13.85 2.58 2.75 4.26 7 481340 Transcript 0 3.78 6.51 1.83 2.06 0.00 8.69 1.72 7.27 1.45 8.97 0.00 0.00 5.84 0.00 0.00 0.00 0.00 5.02 7.44 9.20 0.00 0.00 0.00 8 458014 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 IG29_AR3 ActiveIntergenicRegion 0 1.29 4.31 31.02 0.88 5.65 7.78 4.73 8.60 8.55 6.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.21 0.92 1.00 0.00 0.60 1.27 10 ER1a ExonRegion 0 0.00 0.00 0.41 0.00 2.68 2.45 1.77 2.30 0.00 0.00 0.00 0.00 0.00 1.62 0.00 0.00 0.00 0.00 0.00 0.00 0.73 2.08 3.92 11 ER1b ExonRegion 0 5.53 5.43 19.66 0.88 20.76 54.07 19.37 17.63 11.80 17.25 1.35 0.00 0.00 12.37 5.55 0.00 0.00 45.80 25.57 29.03 25.91 17.41 26.98 12 E1_Ac KnownBoundary 0 2.82 7.96 30.25 2.06 15.79 31.57 19.21 19.06 16.55 31.78 0.00 0.00 0.00 4.53 4.45 0.00 0.00 63.76 25.51 39.63 25.02 8.27 14.17 13 E1_Ad KnownBoundary 0 18.67 3.03 5.71 0.00 3.40 25.04 2.08 15.90 17.71 7.23 0.00 0.00 0.00 5.30 9.64 0.00 0.00 34.95 22.59 19.69 7.35 5.88 7.34 14 ER1c ExonRegion 0 13.23 10.17 31.86 1.36 20.74 79.77 25.16 32.41 25.01 32.40 0.97 0.00 0.00 16.24 11.61 0.00 0.00 84.07 38.22 57.45 43.52 18.23 24.96 15 ER1d ExonRegion 0 13.63 5.63 22.00 0.86 5.72 47.51 11.76 25.20 32.86 31.85 0.00 0.00 4.58 7.93 8.43 0.00 0.00 68.50 24.15 31.57 19.27 6.88 9.56 16 E1a_E2a KnownJunction 0 6.37 3.35 13.42 0.00 0.00 14.93 7.77 16.72 31.42 25.22 0.00 0.00 0.00 4.77 0.00 0.00 0.00 28.02 18.26 19.81 4.94 0.00 3.59 17 E1a_E10b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER2a ExonRegion 0 4.67 1.82 45.49 5.14 10.42 15.16 5.60 46.36 49.06 54.37 2.85 1.21 10.38 19.67 9.01 0.00 1.12 54.61 35.19 62.99 51.14 19.59 25.47 19 E2a_E3a KnownJunction 0 6.08 0.00 66.64 8.09 23.77 31.57 3.80 54.51 84.03 51.55 2.53 0.00 20.94 26.66 15.20 0.00 0.00 103.55 97.79 67.82 52.57 19.04 45.16 20 ER3a ExonRegion 0 2.03 12.25 59.82 7.12 35.31 56.22 20.48 68.59 81.66 71.23 3.33 3.41 18.26 28.64 15.91 0.00 1.08 78.82 53.42 79.05 67.48 27.15 30.67 21 E3a_E4a KnownJunction 0 6.52 16.38 48.22 10.52 31.66 96.54 51.01 82.23 91.55 70.97 2.68 12.60 21.26 52.74 27.20 0.00 3.93 78.22 86.78 90.51 74.44 26.64 27.49 22 ER4a ExonRegion 0 9.53 17.01 64.53 11.66 23.99 34.19 17.81 91.50 107.97 65.83 3.61 3.10 35.12 45.09 20.85 0.00 1.66 74.68 82.07 91.02 79.14 33.13 34.69 23 E4_Da KnownBoundary 0 0.00 0.00 14.75 3.43 3.82 8.35 1.90 16.63 6.71 5.99 2.21 0.00 0.00 0.00 4.45 0.00 0.00 9.58 11.20 17.64 2.41 3.12 14.51 24 E4a_E5a KnownJunction 0 17.78 21.84 53.55 6.86 30.05 31.29 11.88 89.25 99.45 48.46 2.32 5.70 33.76 42.15 14.09 0.00 0.00 55.80 25.32 62.57 57.14 28.29 27.15 25 ER4b ExonRegion 0 16.22 8.97 5.37 2.04 10.13 8.79 13.43 6.54 5.38 2.47 7.08 18.79 11.83 8.62 21.25 8.97 12.29 6.95 10.11 20.36 7.60 5.56 13.07 26 ER5a ExonRegion 1 8.74 25.90 64.89 10.09 29.60 45.97 17.47 71.49 96.44 68.21 1.89 5.71 25.00 42.01 9.63 0.38 0.48 62.16 36.03 65.56 66.12 26.32 26.88 27 E5_Ab KnownBoundary 1 9.41 49.07 111.20 9.32 52.29 82.28 15.81 69.05 127.17 84.37 10.00 11.40 27.27 60.10 4.45 3.25 0.00 73.91 51.30 76.64 87.23 25.66 45.50 28 ER5b ExonRegion 1 14.10 32.10 87.00 11.71 51.02 90.45 18.21 94.36 126.40 93.35 9.98 3.22 38.34 56.80 11.72 0.24 0.00 74.96 45.41 74.99 65.37 32.49 44.33 29 E5a_E6a KnownJunction 0 23.71 30.78 99.61 25.01 51.78 80.41 25.35 110.41 158.30 90.55 9.37 6.30 55.35 49.97 22.50 0.00 0.00 63.42 64.47 63.09 71.29 28.72 28.77 30 E5a_E7a KnownJunction 0 3.78 6.51 1.83 2.06 0.00 8.69 1.72 7.27 1.45 8.97 0.00 0.00 5.84 0.00 0.00 0.00 0.00 5.02 7.44 9.20 0.00 0.00 0.00 31 E5a_E8a NovelJunction 0 0.00 0.00 6.92 2.06 0.00 0.00 1.94 2.30 4.37 1.48 0.00 0.00 6.33 2.47 0.00 0.00 0.00 1.95 4.42 0.00 8.71 2.39 0.00 32 ER6a ExonRegion 1 8.36 20.13 96.45 12.84 34.45 50.72 21.17 89.21 129.45 86.68 5.80 13.46 41.29 45.37 10.82 0.00 0.00 44.20 33.32 86.07 61.86 21.09 28.34 33 E6_Da NovelBoundary 0 3.11 6.71 17.18 9.66 0.00 7.10 8.97 16.22 15.48 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.31 4.52 18.28 12.05 0.00 7.43 34 E6a_E7a KnownJunction 0 0.00 0.00 0.00 1.30 0.00 4.77 0.00 5.09 0.00 6.61 0.00 0.00 6.82 4.94 4.45 0.00 0.00 2.45 4.80 0.00 0.00 0.00 0.00 35 E6a_E8a KnownJunction 0 9.41 9.60 56.95 3.06 39.39 53.09 19.65 73.07 123.64 63.82 0.00 13.05 19.48 46.15 6.30 0.00 0.00 27.98 27.11 54.14 40.53 22.17 28.43 36 E7_Aa NovelBoundary 0 9.56 26.11 18.24 5.03 0.00 0.00 2.16 14.83 11.08 3.33 0.00 0.00 0.00 2.47 4.45 0.00 0.00 4.10 0.00 3.13 11.49 7.96 3.67 37 ER7a ExonRegion 0 2.61 23.50 13.81 7.07 10.93 16.65 4.59 22.95 13.15 19.57 1.45 1.61 7.69 7.59 4.49 0.02 0.00 20.02 15.97 33.78 7.05 6.21 9.04 38 E7_Da KnownBoundary 0 23.26 58.21 38.44 38.62 22.07 10.05 29.10 67.20 30.12 27.88 6.69 13.20 46.59 16.83 9.77 4.19 17.30 71.80 36.61 65.20 8.34 7.65 16.05 39 ER7b ExonRegion 0 10.94 28.35 13.76 4.76 16.82 14.61 5.74 21.36 15.21 15.86 1.11 5.11 11.35 6.75 5.07 1.19 0.76 22.28 20.49 27.71 5.15 5.51 8.53 40 E7_Db NovelBoundary 0 13.26 24.27 34.62 13.55 7.39 32.42 4.50 55.45 16.20 46.71 0.00 0.00 13.31 4.59 4.45 3.59 0.00 25.49 30.78 35.09 5.99 2.39 15.19 41 I7 Intron 0 6.52 11.77 8.37 3.97 14.07 14.88 3.98 15.48 9.54 16.05 0.00 0.86 10.46 4.00 1.72 0.00 0.00 25.46 19.86 23.17 7.12 3.60 7.28 42 I7_SR1 SilentIntronRegion 0 6.54 11.80 8.39 3.98 14.11 14.92 3.99 15.53 9.57 16.10 0.00 0.86 10.50 4.01 1.72 0.00 0.00 25.54 19.92 23.24 7.14 3.61 7.30 43 E8_Aa NovelBoundary 0 3.26 19.54 14.34 8.42 22.58 12.66 1.90 25.26 16.09 17.30 0.00 0.00 6.01 2.47 0.00 0.00 0.00 16.04 11.67 36.56 6.18 2.63 4.18 44 ER8a ExonRegion 0 10.79 19.22 82.88 14.66 54.82 69.58 25.98 89.60 119.59 64.19 4.02 5.16 32.76 37.31 16.23 0.00 0.00 54.32 41.88 82.85 51.66 25.91 27.06 45 E8_Da NovelBoundary 0 6.67 15.52 17.03 15.08 45.59 32.65 13.20 33.35 25.98 18.99 0.00 7.50 20.45 7.30 14.34 0.00 0.00 22.84 7.06 58.23 0.00 3.12 0.00 46 E8a_E9a KnownJunction 0 10.30 22.82 52.16 3.60 73.17 102.67 20.62 60.79 88.69 41.07 2.68 43.96 33.11 51.45 14.09 0.00 0.00 44.27 49.79 44.17 22.92 16.72 10.93 47 E9_Aa NovelBoundary 0 11.34 37.49 40.24 15.92 15.20 21.58 6.14 21.73 15.97 14.21 0.00 6.15 6.82 9.06 13.60 0.00 0.00 15.67 4.24 20.13 13.65 0.00 0.00 48 ER9a ExonRegion 0 10.44 24.67 50.34 11.02 41.03 59.84 19.53 54.65 87.84 56.03 7.15 15.08 19.70 36.14 15.62 0.00 0.00 49.15 34.83 57.06 53.77 26.50 13.56 49 E9_Ab KnownBoundary 0 24.23 39.73 120.28 20.88 51.36 88.47 20.76 76.36 129.05 98.26 7.21 0.00 13.47 20.72 23.12 0.00 0.00 65.33 34.26 55.42 72.34 21.43 12.04 50 ER9b ExonRegion 0 9.39 29.30 48.37 13.02 25.12 42.48 19.08 62.41 92.71 63.59 3.13 0.25 11.47 27.44 18.79 0.00 0.00 69.03 26.01 69.51 53.04 20.67 25.40 51 E9_Da NovelBoundary 0 0.00 15.19 6.77 16.55 15.79 8.40 0.00 14.29 14.96 6.07 0.00 0.00 0.00 3.00 0.00 0.00 0.00 11.07 4.42 23.78 11.18 0.00 0.00 52 E9a_E10a KnownJunction 0 7.33 11.45 50.09 8.72 7.64 49.29 20.58 70.32 87.59 51.55 2.00 0.00 0.00 29.08 14.34 0.00 0.00 85.10 22.87 63.92 42.44 20.70 16.30 53 E10_Aa NovelBoundary 0 9.78 11.91 37.05 1.76 11.80 20.84 7.77 9.04 13.77 22.59 0.00 5.40 0.00 9.77 4.45 0.00 0.00 13.02 0.00 29.85 15.14 2.82 0.00 54 ER10a ExonRegion 0 8.69 11.45 59.27 8.89 15.70 42.61 17.28 90.93 101.28 63.17 2.49 4.10 12.59 37.53 18.17 0.00 0.00 93.75 39.31 85.44 65.42 22.81 18.62 55 E10_Ab KnownBoundary 0 20.60 18.94 93.17 19.48 19.86 46.05 21.95 116.08 138.14 91.49 4.16 0.00 43.99 40.38 13.35 0.00 0.00 98.82 56.10 115.31 71.23 36.62 15.79 56 ER10b ExonRegion 0 14.11 12.52 81.33 5.53 26.98 62.87 18.68 120.29 135.33 90.17 2.95 2.16 18.26 35.17 15.92 0.00 0.00 92.94 68.98 81.18 77.73 21.21 29.26 57 E10a_E11a KnownJunction 0 0.00 0.00 4.70 0.00 3.74 2.44 0.00 3.53 4.72 3.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58 E10a_E11b KnownJunction 0 13.26 26.05 71.67 5.56 91.43 87.00 18.72 100.59 112.24 74.52 12.21 0.00 0.00 23.49 10.75 0.00 0.00 82.24 35.39 73.44 65.92 16.90 40.12 59 E11_Aa NovelBoundary 0 22.23 6.45 29.83 8.89 23.09 17.94 10.16 38.12 25.72 25.68 0.00 0.00 13.64 0.00 6.06 0.00 0.00 7.75 13.08 27.80 15.01 2.88 0.00 60 ER11a ExonRegion 0 5.20 13.03 30.71 7.44 17.27 14.09 6.75 39.03 23.81 18.50 0.80 2.06 6.76 3.85 1.04 0.00 0.00 23.60 13.55 23.89 10.08 3.42 4.33 61 E11_Ab KnownBoundary 0 0.00 6.71 23.89 3.53 20.20 12.32 8.92 19.55 15.94 17.70 2.26 0.00 12.82 0.00 0.00 0.00 0.00 19.32 12.71 28.57 0.00 3.12 0.00 62 ER11b ExonRegion 0 13.30 20.56 67.21 7.94 48.34 70.20 19.31 80.26 90.35 76.69 7.52 0.00 6.83 33.22 15.70 0.00 0.00 80.14 29.98 91.26 56.15 9.29 32.88 63 E11_Da KnownBoundary 0 7.26 12.43 15.55 3.36 10.78 28.22 10.42 50.32 21.21 26.03 0.00 0.00 0.00 10.18 10.26 0.00 0.00 28.60 3.48 38.54 21.62 5.76 20.32 64 E11a_E11c KnownJunction 0 0.00 0.00 33.56 5.93 0.00 0.00 0.00 35.69 29.66 42.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.11 0.00 0.00 0.00 0.00 0.00 65 E11_Ac KnownBoundary 0 0.00 20.39 20.61 2.06 19.78 16.87 4.28 27.52 33.25 16.12 0.00 0.00 6.82 14.24 0.00 0.00 0.00 9.24 13.46 37.20 19.09 0.00 11.78 66 ER11c ExonRegion 0 7.62 21.15 74.50 9.54 28.90 49.88 16.15 71.56 95.60 80.28 0.00 0.00 14.07 42.23 17.41 0.00 0.00 68.00 22.93 77.02 46.28 7.08 28.19 67 ER11d ExonRegion 0 7.79 30.26 86.16 11.24 35.31 55.95 21.80 88.91 104.83 86.94 4.86 0.00 20.93 37.59 12.45 0.00 0.00 73.46 44.75 62.48 54.66 17.74 33.09 68 E11_Db KnownBoundary 0 3.41 17.83 54.52 5.63 27.76 40.83 13.20 57.63 66.64 47.68 7.53 0.00 13.47 2.35 4.45 0.00 0.00 64.42 23.06 26.01 31.38 17.08 15.88 69 E11b_E11d KnownJunction 0 0.00 0.00 36.99 7.79 0.00 0.00 0.00 52.12 56.65 46.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27.86 0.00 0.00 0.00 0.00 0.00 70 E11_Ad KnownBoundary 0 7.48 3.16 50.94 8.29 12.56 10.79 13.03 72.74 55.79 45.45 0.00 0.00 0.00 14.24 0.00 0.00 0.00 72.67 25.13 22.05 27.37 3.12 18.87 71 ER11e ExonRegion 0 10.58 28.47 117.23 13.63 34.34 58.07 24.71 118.98 127.83 95.38 5.80 0.00 25.80 34.38 14.51 0.00 0.00 117.33 68.49 63.83 71.25 23.27 43.07 72 ER11f ExonRegion 0 18.63 24.18 87.10 7.41 28.65 65.57 12.97 86.97 91.85 87.61 5.38 0.00 12.62 31.97 12.92 0.00 0.00 82.29 48.10 72.07 66.97 18.28 28.97 73 E11_Dc KnownBoundary 0 0.00 9.21 86.72 9.56 16.55 80.01 7.60 68.39 94.33 107.23 2.63 0.00 6.82 24.55 19.66 0.00 0.00 77.27 15.91 79.45 76.48 10.78 34.83 74 E11c_E11e KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 75 ER11g ExonRegion 0 15.58 23.99 87.77 11.62 32.04 51.21 15.25 104.02 97.78 86.39 4.90 0.00 18.42 33.26 14.22 0.00 0.00 56.86 39.04 67.13 71.15 25.96 33.30 76 E11_Dd KnownBoundary 0 37.93 37.43 107.18 16.45 79.63 78.42 21.11 109.63 124.42 85.80 0.00 0.00 20.45 24.07 13.35 0.00 0.00 70.01 29.65 80.02 57.45 23.09 27.91 77 ER11h ExonRegion 0 30.11 43.44 88.43 17.92 82.75 99.40 37.80 132.18 128.65 82.31 5.92 14.36 50.74 36.47 26.89 3.27 4.23 73.81 51.75 82.99 53.96 31.45 36.44 78 E11_De KnownBoundary 0 33.12 26.11 62.68 14.62 41.51 75.75 15.50 32.49 48.99 29.06 2.68 12.75 6.82 12.48 9.02 0.00 0.00 22.84 24.38 42.12 15.20 14.21 17.93 79 ER11i ExonRegion 0 81.66 88.08 140.64 23.80 114.99 130.95 50.33 140.09 130.79 84.72 2.60 4.53 20.02 30.76 10.97 0.00 0.31 54.18 60.94 73.98 42.72 44.80 26.05 80 E11_Ae KnownBoundary 0 89.28 76.83 198.49 21.81 134.38 120.21 35.02 154.27 106.02 58.37 1.95 12.60 13.64 24.55 20.64 0.00 0.00 63.47 83.39 79.19 25.70 15.74 15.11 81 ER11j ExonRegion 0 146.26 107.77 189.56 28.74 112.88 148.07 48.89 142.71 105.89 84.15 0.75 7.73 3.75 20.92 14.59 0.00 0.30 62.85 95.05 47.87 14.89 47.04 27.96 82 E11_Df KnownBoundary 0 137.43 91.17 124.27 22.71 135.65 140.32 78.39 91.72 62.30 63.56 0.00 0.00 6.49 5.18 9.27 0.00 4.11 8.08 14.97 26.91 19.27 20.21 11.52 83 ER11k ExonRegion 0 128.93 120.55 346.29 47.43 191.36 156.98 51.14 243.50 199.83 143.35 3.43 5.81 26.23 31.27 23.66 0.00 0.31 79.28 90.91 102.10 63.70 40.77 31.92